AT1G49740

phosphoric diester hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011249
Physical Location & Seq
Forward (+)
18407400 .. 18410022
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49740.1

Sequence Viewer

Length: 1080 bp
ATGTTTCAAAGATTATTACTCTTCCTTCTCATTGCTCTTCTGCTCCAATCTTCTTTCCTTTTAGAGATTTCCTCTGCTCTCAAGGAAGGAAAAACATGTATAACAAACAGCAACTGTGACGCTGGATTACACTGCGAAACATGTATAGCCAACACTGATTTTAGACCTAGATGCTCCAGAACCCAACCCATCAACCCCATCACCAAGGCAAAGGGGTTGCCTTTTAACAAGTATTCATGGTTAACCACACACAACTCTTTTGCTCGTTTGGGGGAAGTATCACGGACCGGTTCTGCTATTTTGGCTCCTACTAACCAGCAAGATTCAATCACAAGCCAACTCAATAATGGTGTAAGAGGGTTTATGCTCGACATGTATGACTTCCAAAACGATATCTGGCTTTGCCATTCTTTCGATGGAACATGTTTCAATTTCACCGCTTTTCAACCGGCTATTAACATTTTAAGGGAGTTTCAAGTGTTTCTAGAGAAGAACAAAGAGGAAGTTGTAACGATTATCATCGAAGATTATGTGAAATCGCCTAAAGGTCTCACAAAAGTGTTTGATGCGGCTGGCTTACGAAAGTTCATGTTTCCAGTATCTAGAATGCCCAAAAATGGAGGGGACTGGCCAAGGCTTGATGACATGGTGCGAAAAAACCAACGGTTGCTAGTTTTTACATCCGATTCACATAAAGAAGCAACCGAAGGGATCGCCTATCAATGGAAGTATATGGTTGAGAATCAATATGGAAATGGAGGGTTGAAGGTAGGAGTGTGTCCAAATAGAGCTCAATCAGCGCCAATGAGCGATAAATCAAAATCTCTTGTTCTTGTGAACCATTTCCCTGATGCTGCGGATGTGATAGTAGCATGTAAGCAAAACTCAGCTTCTCTTCTTGAATCCATAAAGACATGTTACCAAGCCGCGGGACAGCGATGGCCTAACTTCATAGCAGTCGATTTCTACAAGAGAAGCGATGGTGGAGGAGCTCCGCAAGCGGTTGATGTTGCGAATGGCAATTTGATATGCGGTTGCGATAACTTTGCAGCGTGCAAGGCTGACGGCAAATGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

39.83

Weight (kDa)

