Rmu_co8372415.1_g000001

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8372415.1
OG0011249
Physical Location & Seq
Forward (+)
27 .. 1129
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8372415.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
atgtatcagcaacctgccattagagaactgaaagaaattacagcatttcttgaagcaaacccgtctgagattgtgacaatcataattgaagactacgttacatcaccaaagggcttgaccaaagtgtttgatgctgctggcttgagaaaattctggttcccagtttcaagaatgcccaaaaagggtggagattggccaacagttgctgatatgatccagaaaaatcagcgtttgctagtcttcacttctaagcaaagaaaagaggctgatgaaggcattgcctaccagtggagttacatggtggaaaaccaatatggaaatggtggcatgaaagctggatcatgtccaaaccgtgcggaatcatcagccatgaacacaacaacgagatcattagtcctagtgaactatttccgagatgtcccaaccctccctcaatcttgcaaagataattcagattcattgcttgacatggttaatacctgttacaatgtggctgctaaaagatggcctaacttcattgccgttgatttttacaagagaagtgatggtggcggcgctcctaaagctgtagatgtggtaaatggtcatttagtttgcgggtgtccaagcatagccaactgcagggcgaatgtgagctatggaacatgcccgcctgaggctgctatagtcccggaaagtgcaccagaaattggtgctagcagctttggttatccaaatagaggacca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.55

Weight (kDa)

