Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Reverse (-)

29631862 .. 29632776

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCTGCTTCTGCTTCTCACCAACTTCACGATCTTCTTGGGGACTTCTACTCCAGGAGACTACTCCTCCACAACCCACTTAACCCTCCACCCATCTCTCCATCTTCAACCTCGCACGACACATCTTCGTCTTCTCCCGATCAGTACCCCGGAGACAACAGCTTCGATGCTAATGTGGTCATGGTGCTCTCTGTCCTCCTCTGCGCCCTAATTTGCTCTTTGGGGCTCAACTCCATCATAAAGTGCGCTCTGAGGTGCTCGAGCTTCGTGTCCTCGGAGTCTAGAGACAACTCGGCGAGGCTGGCCAACACCGGAGTCAAGAAGAAAGCCCTCAAGACTTTTACGACGGTTAATTACTCAGCTGAGCTTAAGCTTCCCGGGTTGGACAGTGAGTGCATAATTTGTTTGTCGGAGTTTACAACCGGCGAGCGCGTGCGGCTACTTCCCAAGTGTAACCATGGATTCCATGTGAGGTGCATCGATAAGTGGCTGAGCTCTCACTCTTCGTGCCCTAAATGCCGGCACAGCTTGATCGAGACGTGTCAGAAGATTGTTGGCTTCAGCCAGGCAGCTAGCTCGTCGGAGACAACTCGTGCTCTTCCTGTGCAGGAAACTACAAGTACTTTGGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

212

Amino Acids

22.94

Weight (kDa)