8.47

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 62 - 353 6.4e-160 PI-PLC-like catalytic domain
PI-PLC_X PF26146 102 - 327 1.1e-24 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49740 AT3G19310
fragaria_vesca FvH4_2g05830 FvH4_2g05830 FvH4_2g05830 FvH4_2g05830
malus_domestica MD05G1082900.v1.1
prunus_persica Prupe.8G127500_v2.0.a1
pyrus_communis pycom05g07800
rosa_chinensis RchiOBHm_Chr6g0257791
rosa_laevigata RLG00000014724
rosa_multiflora Rmu_co8372415.1_g000001
rosa_roxburghii Rroxscaffold_7G00208950
rosa_rugosa Rorug05G0568000
rosa_samantha Rh6AG085000 Rh6BG079400 Rh6CG074400 Rh6DG071300
rosa_wichuraiana Rw0G011950 Rw6G007630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 929
AciI CCGC 8 cut(s) 438, 569, 857, 927, 929, 995, 1001, 1032
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 617, 723, 928
AflIII ACRYGT 5 cut(s) 95, 140, 372, 422, 914
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 7 cut(s) 8, 327, 430, 446, 476, 766, 902
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 3 cut(s) 791, 890, 992
AluI AGCT 3 cut(s) 791, 890, 992
Alw21I GWGCWC 2 cut(s) 793, 994
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 114
AoxI GGCC 2 cut(s) 629, 941
ApeKI GCWGC 2 cut(s) 854, 1049
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 842
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 193, 427
AvaII GGWCC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 631
BanII GRGCYC 2 cut(s) 793, 994
Bbv12I GWGCWC 2 cut(s) 793, 994
BbvI GCAGC 2 cut(s) 841, 1061
BccI CCATC 5 cut(s) 197, 206, 410, 933, 974
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 4 cut(s) 168, 485, 603, 671
BfoI RGCGCY 1 cut(s) 803
BisI GCNGC 4 cut(s) 570, 855, 927, 1050
BlsI GCNGC 4 cut(s) 571, 856, 928, 1051
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 3 cut(s) 161, 556, 841
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 204, 632, 927
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 617, 723, 928
Bse118I RCCGGY 2 cut(s) 287, 448
Bse1I ACTGG 2 cut(s) 596, 632
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 518
BseDI CCNNGG 3 cut(s) 204, 632, 927
BseGI GGATG 2 cut(s) 680, 865
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 3 cut(s) 617, 723, 928
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 2 cut(s) 596, 632
BseRI GAGGAG 1 cut(s) 1002
BseXI GCAGC 2 cut(s) 841, 1061
Bsh1236I CGCG 1 cut(s) 929
BshFI GGCC 2 cut(s) 631, 943
BshTI ACCGGT 1 cut(s) 287
BsiHKAI GWGCWC 2 cut(s) 793, 994
BsiSI CCGG 2 cut(s) 288, 449
BslFI GGGAC 2 cut(s) 638, 945
BslI CCNNNNNNNGG 3 cut(s) 617, 723, 928
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 2 cut(s) 638, 945
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 2 cut(s) 631, 943
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 793, 994
Bsp143I GATC 1 cut(s) 711
BspACI CCGC 8 cut(s) 438, 569, 857, 927, 929, 995, 1001, 1032
BspANI GGCC 2 cut(s) 631, 943
BspCNI CTCAG 1 cut(s) 899
BspFNI CGCG 1 cut(s) 929
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 719
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 2 cut(s) 287, 448
BsrI ACTGG 2 cut(s) 596, 632
BssAI RCCGGY 2 cut(s) 287, 448
BssECI CCNNGG 3 cut(s) 204, 632, 927
BssMI GATC 1 cut(s) 711
BssT1I CCWWGG 2 cut(s) 204, 632
Bst4CI ACNGT 2 cut(s) 116, 666
Bst6I CTCTTC 3 cut(s) 26, 42, 900
BstC8I GCNNGC 3 cut(s) 574, 999, 1054
BstDEI CTNAG 1 cut(s) 886
BstDSI CCRYGG 1 cut(s) 927
BstF5I GGATG 2 cut(s) 680, 865
BstFNI CGCG 1 cut(s) 929
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 1 cut(s) 714
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 1 cut(s) 711
BstMWI GCNNNNNNNGC 4 cut(s) 302, 797, 998, 1058
BstNSI RCATGY 6 cut(s) 99, 144, 376, 426, 876, 918
BstUI CGCG 1 cut(s) 929
BstV1I GCAGC 2 cut(s) 841, 1061
BsuRI GGCC 2 cut(s) 631, 943
BtgI CCRYGG 1 cut(s) 927
BtgZI GCGATG 2 cut(s) 952, 993
BtsCI GGATG 2 cut(s) 680, 865
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 153
Cac8I GCNNGC 3 cut(s) 574, 999, 1054
CaiI CAGNNNCTG 1 cut(s) 114
CfoI GCGC 1 cut(s) 802
Cfr10I RCCGGY 2 cut(s) 287, 448
Cfr13I GGNCC 1 cut(s) 285
Cfr42I CCGCGG 1 cut(s) 930
CpoI CGGWCCG 1 cut(s) 285
CseI GACGC 1 cut(s) 128
CspAI ACCGGT 1 cut(s) 287
CspI CGGWCCG 1 cut(s) 285
CviAII CATG 9 cut(s) 96, 141, 237, 373, 423, 589, 646, 873, 915
DdeI CTNAG 1 cut(s) 886
DpnI GATC 1 cut(s) 713
DpnII GATC 1 cut(s) 711
EaeI YGGCCR 1 cut(s) 629
Eam1104I CTCTTC 3 cut(s) 26, 42, 900
EarI CTCTTC 3 cut(s) 26, 42, 900
Ecl136II GAGCTC 2 cut(s) 791, 992
Eco130I CCWWGG 2 cut(s) 204, 632
