AT1G49220

zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015157
Physical Location & Seq
Forward (+)
18205934 .. 18206701
768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49220.1

Sequence Viewer

Length: 756 bp
ATGTCTGCAAATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAACAATTCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGTTATGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACATTACATCATTCGTTGTGCACTCAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTACCAAGTCTTTCGTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGGCTTGACGAAGAGTGTGTCATTTGTTTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAACCACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAATGCAGAAACTGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTACGGCAGAACCAACAGAGATCGTAATTGTCACGATTGTTCCTCTAGAACCAACAGAGATCGTAATTGTCACGATTGCTCCTCTAGAACCAACAGAGATCGTTATTGTCATGATTGCTCCGCTAGAACCTGAAGGAAGAGTAAACACTATTAGAGAAATCAGCTAG

Protein Analysis

251

Amino Acids

27.81

Weight (kDa)

6.38

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 133 - 177 2.6e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 134 - 177 4.2e-14 Ring finger domain
zf-RING_11 PF17123 134 - 163 2.1e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 134 - 176 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 135 - 176 9.8e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca FvH4_1g23480
prunus_persica Prupe.6G163700_v2.0.a1
pyrus_communis pycom01g02700
rosa_chinensis RchiOBHm_Chr2g0118861
rosa_laevigata RLG00000018427
rosa_roxburghii Rroxscaffold_2G00124640
rosa_rugosa Rorug02G0219400
rosa_samantha Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana Rw2G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 390
AciI CCGC 3 cut(s) 57, 122, 710
AcuI CTGAAG 3 cut(s) 9, 556, 741
AfaI GTAC 1 cut(s) 285
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 1 cut(s) 503
AjiI CACGTC 1 cut(s) 549
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 6 cut(s) 29, 76, 338, 442, 581, 753
AluI AGCT 6 cut(s) 29, 76, 338, 442, 581, 753
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 70, 539
Alw44I GTGCAC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 534
Ama87I CYCGRG 1 cut(s) 218
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 76, 213, 448
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
AsuHPI GGTGA 3 cut(s) 360, 446, 578
AvaI CYCGRG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 3 cut(s) 63, 200, 435
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 2 cut(s) 70, 539
BfaI CTAG 5 cut(s) 69, 635, 674, 713, 754
BfuAI ACCTGC 1 cut(s) 390
BisI GCNGC 3 cut(s) 77, 214, 449
BlsI GCNGC 3 cut(s) 78, 215, 450
Bme1390I CCNGG 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 549
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 347
BoxI GACNNNNGTC 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 52, 217, 386, 466
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 4 cut(s) 52, 217, 386, 466
BseMII CTCAG 4 cut(s) 175, 262, 363, 457
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 126, 660
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 3 cut(s) 63, 200, 435
BsgI GTGCAG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 70, 539
BsmBI CGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 270, 609, 648, 687
BspACI CCGC 3 cut(s) 57, 122, 710
BspCNI CTCAG 4 cut(s) 174, 261, 364, 456
BspHI TCATGA 2 cut(s) 267, 699
BspLI GGNNCC 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 390
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 52, 217, 386, 466
BssMI GATC 4 cut(s) 270, 609, 648, 687
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 393, 721
BstAPI GCANNNNNTGC 1 cut(s) 210