8.01

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	129 - 174	3.2e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	131 - 174	2.1e-14	Ring finger domain
zf-RING_11	PF17123	131 - 160	1.7e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	131 - 173	1.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	132 - 173	2.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	432
AciI	CCGC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	146, 622
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	1 cut(s)	108
AjiI	CACGTC	1 cut(s)	540
AjnI	CCWGG	2 cut(s)	53, 564
AluBI	AGCT	9 cut(s)	162, 264, 362, 367, 373, 495, 528, 572, 576
AluI	AGCT	9 cut(s)	162, 264, 362, 367, 373, 495, 528, 572, 576
Alw21I	GWGCWC	4 cut(s)	189, 260, 497, 598
Alw26I	GTCTC	5 cut(s)	52, 147, 279, 530, 578
Ama87I	CYCGRG	2 cut(s)	259, 377
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	569
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	3 cut(s)	206, 248, 432
AsuC2I	CCSGG	3 cut(s)	150, 378, 379
AsuHPI	GGTGA	1 cut(s)	11
AsuNHI	GCTAGC	1 cut(s)	572
AvaI	CYCGRG	2 cut(s)	259, 377
BaeGI	GKGCMC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	228, 497
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	4 cut(s)	189, 260, 497, 598
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	3 cut(s)	101, 109, 242
BcgI	CGANNNNNNTGC	2 cut(s)	558, 592
BciT130I	CCWGG	2 cut(s)	55, 566
BcnI	CCSGG	3 cut(s)	150, 378, 379
BcoDI	GTCTC	5 cut(s)	52, 147, 279, 530, 578
BfaI	CTAG	2 cut(s)	282, 573
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	437, 570
BlpI	GCTNAGC	2 cut(s)	363, 491
BlsI	GCNGC	2 cut(s)	438, 571
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	5 cut(s)	55, 150, 378, 379, 566
BmeT110I	CYCGRG	2 cut(s)	259, 377
BmgBI	CACGTC	1 cut(s)	540
BmrFI	CCNGG	5 cut(s)	55, 150, 378, 379, 566
BmsI	GCATC	2 cut(s)	157, 486
BmtI	GCTAGC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	37
Bpu1102I	GCTNAGC	2 cut(s)	363, 491
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	150, 378, 379
Bsa29I	ATCGAT	1 cut(s)	480
BsaJI	CCNNGG	4 cut(s)	148, 273, 377, 457
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 51, 65, 81
Bse118I	RCCGGY	2 cut(s)	422, 519
BseBI	CCWGG	2 cut(s)	55, 566
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	148, 273, 377, 457
BseMII	CTCAG	4 cut(s)	242, 354, 372, 482
BseRI	GAGGAG	2 cut(s)	56, 188
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	4 cut(s)	189, 260, 497, 598
BsiHKCI	CYCGRG	2 cut(s)	259, 377
BsiSI	CCGG	5 cut(s)	150, 312, 378, 423, 520
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	5 cut(s)	52, 147, 279, 530, 578
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	259, 377
Bsp1286I	GDGCHC	6 cut(s)	189, 228, 260, 497, 512, 598
Bsp143I	GATC	3 cut(s)	31, 139, 531
Bsp1720I	GCTNAGC	2 cut(s)	363, 491
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	4 cut(s)	243, 355, 371, 483
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	432
BspOI	GCTAGC	1 cut(s)	576
BspQI	GCTCTTC	1 cut(s)	603
BspTI	CTTAAG	1 cut(s)	368
BsrFI	RCCGGY	2 cut(s)	422, 519
BssAI	RCCGGY	2 cut(s)	422, 519
BssECI	CCNNGG	4 cut(s)	148, 273, 377, 457
BssMI	GATC	3 cut(s)	31, 139, 531
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	55, 566
Bst4CI	ACNGT	2 cut(s)	349, 389
Bst6I	CTCTTC	2 cut(s)	508, 603
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	6 cut(s)	6, 303, 428, 434, 521, 574
BstDEI	CTNAG	4 cut(s)	251, 358, 363, 491
BstDSI	CCRYGG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	432
BstHHI	GCGC	3 cut(s)	206, 248, 432
BstKTI	GATC	3 cut(s)	34, 142, 534
BstMAI	GTCTC	5 cut(s)	52, 147, 279, 530, 578
BstMBI	GATC	3 cut(s)	31, 139, 531
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 436, 516, 525
BstNI	CCWGG	2 cut(s)	55, 566
BstSCI	CCNGG	5 cut(s)	53, 148, 376, 377, 564
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	305
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	457
BtrI	CACGTC	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	6 cut(s)	6, 303, 428, 434, 521, 574
CfoI	GCGC	3 cut(s)	206, 248, 432
Cfr10I	RCCGGY	2 cut(s)	422, 519
Cfr9I	CCCGGG	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	145, 621
CviAII	CATG	3 cut(s)	181, 458, 467
CviQI	GTAC	2 cut(s)	145, 621
DdeI	CTNAG	4 cut(s)	251, 358, 363, 491
DpnI	GATC	3 cut(s)	33, 141, 533
DpnII	GATC	3 cut(s)	31, 139, 531
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	508, 603
EarI	CTCTTC	2 cut(s)	508, 603
Ecl136II	GAGCTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	2 cut(s)	228, 497
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	544
Eco88I	CYCGRG	2 cut(s)	259, 377
EcoICRI	GAGCTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	53, 564
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	2 cut(s)	228, 497
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	3 cut(s)	184, 461, 470
FaiI	YATR	5 cut(s)	182, 239, 398, 459, 468
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	180, 457, 466
Fnu4HI	GCNGC	2 cut(s)	437, 570
FriOI	GRGCYC	2 cut(s)	228, 497
Fsp4HI	GCNGC	2 cut(s)	437, 570
FspBI	CTAG	2 cut(s)	282, 573
GlaI	GCGC	3 cut(s)	205, 247, 431
GluI	GCNGC	2 cut(s)	437, 570
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	5 cut(s)	150, 312, 378, 423, 520
HhaI	GCGC	3 cut(s)	206, 248, 432
Hin1II	CATG	3 cut(s)	184, 461, 470
Hin6I	GCGC	3 cut(s)	204, 246, 430
HinP1I	GCGC	3 cut(s)	204, 246, 430
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	278, 315, 462
HpaII	CCGG	5 cut(s)	150, 312, 378, 423, 520
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	5 cut(s)	252, 277, 412, 546, 583
Hpy188III	TCNNGA	6 cut(s)	29, 137, 282, 319, 334, 535
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	2 cut(s)	349, 583
HpyCH4III	ACNGT	2 cut(s)	349, 389
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	3 cut(s)	396, 477, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 436, 516, 525
HpyF3I	CTNAG	4 cut(s)	251, 358, 363, 491
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	3 cut(s)	184, 461, 470
HspAI	GCGC	3 cut(s)	204, 246, 430
KroI	GCCGGC	1 cut(s)	519
KroNI	GCCGGC	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	31, 139, 531
LguI	GCTCTTC	1 cut(s)	603
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	2 cut(s)	157, 486
MaeI	CTAG	2 cut(s)	282, 573
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	33, 141, 533
MboI	GATC	3 cut(s)	31, 139, 531
MboII	GAAGA	8 cut(s)	26, 96, 117, 123, 334, 495, 559, 590
MhlI	GDGCHC	6 cut(s)	189, 228, 260, 497, 512, 598
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	4 cut(s)	210, 352, 399, 629
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	2 cut(s)	287, 324
MmeI	TCCRAC	3 cut(s)	363, 390, 561
Mox20I	TGGCCA	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	3 cut(s)	81, 351, 369
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	5 cut(s)	150, 312, 378, 423, 520
MspR9I	CCNGG	5 cut(s)	55, 150, 378, 379, 566
MvaI	CCWGG	2 cut(s)	55, 566
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	4 cut(s)	302, 436, 516, 525
NaeI	GCCGGC	1 cut(s)	521
NciI	CCSGG	3 cut(s)	150, 378, 379
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	31, 139, 531
NgoMIV	GCCGGC	1 cut(s)	519
NheI	GCTAGC	1 cut(s)	572
NlaIII	CATG	3 cut(s)	184, 461, 470
NmeAIII	GCCGAG	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	438, 571
PleI	GAGTC	2 cut(s)	286, 323
PpsI	GAGTC	2 cut(s)	286, 323
Psp124BI	GAGCTC	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	53, 564
PspGI	CCWGG	2 cut(s)	53, 564
PspXI	VCTCGAGB	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	146, 622
RsaNI	GTAC	2 cut(s)	145, 621
SacI	GAGCTC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	81, 351, 369
SatI	GCNGC	2 cut(s)	437, 570
Sau3AI	GATC	3 cut(s)	31, 139, 531
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	2 cut(s)	287, 324
ScrFI	CCNGG	5 cut(s)	55, 150, 378, 379, 566
SduI	GDGCHC	6 cut(s)	189, 228, 260, 497, 512, 598
SfaNI	GCATC	2 cut(s)	157, 486
Sfr274I	CTCGAG	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	379
SmlI	CTYRAG	3 cut(s)	259, 332, 368
SmoI	CTYRAG	3 cut(s)	259, 332, 368
Sse9I	AATT	4 cut(s)	210, 352, 399, 629
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	2 cut(s)	282, 573
SstI	GAGCTC	1 cut(s)	497
StyD4I	CCNGG	5 cut(s)	53, 148, 376, 377, 564
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	349, 389
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	4 cut(s)	165, 260, 480, 534
TasI	AATT	4 cut(s)	210, 352, 399, 629
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	3 cut(s)	81, 351, 369
Tru9I	TTAA	3 cut(s)	81, 351, 369
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	1 cut(s)	569
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	259
XmaI	CCCGGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	282, 573
ZrmI	AGTACT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.