FvH4_2g05830

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
4835336 .. 4839576
4241 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05830.t2

Sequence Viewer

Length: 1203 bp
ATGGAGCAGAGACTCGTGCTCATTGCAACTCTGTTTTCTTTGCTTTGTTTCCTTCCTGTTTCTTCAGCCCGCAAGGAGGGACAGAAATGCATCAAGAACAGTGACTGCGACGCAGGATTGCACTGCGAGACTTGCGTTGCAGACAACAATTTTGTGCCAAAGTGCACGAGGGTAAAACCCACAAGTCCAATATCTGAGGTGAAAACGCTGCCGTTTAACAAGTATTCTTGGTTAACAACCCACAATTCGTTTGCGATACTCGGGCAGAAGTCGGCCACGAAATCTGTGATTTTGGCTCCGACGAACCAGCAGGACTCCATTACCGATCAGCTCAATAATGGTGTTAGAGGCTTAATGTTGGACATGTATGACTATTTAGGTGACATTTGGTTATGTCACTCGTACGGTGGCCAATGCTACAACTACACAGCTTTTCAACCTGCCATTGGAGAACTAAAAGAAATTACGGCATTTCTTGAAGCAAACCCGTCTGAGATTGTGACGATTATAATTGAAGACTATGTTACATCACCAAAGGGGTTGACAAAAGTGTTTGATGCTGCTGGTTTGAGAAAATTCTGGTTTCCAGTTTCAAGAATGCCCAAAAGGGGTGGAGATTGGCCAACAGTTGCTGATATGATCCAGAAAAATCAGCGTTTGCTAGTCTTCACTTCCAAGCAAAGAAAAGAGGCTGATGAAGGCATTGCTTACCAGTGGAGTTATATGGTAGAAAACCAATATGGAAATGGTGGCATGAAAGCCGGATCATGTCCAAACCGTGCGGAATCATCAGCCATGAACACAACAACGAGATCATTAGTCCTAGTGAACTATTTCCGAGATACCCCAACCCTCCCTCAATCTTGCAAAGATAATTCAGATTCGTTGCTTAACATGGTTAATACCTGTTACAATGTGGCTGGTAAAAGATGGCCTAACTTCATTGCCGTTGATTTTTACAAGAGAAGCGATGGTGGCGGTGCTCCTAAAGCTGTAGATGTGGTAAATGGTCATTTAGTTTGCGGGTGTGCAAGCATCGCCGATTGCAAGGCGAATGTGAGCTACGGAACCTGCCCACCTGAGGCTGCTACAGTCCCGGAAGGTGCACCAGAAACGAGTGATAGTAGCTTTAGTTACTCAAACAGAGGGCCAGTGTTGTTTGGAACTGTTCTTGTGATCCTTTACTTCTTATTGTCAGTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

43.97

Weight (kDa)