BstDEI CTNAG 5 cut(s) 161, 248, 341, 372, 443
BstDSI CCRYGG 1 cut(s) 466
BstKTI GATC 4 cut(s) 273, 612, 651, 690
BstMAI GTCTC 2 cut(s) 70, 539
BstMBI GATC 4 cut(s) 270, 609, 648, 687
BstMWI GCNNNNNNNGC 3 cut(s) 82, 210, 448
BstNI CCWGG 1 cut(s) 387
BstPAI GACNNNNGTC 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 63, 200, 435
BtgI CCRYGG 1 cut(s) 466
BtrI CACGTC 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 534
CciI TCATGA 2 cut(s) 267, 699
Csp6I GTAC 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 4 cut(s) 149, 268, 476, 700
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 5 cut(s) 161, 248, 341, 372, 443
DpnI GATC 4 cut(s) 272, 611, 650, 689
DpnII GATC 4 cut(s) 270, 609, 648, 687
Eam1104I CTCTTC 2 cut(s) 393, 721
EarI CTCTTC 2 cut(s) 393, 721
Eco130I CCWWGG 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 9, 556, 741
Eco88I CYCGRG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 539
FaeI CATG 4 cut(s) 152, 271, 479, 703
FaiI YATR 7 cut(s) 143, 150, 176, 269, 477, 488, 701
FatI CATG 4 cut(s) 148, 267, 475, 699
Fnu4HI GCNGC 3 cut(s) 77, 214, 449
Fsp4HI GCNGC 3 cut(s) 77, 214, 449
FspBI CTAG 5 cut(s) 69, 635, 674, 713, 754
GluI GCNGC 3 cut(s) 77, 214, 449
HapII CCGG 1 cut(s) 432
Hin1II CATG 4 cut(s) 152, 271, 479, 703
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 324, 584
HpaII CCGG 1 cut(s) 432
HphI GGTGA 3 cut(s) 360, 446, 578
Hpy166II GTNNAC 4 cut(s) 245, 300, 437, 733
Hpy188I TCNGA 4 cut(s) 251, 277, 421, 513
Hpy188III TCNNGA 8 cut(s) 69, 268, 328, 622, 635, 661, 674, 700
Hpy8I GTNNAC 4 cut(s) 245, 300, 437, 733
HpyAV CCTTC 3 cut(s) 30, 46, 716
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 3 cut(s) 253, 262, 548
HpyCH4V TGCA 6 cut(s) 8, 85, 128, 245, 486, 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 210, 448
HpyF3I CTNAG 5 cut(s) 161, 248, 341, 372, 443
HpySE526I ACGT 3 cut(s) 253, 262, 548
Hsp92II CATG 4 cut(s) 152, 271, 479, 703
Kzo9I GATC 4 cut(s) 270, 609, 648, 687
LmnI GCTCC 3 cut(s) 456, 673, 712
Lsp1109I GCAGC 3 cut(s) 63, 200, 435
LweI GCATC 1 cut(s) 168
MaeI CTAG 5 cut(s) 69, 635, 674, 713, 754
MaeII ACGT 3 cut(s) 253, 262, 548
MaeIII GTNAC 8 cut(s) 15, 222, 362, 461, 566, 589, 619, 658
MalI GATC 4 cut(s) 272, 611, 650, 689
MboI GATC 4 cut(s) 270, 609, 648, 687
MboII GAAGA 4 cut(s) 15, 343, 410, 738
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 3 cut(s) 47, 615, 654
MnlI CCTC 6 cut(s) 147, 170, 203, 227, 642, 681
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 82, 210, 448
NdeII GATC 4 cut(s) 270, 609, 648, 687
NlaIII CATG 4 cut(s) 152, 271, 479, 703
NlaIV GGNNCC 1 cut(s) 473
NmuCI GTSAC 3 cut(s) 566, 619, 658
PagI TCATGA 2 cut(s) 267, 699
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PfeI GAWTC 2 cut(s) 324, 584
PkrI GCNGC 3 cut(s) 78, 215, 450
PshAI GACNNNNGTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 534
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SatI GCNGC 3 cut(s) 77, 214, 449
Sau3AI GATC 4 cut(s) 270, 609, 648, 687
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 3 cut(s) 47, 615, 654
SsiI CCGC 3 cut(s) 57, 122, 710
SspMI CTAG 5 cut(s) 69, 635, 674, 713, 754
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 3 cut(s) 256, 265, 551
TasI AATT 3 cut(s) 47, 615, 654
TfiI GAWTC 2 cut(s) 324, 584
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 3 cut(s) 566, 619, 658
TseI GCWGC 3 cut(s) 76, 213, 448
Tsp45I GTSAC 3 cut(s) 566, 619, 658
TspDTI ATGAA 3 cut(s) 256, 300, 392
TspRI CASTG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 243
XbaI TCTAGA 3 cut(s) 68, 634, 673
XspI CTAG 5 cut(s) 69, 635, 674, 713, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.