Rh6CG074400

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011249
Physical Location & Seq
Reverse (-)
7693562 .. 7698211
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG074400.1

Sequence Viewer

Length: 882 bp
ATGATCATCTTGCAGAATGGTGTTAGAGGCTTAATGCTGGACATGTATGACTATTTAGGTGACATTTGGTTATGTCACTCGTACGGTGGCAACTGCTACAACTACACAGCTTTTCAACCTGCCATTAGAGAACTGAAAGAAATTACAGCATTTCTTGAAGCAAACCCGTCTGAGATTGTGACAATCATAATTGAAGACTACGTTACATCACCAAAGGGCTTGACCAAAGTGTTTGATGCTGCTGGCTTGAGAAAATTCTGGTTCCCAGTTTCAAGAATGCCCAAAAAGGGTGGAGATTGGCCAACAGTTGCTGATATGATCCAGAAAAATCAGCGTTTGCTAGTCTTCACTTCTAAGCAAAGAAAAGAGGCTGATGAAGGCATTGCCTACCAGTGGAGTTACATGGTGGAAAACCAATATGGAAATGGTGGCATGAAAGCTGGATCATGTCCAAACCGTGCGGAATCATCAGCCATGAACACAACAACGAGATCATTAGTCCTAGTGAACTATTTCCGAGATGTCCCAACCCTCCCTCAATCTTGCAAAGATAATTCAGATTCATTGCTTGACATGGTTAATACCTGTTACAATGTGGCTGCTAAAAGATGGCCTAACTTCATTGCCGTTGATTTTTACAAGAGAAGTGATGGTGGCGGCGCTCCTAAAGCTGTAGATGTGGTAAACGGTCATTTAGTTTGCGGGTGTCCAAGCATAGCCAACTGCAGGGCGAATGTAAGCTATGGAACATGCCCGCCTGAGGCTGCTATAGTCCCGGAAAGTGCACCAGAAATTGGTGCTAGCAGCTTTGGTTATTCAAATAGAGGACCAATGTTGTATGGGCCTGTTCTTGTGACCCTTACCTTCTTGTTGTCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.29

Weight (kDa)