7.4

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 59 - 112 9.4e-19 PI-PLC-like catalytic domain
PI-PLC_cat PF26178 113 - 317 1.2e-109 PI-PLC-like catalytic domain
PI-PLC_X PF26146 118 - 291 2.3e-17 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011249)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
Acc36I ACCTGC 2 cut(s) 448, 1079
AciI CCGC 4 cut(s) 70, 782, 978, 1023
AclWI GGATC 3 cut(s) 634, 772, 1171
AcoI YGGCCR 3 cut(s) 273, 409, 620
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 4 cut(s) 76, 446, 608, 1081
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 4 cut(s) 437, 479, 515, 594
AluBI AGCT 5 cut(s) 331, 431, 992, 1062, 1128
AluI AGCT 5 cut(s) 331, 431, 992, 1062, 1128
Alw21I GWGCWC 4 cut(s) 21, 167, 985, 1108
Alw26I GTCTC 2 cut(s) 4, 122
Alw44I GTGCAC 2 cut(s) 163, 1104
AlwI GGATC 3 cut(s) 634, 772, 1171
AlwNI CAGNNNCTG 2 cut(s) 105, 632
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 5 cut(s) 273, 409, 620, 932, 1148
ApaLI GTGCAC 2 cut(s) 163, 1104
ApeKI GCWGC 3 cut(s) 208, 560, 1085
ApoI RAATTY 1 cut(s) 575
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 1 cut(s) 833
AspS9I GGNCC 1 cut(s) 1148
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 3 cut(s) 211, 392, 522
AvaI CYCGRG 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 1080
BaeGI GKGCMC 2 cut(s) 167, 1108
BalI TGGCCA 2 cut(s) 411, 622
BauI CACGAG 2 cut(s) 14, 166
BbsI GAAGAC 2 cut(s) 522, 658
Bbv12I GWGCWC 4 cut(s) 21, 167, 985, 1108
BbvI GCAGC 3 cut(s) 195, 547, 1072
BccI CCATC 2 cut(s) 924, 965
BceAI ACGGC 3 cut(s) 196, 483, 932
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 2 cut(s) 4, 122
BfaI CTAG 2 cut(s) 662, 824
BfmI CTRYAG 2 cut(s) 993, 1089
BfuAI ACCTGC 2 cut(s) 448, 1079
BisI GCNGC 3 cut(s) 209, 561, 1086
BlsI GCNGC 3 cut(s) 210, 562, 1087
Bme1390I CCNGG 1 cut(s) 1097
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 1148
BmiI GGNNCC 2 cut(s) 297, 1069
BmrFI CCNGG 1 cut(s) 1097
BmsI GCATC 3 cut(s) 99, 547, 1044
BpiI GAAGAC 2 cut(s) 522, 658
BpuMI CCSGG 1 cut(s) 1097
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 446, 608, 1081
Bse1I ACTGG 3 cut(s) 587, 712, 1151
Bse21I CCTNAGG 1 cut(s) 1080
Bse3DI GCAATG 3 cut(s) 21, 702, 942
BseLI CCNNNNNNNGG 4 cut(s) 76, 446, 608, 1081
BseMI GCAATG 3 cut(s) 21, 702, 942
BseMII CTCAG 3 cut(s) 186, 483, 1071
BseNI ACTGG 3 cut(s) 587, 712, 1151
BseSI GKGCMC 2 cut(s) 167, 1108
BseXI GCAGC 3 cut(s) 195, 547, 1072
BshFI GGCC 5 cut(s) 275, 411, 622, 934, 1150
BsiHKAI GWGCWC 4 cut(s) 21, 167, 985, 1108
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 762, 1097
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 2 cut(s) 93, 1079
BslI CCNNNNNNNGG 4 cut(s) 76, 446, 608, 1081
BsmAI GTCTC 2 cut(s) 4, 122
BsmFI GGGAC 2 cut(s) 93, 1079
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 5 cut(s) 275, 411, 622, 934, 1150
