Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015157

Physical Location & Seq

Genomic Coordinates Forward (+)

18201889 .. 18202764

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTGCAAACGAGTTACCTGCTTCAGCTCAATCCTTGCAAGAACAATTCCTTGGCAGTTTTGTCACTAGAAAGCTTCTTCTGCACGACCCATTTGACCACAACTCTCTTCGAGTATTTGCGGTTGCACCATCTCCTCTCATAACACATGAGAACAACCTCAAAGGGAATGTTCTGATGCTTCTCTCAGTTCTCATCTGTGGCATCATCTGTTGCCTTGGGTTACATTACATCATTCGCTGTGCATTCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATATCCAGTCTTTCAACACCACGAAGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTGAGGATGTTCCCAGTCGTGAGTTACTCACGTGAGATGAACTTGCCCGGGATTGGTGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAATCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACATCATTTGACATGTCCGAAATGCAGACACTGTCTGGTTGAGACATGTCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGGCATCAACACCAACAGAGAGCGTAATTGTCAGGATTGATCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

25.18

Weight (kDa)

8.62

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	134 - 177	4.6e-14	Ring finger domain
zf-RING_11	PF17123	134 - 163	1.8e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	134 - 176	1.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	150 - 177	3.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49200 AT1G49210 AT1G49220 AT1G49230 AT3G18773
fragaria_vesca	FvH4_1g23480
prunus_persica	Prupe.6G163700_v2.0.a1
pyrus_communis	pycom01g02700
rosa_chinensis	RchiOBHm_Chr2g0118861
rosa_laevigata	RLG00000018427
rosa_roxburghii	Rroxscaffold_2G00124640
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2AG276400 Rh2DG283300 Rh2DG302600
rosa_wichuraiana	Rw2G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	623
AcuI	CTGAAG	3 cut(s)	9, 556, 663
AcvI	CACGTG	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	2 cut(s)	515, 548
AgsI	TTSAA	3 cut(s)	297, 503, 588
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	6 cut(s)	29, 76, 338, 442, 581, 675
AluI	AGCT	6 cut(s)	29, 76, 338, 442, 581, 675
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	448, 672
AsuC2I	CCSGG	2 cut(s)	387, 388
AsuHPI	GGTGA	3 cut(s)	407, 446, 578
AvaI	CYCGRG	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	139
BcgI	CGANNNNNNTGC	1 cut(s)	36
BcnI	CCSGG	2 cut(s)	387, 388
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	3 cut(s)	69, 635, 676
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	449, 673
BlsI	GCNGC	2 cut(s)	450, 674
Bme1390I	CCNGG	2 cut(s)	387, 388
BmeT110I	CYCGRG	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	2 cut(s)	387, 388
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	3 cut(s)	168, 213, 602
BmuI	ACTGGG	1 cut(s)	347
BoxI	GACNNNNGTC	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	443
BpuMI	CCSGG	2 cut(s)	387, 388
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	52, 217, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	288, 353
BseDI	CCNNGG	3 cut(s)	52, 217, 386
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	4 cut(s)	201, 267, 332, 457
BseNI	ACTGG	2 cut(s)	288, 353
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	270, 628
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	4 cut(s)	200, 268, 333, 456
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	473
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	288, 353
BssECI	CCNNGG	3 cut(s)	52, 217, 386
BssMI	GATC	2 cut(s)	270, 628
BssT1I	CCWWGG	2 cut(s)	52, 217
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	3 cut(s)	114, 393, 643
BstBAI	YACGTR	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	187, 276, 341, 443
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	273, 631
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	270, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 448
BstNSI	RCATGY	2 cut(s)	519, 552
BstPAI	GACNNNNGTC	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	385, 386
