Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Forward (+)

6465748 .. 6467175

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18773.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTTTCAGAGCACTTACCTTCTTCTTCATCTCAAGTTTTCCAAGAACACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCATTTGCCCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATGTTCTCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAATACGTTGTGCATTTATACGTTCTCGAAGTTTCATGATCTCTGATCCCATCTCTATCCCATCCACACCAAGAGATTCATCAGTAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTACCAGTTGTGAATTACTCACCTGAAATTAACCTGCCAGGGGTCGGTGAAGAGTGTGTCATCTGCTTGTCTGATTTTGTTGCTGGAGAACAGCTACGTGTACTTCCCAAGTGCAACCATGGATTCCACCTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGACACTGTCTGGTTGATACATGCCAAAAAGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGGCAGCGACAGCAACGGAGAGCATAGATATCAGAATTTCTCCTCTAGAACCTGAAGCAAGAGTAGCCACTTTTAGAGAAAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

220

Amino Acids

24.46

Weight (kDa)

7.55

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	129 - 172	3.5e-14	Ring finger domain
zf-RING_11	PF17123	129 - 158	1.7e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	129 - 171	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	143 - 172	2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	375
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	2 cut(s)	147, 183
AclWI	GGATC	3 cut(s)	85, 254, 317
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	68, 648
AfaI	GTAC	2 cut(s)	126, 435
AfiI	CCNNNNNNNGG	2 cut(s)	373, 377
AflII	CTTAAG	1 cut(s)	547
AflIII	ACRYGT	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	119, 323, 427, 566, 660
AluI	AGCT	5 cut(s)	119, 323, 427, 566, 660
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	3 cut(s)	85, 254, 317
AlwNI	CAGNNNCTG	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	200
ApeKI	GCWGC	5 cut(s)	163, 468, 563, 578, 657
ApoI	RAATTY	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	345, 392
AvaI	CYCGRG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	150, 455, 575, 590
BccI	CCATC	2 cut(s)	272, 283
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	620, 661
BfrI	CTTAAG	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	6 cut(s)	148, 164, 469, 564, 579, 658
BlsI	GCNGC	6 cut(s)	149, 165, 470, 565, 580, 659
Bme1390I	CCNGG	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	480, 550
BpmI	CTGGAG	2 cut(s)	55, 438
BpuEI	CTTGAG	3 cut(s)	18, 163, 311
BsaAI	YACGTR	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	199, 371, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 377
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	199, 371, 451
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	373, 377
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	150, 455, 575, 590
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	373, 377
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	90, 252, 259, 309, 568
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	2 cut(s)	147, 183
BspHI	TCATGA	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	85, 254, 317
BspTI	CTTAAG	1 cut(s)	547
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	199, 371, 451
BssMI	GATC	5 cut(s)	90, 252, 259, 309, 568
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	62, 521
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	547
BstBAI	YACGTR	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	5 cut(s)	93, 255, 262, 312, 571
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	5 cut(s)	90, 252, 259, 309, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 116, 584, 638
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	4 cut(s)	150, 455, 575, 590
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	451
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	517
BveI	ACCTGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	519