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 4 cut(s) 21, 167, 985, 1108
Bsp143I GATC 5 cut(s) 325, 639, 764, 812, 1176
BspACI CCGC 4 cut(s) 70, 782, 978, 1023
BspANI GGCC 5 cut(s) 275, 411, 622, 934, 1150
BspCNI CTCAG 3 cut(s) 187, 484, 1072
BspLI GGNNCC 2 cut(s) 297, 1069
BspMI ACCTGC 2 cut(s) 448, 1079
BspPI GGATC 3 cut(s) 634, 772, 1171
BsrDI GCAATG 3 cut(s) 21, 702, 942
BsrI ACTGG 3 cut(s) 587, 712, 1151
BssMI GATC 5 cut(s) 325, 639, 764, 812, 1176
BssSI CACGAG 2 cut(s) 14, 166
Bst2BI CACGAG 2 cut(s) 14, 166
Bst4CI ACNGT 6 cut(s) 101, 407, 628, 779, 1093, 1168
BstC8I GCNNGC 2 cut(s) 70, 1033
BstDEI CTNAG 3 cut(s) 195, 492, 1080
BstKTI GATC 5 cut(s) 328, 642, 767, 815, 1179
BstMAI GTCTC 2 cut(s) 4, 122
BstMBI GATC 5 cut(s) 325, 639, 764, 812, 1176
BstMWI GCNNNNNNNGC 4 cut(s) 132, 975, 989, 1037
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 1095
BstSFI CTRYAG 2 cut(s) 993, 1089
BstSLI GKGCMC 2 cut(s) 167, 1108
BstV1I GCAGC 3 cut(s) 195, 547, 1072
BstV2I GAAGAC 2 cut(s) 522, 658
Bsu36I CCTNAGG 1 cut(s) 1080
BsuRI GGCC 5 cut(s) 275, 411, 622, 934, 1150
BtgZI GCGATG 2 cut(s) 984, 1021
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 5 cut(s) 106, 121, 719, 1158, 1203
BveI ACCTGC 2 cut(s) 448, 1079
Cac8I GCNNGC 2 cut(s) 70, 1033
CaiI CAGNNNCTG 2 cut(s) 105, 632
Cfr13I GGNCC 1 cut(s) 1148
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 5 cut(s) 364, 754, 768, 796, 895
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 195, 492, 1080
DpnI GATC 5 cut(s) 327, 641, 766, 814, 1178
DpnII GATC 5 cut(s) 325, 639, 764, 812, 1176
EaeI YGGCCR 3 cut(s) 273, 409, 620
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 92
FaeI CATG 5 cut(s) 367, 757, 771, 799, 898
FaqI GGGAC 2 cut(s) 93, 1079
FatI CATG 5 cut(s) 363, 753, 767, 795, 894
FauI CCCGC 2 cut(s) 77, 1016
Fnu4HI GCNGC 3 cut(s) 209, 561, 1086
Fsp4HI GCNGC 3 cut(s) 209, 561, 1086
FspBI CTAG 2 cut(s) 662, 824
GluI GCNGC 3 cut(s) 209, 561, 1086
HaeIII GGCC 5 cut(s) 275, 411, 622, 934, 1150
HapII CCGG 2 cut(s) 762, 1097
HgaI GACGC 1 cut(s) 119
Hin1II CATG 5 cut(s) 367, 757, 771, 799, 898
HincII GTYRAC 2 cut(s) 234, 543
HindII GTYRAC 2 cut(s) 234, 543
HinfI GANTC 4 cut(s) 12, 314, 785, 881
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 2 cut(s) 762, 1097
HphI GGTGA 3 cut(s) 211, 392, 522
Hpy166II GTNNAC 5 cut(s) 165, 234, 543, 829, 1106
Hpy188I TCNGA 5 cut(s) 196, 300, 493, 839, 880
Hpy188III TCNNGA 4 cut(s) 94, 476, 594, 643
Hpy8I GTNNAC 5 cut(s) 165, 234, 543, 829, 1106
Hpy99I CGWCG 2 cut(s) 113, 304
HpyAV CCTTC 3 cut(s) 62, 692, 1094
HpyCH4III ACNGT 6 cut(s) 101, 407, 628, 779, 1093, 1168
HpyCH4V TGCA 9 cut(s) 26, 90, 121, 140, 165, 867, 1031, 1047, 1106
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 975, 989, 1037
HpyF3I CTNAG 3 cut(s) 195, 492, 1080
Hsp92II CATG 5 cut(s) 367, 757, 771, 799, 898