8.1

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49740 AT3G19310
fragaria_vesca FvH4_2g05830 FvH4_2g05830 FvH4_2g05830 FvH4_2g05830
malus_domestica MD05G1082900.v1.1
prunus_persica Prupe.8G127500_v2.0.a1
pyrus_communis pycom05g07800
rosa_chinensis RchiOBHm_Chr6g0257791
rosa_laevigata RLG00000014724
rosa_multiflora Rmu_co8372415.1_g000001
rosa_roxburghii Rroxscaffold_7G00208950
rosa_rugosa Rorug05G0568000
rosa_samantha Rh6AG085000 Rh6BG079400 Rh6CG074400 Rh6DG071300
rosa_wichuraiana Rw0G011950 Rw6G007630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 4 cut(s) 356, 552, 597, 650
AclWI GGATC 2 cut(s) 208, 346
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 1 cut(s) 149
AfiI CCNNNNNNNGG 6 cut(s) 182, 288, 621, 655, 689, 719
AgsI TTSAA 3 cut(s) 53, 89, 168
AluBI AGCT 4 cut(s) 335, 566, 636, 702
AluI AGCT 4 cut(s) 335, 566, 636, 702
Alw21I GWGCWC 1 cut(s) 682
Alw44I GTGCAC 1 cut(s) 678
AlwI GGATC 2 cut(s) 208, 346
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 2 cut(s) 194, 506
ApaLI GTGCAC 1 cut(s) 678
ApeKI GCWGC 4 cut(s) 134, 494, 659, 699
ApoI RAATTY 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 722
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 695
AvaII GGWCC 1 cut(s) 722
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 682
BalI TGGCCA 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 96, 232
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 4 cut(s) 121, 481, 646, 711
BccI CCATC 2 cut(s) 498, 539
BceAI ACGGC 1 cut(s) 506
BcnI CCSGG 1 cut(s) 671
BfaI CTAG 3 cut(s) 236, 398, 696
BfmI CTRYAG 3 cut(s) 567, 619, 663
BfoI RGCGCY 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 5 cut(s) 135, 495, 553, 660, 700
BlsI GCNGC 5 cut(s) 136, 496, 554, 661, 701
Bme1390I CCNGG 1 cut(s) 671
Bme18I GGWCC 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 722
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 671
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 121
BmtI GCTAGC 1 cut(s) 699
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 96, 232
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 671
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 288, 621, 655, 689, 719
Bse1I ACTGG 2 cut(s) 161, 286
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 3 cut(s) 276, 458, 516
BseLI CCNNNNNNNGG 6 cut(s) 182, 288, 621, 655, 689, 719
BseMI GCAATG 3 cut(s) 276, 458, 516
BseMII CTCAG 2 cut(s) 57, 645
BseNI ACTGG 2 cut(s) 161, 286
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 4 cut(s) 121, 481, 646, 711
BshFI GGCC 2 cut(s) 196, 508
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 2 cut(s) 404, 653
BslI CCNNNNNNNGG 6 cut(s) 182, 288, 621, 655, 689, 719
BsmFI GGGAC 2 cut(s) 404, 653
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 2 cut(s) 196, 508
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 3 cut(s) 213, 338, 386
BspACI CCGC 4 cut(s) 356, 552, 597, 650
BspANI GGCC 2 cut(s) 196, 508
BspCNI CTCAG 2 cut(s) 58, 646
BspLI GGNNCC 1 cut(s) 158
BspMAI CTGCAG 1 cut(s) 623
BspMI ACCTGC 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 699
BspPI GGATC 2 cut(s) 208, 346
BsrDI GCAATG 3 cut(s) 276, 458, 516
BsrI ACTGG 2 cut(s) 161, 286
BssMI GATC 3 cut(s) 213, 338, 386
Bst4CI ACNGT 2 cut(s) 202, 353
BstC8I GCNNGC 3 cut(s) 139, 650, 697
BstDEI CTNAG 3 cut(s) 66, 249, 654
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 3 cut(s) 216, 341, 389
BstMBI GATC 3 cut(s) 213, 338, 386
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 669
BstSFI CTRYAG 3 cut(s) 567, 619, 663
BstSLI GKGCMC 1 cut(s) 682
BstV1I GCAGC 4 cut(s) 121, 481, 646, 711
BstV2I GAAGAC 2 cut(s) 96, 232
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 2 cut(s) 196, 508
BtsIMutI CAGTG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 139, 650, 697
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 722
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 6 cut(s) 298, 328, 342, 370, 469, 645
DdeI CTNAG 3 cut(s) 66, 249, 654
DpnI GATC 3 cut(s) 215, 340, 388
DpnII GATC 3 cut(s) 213, 338, 386
EaeI YGGCCR 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 654
FaeI CATG 6 cut(s) 301, 331, 345, 373, 472, 648
FaqI GGGAC 2 cut(s) 404, 653
FatI CATG 6 cut(s) 297, 327, 341, 369, 468, 644
FauI CCCGC 2 cut(s) 590, 657
Fnu4HI GCNGC 5 cut(s) 135, 495, 553, 660, 700
Fsp4HI GCNGC 5 cut(s) 135, 495, 553, 660, 700
FspBI CTAG 3 cut(s) 236, 398, 696
GlaI GCGC 1 cut(s) 556
GluI GCNGC 5 cut(s) 135, 495, 553, 660, 700
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 2 cut(s) 196, 508
HapII CCGG 1 cut(s) 671
HhaI GCGC 1 cut(s) 557
Hin1II CATG 6 cut(s) 301, 331, 345, 373, 472, 648
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HinfI GANTC 2 cut(s) 359, 455
HpaII CCGG 1 cut(s) 671
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 403, 680
Hpy188I TCNGA 3 cut(s) 67, 413, 454
Hpy188III TCNNGA 3 cut(s) 50, 168, 217
Hpy8I GTNNAC 2 cut(s) 403, 680
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 202, 353
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 441, 621, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 3 cut(s) 66, 249, 654
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 6 cut(s) 301, 331, 345, 373, 472, 648
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 3 cut(s) 213, 338, 386
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 4 cut(s) 121, 481, 646, 711
LweI GCATC 1 cut(s) 121
MaeI CTAG 3 cut(s) 236, 398, 696
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 4 cut(s) 73, 97, 293, 482
MalI GATC 3 cut(s) 215, 340, 388
MboI GATC 3 cut(s) 213, 338, 386
MboII GAAGA 2 cut(s) 101, 232
MhlI GDGCHC 1 cut(s) 682
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 5 cut(s) 36, 84, 149, 448, 687
MluNI TGGCCA 1 cut(s) 196
MnlI CCTC 5 cut(s) 256, 437, 441, 649, 713
Mox20I TGGCCA 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 196
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 196
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 563
NciI CCSGG 1 cut(s) 671
NdeII GATC 3 cut(s) 213, 338, 386
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 6 cut(s) 301, 331, 345, 373, 472, 648
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 648
PctI GAATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 359, 455
PflMI CCANNNNNTGG 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 669
PkrI GCNGC 5 cut(s) 136, 496, 554, 661, 701
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 722
PstI CTGCAG 1 cut(s) 623
PstNI CAGNNNCTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 5 cut(s) 135, 495, 553, 660, 700
Sau3AI GATC 3 cut(s) 213, 338, 386
Sau96I GGNCC 1 cut(s) 722
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 1 cut(s) 682
SetI ASST 7 cut(s) 16, 99, 337, 482, 568, 638, 704
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 3 cut(s) 567, 619, 663
SinI GGWCC 1 cut(s) 722
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 5 cut(s) 36, 84, 149, 448, 687
SsiI CCGC 4 cut(s) 356, 552, 597, 650
SspMI CTAG 3 cut(s) 236, 398, 696
StyD4I CCNGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 202, 353
TaiI ACGT 1 cut(s) 99
TasI AATT 5 cut(s) 36, 84, 149, 448, 687
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 2 cut(s) 359, 455
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 4 cut(s) 134, 494, 659, 699
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 5 cut(s) 285, 344, 386, 447, 505
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 3 cut(s) 236, 398, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.