6.72

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 4 - 243 9.2e-136 PI-PLC-like catalytic domain
PI-PLC_X PF26146 4 - 217 2e-20 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49740 AT3G19310
fragaria_vesca FvH4_2g05830 FvH4_2g05830 FvH4_2g05830 FvH4_2g05830
malus_domestica MD05G1082900.v1.1
prunus_persica Prupe.8G127500_v2.0.a1
pyrus_communis pycom05g07800
rosa_chinensis RchiOBHm_Chr6g0257791
rosa_laevigata RLG00000014724
rosa_multiflora Rmu_co8372415.1_g000001
rosa_roxburghii Rroxscaffold_7G00208950
rosa_rugosa Rorug05G0568000
rosa_samantha Rh6AG085000 Rh6BG079400 Rh6CG074400 Rh6DG071300
rosa_wichuraiana Rw0G011950 Rw6G007630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 794
AciI CCGC 4 cut(s) 461, 657, 702, 755
AclWI GGATC 2 cut(s) 313, 451
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 5 cut(s) 287, 393, 726, 760, 794
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 5 cut(s) 116, 158, 194, 273, 819
AluBI AGCT 5 cut(s) 110, 440, 671, 741, 807
AluI AGCT 5 cut(s) 110, 440, 671, 741, 807
Alw21I GWGCWC 1 cut(s) 787
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 2 cut(s) 313, 451
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 3 cut(s) 299, 611, 842
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 4 cut(s) 239, 599, 764, 804
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 827, 842
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 2 cut(s) 71, 201
AsuNHI GCTAGC 1 cut(s) 800
AvaII GGWCC 1 cut(s) 827
AxyI CCTNAGG 1 cut(s) 759
BaeGI GKGCMC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 201, 337
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 4 cut(s) 226, 586, 751, 816
BccI CCATC 2 cut(s) 603, 644
BceAI ACGGC 1 cut(s) 611
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 776
BfaI CTAG 3 cut(s) 341, 503, 801
BfmI CTRYAG 3 cut(s) 672, 724, 768
BfoI RGCGCY 1 cut(s) 663
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 5 cut(s) 240, 600, 658, 765, 805
BlsI GCNGC 5 cut(s) 241, 601, 659, 766, 806
Bme1390I CCNGG 1 cut(s) 776
Bme18I GGWCC 1 cut(s) 827
BmgT120I GGNCC 2 cut(s) 827, 842
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 776
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 226
BmtI GCTAGC 1 cut(s) 804
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 2 cut(s) 201, 337
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 776
Bsc4I CCNNNNNNNGG 5 cut(s) 287, 393, 726, 760, 794
Bse1I ACTGG 2 cut(s) 266, 391
Bse21I CCTNAGG 1 cut(s) 759
Bse3DI GCAATG 3 cut(s) 381, 563, 621
BseLI CCNNNNNNNGG 5 cut(s) 287, 393, 726, 760, 794
BseMI GCAATG 3 cut(s) 381, 563, 621
BseMII CTCAG 2 cut(s) 162, 750
BseNI ACTGG 2 cut(s) 266, 391
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 4 cut(s) 226, 586, 751, 816
BshFI GGCC 3 cut(s) 301, 613, 844
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 1 cut(s) 776
BsiWI CGTACG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 509, 758
BslI CCNNNNNNNGG 5 cut(s) 287, 393, 726, 760, 794
BsmFI GGGAC 2 cut(s) 509, 758
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 3 cut(s) 301, 613, 844
Bsp1286I GDGCHC 1 cut(s) 787
Bsp143I GATC 4 cut(s) 3, 318, 443, 491
BspACI CCGC 4 cut(s) 461, 657, 702, 755
BspANI GGCC 3 cut(s) 301, 613, 844
BspCNI CTCAG 2 cut(s) 163, 751
BspLI GGNNCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 728
BspMI ACCTGC 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 804
BspPI GGATC 2 cut(s) 313, 451
BsrDI GCAATG 3 cut(s) 381, 563, 621
BsrI ACTGG 2 cut(s) 266, 391
BssMI GATC 4 cut(s) 3, 318, 443, 491
Bst4CI ACNGT 4 cut(s) 86, 307, 458, 689
BstC8I GCNNGC 3 cut(s) 244, 755, 802
BstDEI CTNAG 3 cut(s) 171, 354, 759
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 4 cut(s) 6, 321, 446, 494
BstMBI GATC 4 cut(s) 3, 318, 443, 491
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNSI RCATGY 2 cut(s) 46, 753
BstSCI CCNGG 1 cut(s) 774
BstSFI CTRYAG 3 cut(s) 672, 724, 768
BstSLI GKGCMC 1 cut(s) 787
BstV1I GCAGC 4 cut(s) 226, 586, 751, 816
BstV2I GAAGAC 2 cut(s) 201, 337
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 3 cut(s) 301, 613, 844
BtsIMutI CAGTG 1 cut(s) 398
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 244, 755, 802
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 827, 842