CciI	TCATGA	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	125, 434
CviAII	CATG	5 cut(s)	122, 160, 250, 452, 534
CviJI	RGCY	7 cut(s)	119, 323, 427, 484, 566, 641, 660
CviKI_1	RGCY	7 cut(s)	119, 323, 427, 484, 566, 641, 660
CviQI	GTAC	2 cut(s)	125, 434
DpnI	GATC	5 cut(s)	92, 254, 261, 311, 570
DpnII	GATC	5 cut(s)	90, 252, 259, 309, 568
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	68, 648
Eco88I	CYCGRG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	5 cut(s)	125, 163, 253, 455, 537
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	5 cut(s)	121, 159, 249, 451, 533
FauNDI	CATATG	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	148, 164, 469, 564, 579, 658
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	6 cut(s)	148, 164, 469, 564, 579, 658
FspBI	CTAG	2 cut(s)	620, 661
GluI	GCNGC	6 cut(s)	148, 164, 469, 564, 579, 658
GsuI	CTGGAG	2 cut(s)	55, 438
Hin1II	CATG	5 cut(s)	125, 163, 253, 455, 537
HinfI	GANTC	2 cut(s)	290, 456
HphI	GGTGA	2 cut(s)	345, 392
Hpy166II	GTNNAC	2 cut(s)	301, 434
Hpy188I	TCNGA	5 cut(s)	10, 259, 406, 507, 608
Hpy188III	TCNNGA	6 cut(s)	72, 240, 250, 313, 328, 620
Hpy8I	GTNNAC	2 cut(s)	301, 434
HpyAV	CCTTC	2 cut(s)	30, 473
HpyCH4III	ACNGT	2 cut(s)	62, 521
HpyCH4IV	ACGT	3 cut(s)	220, 235, 430
HpyCH4V	TGCA	6 cut(s)	208, 227, 447, 471, 513, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 116, 584, 638
HpySE526I	ACGT	3 cut(s)	220, 235, 430
Hsp92II	CATG	5 cut(s)	125, 163, 253, 455, 537
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	90, 252, 259, 309, 568
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	4 cut(s)	150, 455, 575, 590
LweI	GCATC	2 cut(s)	480, 550
MaeI	CTAG	2 cut(s)	620, 661
MaeII	ACGT	3 cut(s)	220, 235, 430
MaeIII	GTNAC	2 cut(s)	333, 551
MalI	GATC	5 cut(s)	92, 254, 261, 311, 570
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	5 cut(s)	90, 252, 259, 309, 568
MboII	GAAGA	4 cut(s)	15, 18, 328, 395
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	77, 346, 360, 609
MnlI	CCTC	2 cut(s)	209, 627
MseI	TTAA	2 cut(s)	363, 548
MspA1I	CMGCKG	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	547
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	107, 116, 584, 638
NcoI	CCATGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	5 cut(s)	90, 252, 259, 309, 568
NlaIII	CATG	5 cut(s)	125, 163, 253, 455, 537
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	537
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	290, 456
PflFI	GACNNNGTC	1 cut(s)	519
PkrI	GCNGC	6 cut(s)	149, 165, 470, 565, 580, 659
Ppu21I	YACGTR	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	90
PsyI	GACNNNGTC	1 cut(s)	519
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	126, 435
RsaNI	GTAC	2 cut(s)	125, 434
SaqAI	TTAA	2 cut(s)	363, 548
SatI	GCNGC	6 cut(s)	148, 164, 469, 564, 579, 658
Sau3AI	GATC	5 cut(s)	90, 252, 259, 309, 568
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	480, 550
SmlI	CTYRAG	4 cut(s)	33, 142, 326, 547
SmoI	CTYRAG	4 cut(s)	33, 142, 326, 547
Sse9I	AATT	4 cut(s)	77, 346, 360, 609
SsiI	CCGC	2 cut(s)	147, 183
SspMI	CTAG	2 cut(s)	620, 661
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	62, 521
TaiI	ACGT	3 cut(s)	223, 238, 433
TaqI	TCGA	3 cut(s)	57, 241, 474
TasI	AATT	4 cut(s)	77, 346, 360, 609
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	290, 456
Tru1I	TTAA	2 cut(s)	363, 548
Tru9I	TTAA	2 cut(s)	363, 548
TscAI	CASTG	1 cut(s)	524
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	5 cut(s)	163, 468, 563, 578, 657
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	4 cut(s)	18, 43, 238, 282
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	524
Tth111I	GACNNNGTC	1 cut(s)	519
Vha464I	CTTAAG	1 cut(s)	547
XapI	RAATTY	1 cut(s)	609
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	1 cut(s)	537
XspI	CTAG	2 cut(s)	620, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.