BstV1I	GCAGC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	532
BveI	ACCTGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	267
Cfr9I	CCCGGG	1 cut(s)	386
CviAII	CATG	6 cut(s)	149, 268, 467, 476, 516, 549
CviJI	RGCY	9 cut(s)	29, 76, 280, 338, 442, 448, 499, 581, 675
CviKI_1	RGCY	9 cut(s)	29, 76, 280, 338, 442, 448, 499, 581, 675
DdeI	CTNAG	4 cut(s)	187, 276, 341, 443
DpnI	GATC	2 cut(s)	272, 630
DpnII	GATC	2 cut(s)	270, 628
Eam1104I	CTCTTC	3 cut(s)	114, 393, 643
EarI	CTCTTC	3 cut(s)	114, 393, 643
Eco130I	CCWWGG	2 cut(s)	52, 217
Eco57I	CTGAAG	3 cut(s)	9, 556, 663
Eco72I	CACGTG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	52, 217
ErhI	CCWWGG	2 cut(s)	52, 217
FaeI	CATG	6 cut(s)	152, 271, 470, 479, 519, 552
FaiI	YATR	9 cut(s)	143, 150, 269, 284, 468, 477, 488, 517, 550
FatI	CATG	6 cut(s)	148, 267, 466, 475, 515, 548
Fnu4HI	GCNGC	2 cut(s)	449, 673
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	449, 673
FspBI	CTAG	3 cut(s)	69, 635, 676
GluI	GCNGC	2 cut(s)	449, 673
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	6 cut(s)	152, 271, 470, 479, 519, 552
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	324, 584
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	3 cut(s)	407, 446, 578
Hpy166II	GTNNAC	2 cut(s)	437, 655
Hpy188I	TCNGA	6 cut(s)	177, 251, 277, 342, 421, 522
Hpy188III	TCNNGA	5 cut(s)	268, 328, 358, 622, 635
Hpy8I	GTNNAC	2 cut(s)	437, 655
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	3 cut(s)	253, 262, 370
HpyCH4V	TGCA	8 cut(s)	8, 40, 85, 128, 245, 462, 486, 528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 448
HpyF3I	CTNAG	4 cut(s)	187, 276, 341, 443
HpySE526I	ACGT	3 cut(s)	253, 262, 370
Hsp92II	CATG	6 cut(s)	152, 271, 470, 479, 519, 552
Kzo9I	GATC	2 cut(s)	270, 628
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	9 cut(s)	33, 301, 366, 400, 417, 430, 524, 607, 654
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	3 cut(s)	168, 213, 602
MaeI	CTAG	3 cut(s)	69, 635, 676
MaeII	ACGT	3 cut(s)	253, 262, 370
MaeIII	GTNAC	5 cut(s)	15, 64, 222, 362, 566
MalI	GATC	2 cut(s)	272, 630
MboI	GATC	2 cut(s)	270, 628
MboII	GAAGA	6 cut(s)	71, 101, 249, 343, 410, 660
MluCI	AATT	2 cut(s)	47, 615
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	147, 170, 336, 642
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	387, 388
Mva1269I	GAATGC	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	82, 448
NciI	CCSGG	2 cut(s)	387, 388
NdeII	GATC	2 cut(s)	270, 628
NlaIII	CATG	6 cut(s)	152, 271, 470, 479, 519, 552
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	64, 566
NspI	RCATGY	2 cut(s)	519, 552
PagI	TCATGA	1 cut(s)	267
PciI	ACATGT	2 cut(s)	515, 548
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	324, 584
PflFI	GACNNNGTC	1 cut(s)	534
PkrI	GCNGC	2 cut(s)	450, 674
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
Ppu21I	YACGTR	1 cut(s)	371
PscI	ACATGT	2 cut(s)	515, 548
PshAI	GACNNNNGTC	1 cut(s)	573
PspCI	CACGTG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	534
PsyI	GACNNNGTC	1 cut(s)	534
SatI	GCNGC	2 cut(s)	449, 673
Sau3AI	GATC	2 cut(s)	270, 628
ScrFI	CCNGG	2 cut(s)	387, 388
SfaNI	GCATC	3 cut(s)	168, 213, 602
SmaI	CCCGGG	1 cut(s)	388
Sse9I	AATT	2 cut(s)	47, 615
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	3 cut(s)	69, 635, 676
StyD4I	CCNGG	2 cut(s)	385, 386
StyI	CCWWGG	2 cut(s)	52, 217
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	3 cut(s)	256, 265, 373
TaqI	TCGA	1 cut(s)	112
TasI	AATT	2 cut(s)	47, 615
TfiI	GAWTC	2 cut(s)	324, 584
TscAI	CASTG	1 cut(s)	539
TseFI	GTSAC	2 cut(s)	64, 566
TseI	GCWGC	2 cut(s)	448, 672
Tsp45I	GTSAC	2 cut(s)	64, 566
TspDTI	ATGAA	3 cut(s)	256, 300, 392
TspMI	CCCGGG	1 cut(s)	386
TspRI	CASTG	1 cut(s)	539
Tth111I	GACNNNGTC	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	2 cut(s)	519, 552
XmaI	CCCGGG	1 cut(s)	386
XspI	CTAG	3 cut(s)	69, 635, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.