Csp6I GTAC 1 cut(s) 82
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 7 cut(s) 43, 403, 433, 447, 475, 574, 750
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 3 cut(s) 171, 354, 759
DpnI GATC 4 cut(s) 5, 320, 445, 493
DpnII GATC 4 cut(s) 3, 318, 443, 491
EaeI YGGCCR 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 827
Eco81I CCTNAGG 1 cut(s) 759
FaeI CATG 7 cut(s) 46, 406, 436, 450, 478, 577, 753
FaqI GGGAC 2 cut(s) 509, 758
FatI CATG 7 cut(s) 42, 402, 432, 446, 474, 573, 749
FauI CCCGC 2 cut(s) 695, 762
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 240, 600, 658, 765, 805
Fsp4HI GCNGC 5 cut(s) 240, 600, 658, 765, 805
FspBI CTAG 3 cut(s) 341, 503, 801
GlaI GCGC 1 cut(s) 661
GluI GCNGC 5 cut(s) 240, 600, 658, 765, 805
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 3 cut(s) 301, 613, 844
HapII CCGG 1 cut(s) 776
HhaI GCGC 1 cut(s) 662
Hin1II CATG 7 cut(s) 46, 406, 436, 450, 478, 577, 753
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 2 cut(s) 464, 560
HpaII CCGG 1 cut(s) 776
HphI GGTGA 2 cut(s) 71, 201
Hpy166II GTNNAC 3 cut(s) 508, 685, 785
Hpy188I TCNGA 3 cut(s) 172, 518, 559
Hpy188III TCNNGA 3 cut(s) 155, 273, 322
Hpy8I GTNNAC 3 cut(s) 508, 685, 785
HpyAV CCTTC 2 cut(s) 371, 874
HpyCH4III ACNGT 4 cut(s) 86, 307, 458, 689
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 13, 546, 726, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 3 cut(s) 171, 354, 759
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 7 cut(s) 46, 406, 436, 450, 478, 577, 753
HspAI GCGC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 318, 443, 491
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 4 cut(s) 226, 586, 751, 816
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 341, 503, 801
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 7 cut(s) 59, 74, 178, 202, 398, 587, 853
MalI GATC 4 cut(s) 5, 320, 445, 493
MboI GATC 4 cut(s) 3, 318, 443, 491
MboII GAAGA 2 cut(s) 206, 337
MhlI GDGCHC 1 cut(s) 787
MlsI TGGCCA 1 cut(s) 301
MluCI AATT 5 cut(s) 141, 189, 254, 553, 792
MluNI TGGCCA 1 cut(s) 301
MnlI CCTC 6 cut(s) 20, 361, 542, 546, 754, 818
Mox20I TGGCCA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 301
MseI TTAA 2 cut(s) 32, 579
Msp20I TGGCCA 1 cut(s) 301
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 776
Mva1269I GAATGC 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 668
NciI CCSGG 1 cut(s) 776
NdeII GATC 4 cut(s) 3, 318, 443, 491
NheI GCTAGC 1 cut(s) 800
NlaIII CATG 7 cut(s) 46, 406, 436, 450, 478, 577, 753
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 4 cut(s) 59, 74, 178, 853
NspI RCATGY 2 cut(s) 46, 753
PciI ACATGT 1 cut(s) 42
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 464, 560
Pfl23II CGTACG 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 794
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 5 cut(s) 241, 601, 659, 766, 806
PscI ACATGT 1 cut(s) 42
PspLI CGTACG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 2 cut(s) 827, 842
PstI CTGCAG 1 cut(s) 728
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 32, 579
SatI GCNGC 5 cut(s) 240, 600, 658, 765, 805
Sau3AI GATC 4 cut(s) 3, 318, 443, 491
Sau96I GGNCC 2 cut(s) 827, 842
ScrFI CCNGG 1 cut(s) 776
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 3 cut(s) 672, 724, 768
SinI GGWCC 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 5 cut(s) 141, 189, 254, 553, 792
SsiI CCGC 4 cut(s) 461, 657, 702, 755
SspMI CTAG 3 cut(s) 341, 503, 801
StyD4I CCNGG 1 cut(s) 774
TaaI ACNGT 4 cut(s) 86, 307, 458, 689
TaiI ACGT 1 cut(s) 204
TasI AATT 5 cut(s) 141, 189, 254, 553, 792
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 2 cut(s) 464, 560
Tru1I TTAA 2 cut(s) 32, 579
Tru9I TTAA 2 cut(s) 32, 579
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 4 cut(s) 59, 74, 178, 853
TseI GCWGC 4 cut(s) 239, 599, 764, 804
Tsp45I GTSAC 4 cut(s) 59, 74, 178, 853
TspDTI ATGAA 5 cut(s) 390, 449, 491, 552, 610
TspRI CASTG 1 cut(s) 398
Van91I CCANNNNNTGG 1 cut(s) 794
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 1 cut(s) 254
XceI RCATGY 2 cut(s) 46, 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 3 cut(s) 341, 503, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.