Eco24I GRGCYC 2 cut(s) 793, 994
Eco31I GGTCTC 1 cut(s) 554
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 285
Eco53kI GAGCTC 2 cut(s) 791, 992
EcoICRI GAGCTC 2 cut(s) 791, 992
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 204, 632
EcoT38I GRGCYC 2 cut(s) 793, 994
ErhI CCWWGG 2 cut(s) 204, 632
FaeI CATG 9 cut(s) 99, 144, 240, 376, 426, 592, 649, 876, 918
FaqI GGGAC 2 cut(s) 638, 945
FatI CATG 9 cut(s) 95, 140, 236, 372, 422, 588, 645, 872, 914
FauI CCCGC 1 cut(s) 922
Fnu4HI GCNGC 4 cut(s) 570, 855, 927, 1050
FokI GGATG 2 cut(s) 667, 872
FriOI GRGCYC 2 cut(s) 793, 994
Fsp4HI GCNGC 4 cut(s) 570, 855, 927, 1050
FspBI CTAG 4 cut(s) 168, 485, 603, 671
GlaI GCGC 1 cut(s) 801
GluI GCNGC 4 cut(s) 570, 855, 927, 1050
GsuI CTGGAG 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 2 cut(s) 631, 943
HapII CCGG 2 cut(s) 288, 449
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 802
Hin1II CATG 9 cut(s) 99, 144, 240, 376, 426, 592, 649, 876, 918
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 4 cut(s) 323, 686, 742, 902
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 2 cut(s) 288, 449
HphI GGTGA 2 cut(s) 193, 427
Hpy166II GTNNAC 2 cut(s) 243, 838
Hpy188I TCNGA 1 cut(s) 685
Hpy188III TCNNGA 4 cut(s) 177, 485, 603, 899
Hpy8I GTNNAC 2 cut(s) 243, 838
HpyAV CCTTC 4 cut(s) 35, 80, 701, 760
HpyCH4III ACNGT 2 cut(s) 116, 666
HpyCH4V TGCA 2 cut(s) 1049, 1056
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 797, 998, 1058
HpyF3I CTNAG 1 cut(s) 886
Hsp92II CATG 9 cut(s) 99, 144, 240, 376, 426, 592, 649, 876, 918
HspAI GCGC 1 cut(s) 800
KspAI GTTAAC 1 cut(s) 243
KspI CCGCGG 1 cut(s) 930
Kzo9I GATC 1 cut(s) 711
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 5 cut(s) 48, 179, 310, 989, 997
Lsp1109I GCAGC 2 cut(s) 841, 1061
LweI GCATC 3 cut(s) 161, 556, 841
MaeI CTAG 4 cut(s) 168, 485, 603, 671
MaeIII GTNAC 3 cut(s) 116, 508, 917
MalI GATC 1 cut(s) 713
MboI GATC 1 cut(s) 711
MboII GAAGA 6 cut(s) 13, 29, 42, 502, 536, 887
MhlI GDGCHC 2 cut(s) 793, 994
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 2 cut(s) 430, 1021
MluNI TGGCCA 1 cut(s) 631
MnlI CCTC 6 cut(s) 82, 350, 493, 614, 752, 980
Mox20I TGGCCA 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 842
MscI TGGCCA 1 cut(s) 631
MseI TTAA 4 cut(s) 225, 242, 456, 464
MslI CAYNNNNRTG 1 cut(s) 557
Msp20I TGGCCA 1 cut(s) 631
MspA1I CMGCKG 1 cut(s) 929
MspI CCGG 2 cut(s) 288, 449
Mva1269I GAATGC 1 cut(s) 612
MvnI CGCG 1 cut(s) 929
MwoI GCNNNNNNNGC 4 cut(s) 302, 797, 998, 1058
NdeII GATC 1 cut(s) 711
NlaIII CATG 9 cut(s) 99, 144, 240, 376, 426, 592, 649, 876, 918
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 6 cut(s) 99, 144, 376, 426, 876, 918
OliI CACNNNNGTG 1 cut(s) 557
PciI ACATGT 5 cut(s) 95, 140, 372, 422, 914
PciSI GCTCTTC 1 cut(s) 42
PctI GAATGC 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 4 cut(s) 323, 686, 742, 902
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 4 cut(s) 571, 856, 928, 1051
PscI ACATGT 5 cut(s) 95, 140, 372, 422, 914
Psp124BI GAGCTC 2 cut(s) 793, 994
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 557
Rsr2I CGGWCCG 1 cut(s) 285
RsrII CGGWCCG 1 cut(s) 285
SacI GAGCTC 2 cut(s) 793, 994
SacII CCGCGG 1 cut(s) 930
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 4 cut(s) 225, 242, 456, 464
SatI GCNGC 4 cut(s) 570, 855, 927, 1050
Sau3AI GATC 1 cut(s) 711
Sau96I GGNCC 1 cut(s) 285
SduI GDGCHC 2 cut(s) 793, 994
SetI ASST 6 cut(s) 169, 550, 771, 793, 892, 994
SfaNI GCATC 3 cut(s) 161, 556, 841
Sfr303I CCGCGG 1 cut(s) 930
SgrBI CCGCGG 1 cut(s) 930
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 430, 1021
SsiI CCGC 8 cut(s) 438, 569, 857, 927, 929, 995, 1001, 1032
SspMI CTAG 4 cut(s) 168, 485, 603, 671
SstI GAGCTC 2 cut(s) 793, 994
StyI CCWWGG 2 cut(s) 204, 632
TaaI ACNGT 2 cut(s) 116, 666
TaqI TCGA 4 cut(s) 369, 414, 522, 960
TasI AATT 2 cut(s) 430, 1021
TauI GCSGC 2 cut(s) 572, 929
TfiI GAWTC 4 cut(s) 323, 686, 742, 902
Tru1I TTAA 4 cut(s) 225, 242, 456, 464
Tru9I TTAA 4 cut(s) 225, 242, 456, 464
TscAI CASTG 2 cut(s) 137, 160
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 854, 1049
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 225, 577, 940
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 2 cut(s) 137, 160
VpaK11BI GGWCC 1 cut(s) 285
XbaI TCTAGA 2 cut(s) 484, 602
XceI RCATGY 6 cut(s) 99, 144, 376, 426, 876, 918
XcmI CCANNNNNNNNNTGG 2 cut(s) 344, 413
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 4 cut(s) 168, 485, 603, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.