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 5 cut(s) 325, 639, 764, 812, 1176
LmnI GCTCC 3 cut(s) 4, 301, 988
Lsp1109I GCAGC 3 cut(s) 195, 547, 1072
LweI GCATC 3 cut(s) 99, 547, 1044
MaeI CTAG 2 cut(s) 662, 824
MaeIII GTNAC 7 cut(s) 101, 380, 395, 499, 523, 908, 1133
MalI GATC 5 cut(s) 327, 641, 766, 814, 1178
MboI GATC 5 cut(s) 325, 639, 764, 812, 1176
MboII GAAGA 3 cut(s) 54, 527, 658
MhlI GDGCHC 4 cut(s) 21, 167, 985, 1108
MlsI TGGCCA 2 cut(s) 411, 622
MluCI AATT 6 cut(s) 148, 244, 462, 510, 575, 874
MluNI TGGCCA 2 cut(s) 411, 622
MlyI GAGTC 2 cut(s) 6, 308
MmeI TCCRAC 2 cut(s) 323, 339
MnlI CCTC 9 cut(s) 70, 162, 190, 341, 682, 863, 867, 1075, 1139
Mox20I TGGCCA 2 cut(s) 411, 622
Mph1103I ATGCAT 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 833
MscI TGGCCA 2 cut(s) 411, 622
MseI TTAA 5 cut(s) 216, 233, 353, 891, 900
Msp20I TGGCCA 2 cut(s) 411, 622
MspI CCGG 2 cut(s) 762, 1097
MspR9I CCNGG 1 cut(s) 1097
Mva1269I GAATGC 1 cut(s) 603
MwoI GCNNNNNNNGC 4 cut(s) 132, 975, 989, 1037
NciI CCSGG 1 cut(s) 1097
NdeII GATC 5 cut(s) 325, 639, 764, 812, 1176
NlaIII CATG 5 cut(s) 367, 757, 771, 799, 898
NlaIV GGNNCC 2 cut(s) 297, 1069
NmuCI GTSAC 4 cut(s) 101, 380, 395, 499
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 367
PciI ACATGT 1 cut(s) 363
PctI GAATGC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 2 cut(s) 785, 881
Pfl23II CGTACG 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 1095
PkrI GCNGC 3 cut(s) 210, 562, 1087
PleI GAGTC 2 cut(s) 6, 308
PpsI GAGTC 2 cut(s) 6, 308
PscI ACATGT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 509
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 2 cut(s) 297, 1069
PspPI GGNCC 1 cut(s) 1148
PstNI CAGNNNCTG 2 cut(s) 105, 632
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 5 cut(s) 216, 233, 353, 891, 900
SatI GCNGC 3 cut(s) 209, 561, 1086
Sau3AI GATC 5 cut(s) 325, 639, 764, 812, 1176
Sau96I GGNCC 1 cut(s) 1148
SchI GAGTC 2 cut(s) 6, 308
ScrFI CCNGG 1 cut(s) 1097
SduI GDGCHC 4 cut(s) 21, 167, 985, 1108
SfaNI GCATC 3 cut(s) 99, 547, 1044
SfcI CTRYAG 2 cut(s) 993, 1089
Sse9I AATT 6 cut(s) 148, 244, 462, 510, 575, 874
SsiI CCGC 4 cut(s) 70, 782, 978, 1023
SspMI CTAG 2 cut(s) 662, 824
StyD4I CCNGG 1 cut(s) 1095
TaaI ACNGT 6 cut(s) 101, 407, 628, 779, 1093, 1168
TasI AATT 6 cut(s) 148, 244, 462, 510, 575, 874
TfiI GAWTC 2 cut(s) 785, 881
Tru1I TTAA 5 cut(s) 216, 233, 353, 891, 900
Tru9I TTAA 5 cut(s) 216, 233, 353, 891, 900
TscAI CASTG 5 cut(s) 106, 128, 719, 1158, 1203
TseFI GTSAC 4 cut(s) 101, 380, 395, 499
TseI GCWGC 3 cut(s) 208, 560, 1085
Tsp45I GTSAC 4 cut(s) 101, 380, 395, 499
TspDTI ATGAA 4 cut(s) 711, 770, 812, 931
TspGWI ACGGA 1 cut(s) 1080
TspRI CASTG 5 cut(s) 106, 128, 719, 1158, 1203
VneI GTGCAC 2 cut(s) 163, 1104
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 2 cut(s) 662, 824
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.