AT3G19310

phosphoric diester hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011249
Physical Location & Seq
Forward (+)
6694114 .. 6696357
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19310.1

Sequence Viewer

Length: 1242 bp
ATGTTTCAGAGATTCACCTTCTTTCTAACAGCTCTTCTCATTCCATGTATTCTAATTATCCTTAGCCCTTCATATGCCCTCAAGGAAGGAGAAACATGCATCGTGAGCAAGAATTGTGATCGGGGATTACACTGTGAATCGTGTCTCGCCAGCGATAGTTTCCGACCTAGATGCTCCCGAATGCAACCCATTAACCCGACCACCAAGGTAAAAGGGTTGCCTTACAACAAGTACTCATGGTTAACAACCCACAATTCATTTGCTCGAATGGGTGCAAAATCAGGCACTGGCTCTATGATTCTTGCACCTTCCAACCAACAAGATTCAATCACAAGCCAACTCCTTAATGGTGTTAGAGGGTTTATGCTTGACTTGTACGACTTCCAAAACGATATATGGCTTTGCCATTCTTACGGTGGAAATTGTTTCAATTACACCGCATTCCAACCCGCGGTTAACATTTTAAAGGAGTTTCAAGTGTTTCTAGACAAGAACAAGGATGTTGTTGTAACGCTTATCCTCGAGGACTATGTGAAATCTCCTAATGGTTTAACCAGAGTGTTTGATGCATCCGGATTACGAAACTTCATGTTTCCGGTATCAAGAATGCCTAAAAACGGAGAAGATTGGCCTACTCTTGATGATATGATATGTCAGAACCAACGATTGCTTGTTTTCACGTCTAATCCTCAAAAAGAAGCGTCGGAGGGAATTGCGTTTATGTGGAGATACATGATAGAGAATCAATATGGAGATGGAGGGATGAAGGCTGGAGTGTGTACCAATAGACCGGAATCAGTTGCAATGGGAGATAGATCAAGATCACTTATTCTAGTCAATTATTTTCCGGATACTGCAGATGTGATCGGATCTTGTAAGCAGAACTCTGCTCCTCTTCTTGACACCGTCAAAAACTGTCAAGAAGCCTCGGGAAAACGTTGGCCTAACTTCATTGCAGTCGATTTCTACAAGAGAAGCGATGGTGGAGGAGCTCCAAAAGCAGTGGATGTTGCAAACGGTCATGCAGTTTGCGGCTGCGAAGATATAGCCGCTTGTAAAGAGAACATGCCATATGGGACGTGTGAGAAGCAAGAAGAGAAGAAACCGGAATCAAACCTAATGATGATAGCAAAACTTACCGCGGAAGCGACTAAAGGCTATGGCCACCCATCTACCAAACCGACCCTACTTGGGCTTTCTGTGTTTGTTGTAACCTTTGTCTCACTTCTCTCAACTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

45.86

Weight (kDa)

7.81

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 62 - 353 4.4e-155 PI-PLC-like catalytic domain
PI-PLC_X PF26146 99 - 327 1.6e-21 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49740 AT3G19310
fragaria_vesca FvH4_2g05830 FvH4_2g05830 FvH4_2g05830 FvH4_2g05830
malus_domestica MD05G1082900.v1.1
prunus_persica Prupe.8G127500_v2.0.a1
pyrus_communis pycom05g07800
rosa_chinensis RchiOBHm_Chr6g0257791
rosa_laevigata RLG00000014724
rosa_multiflora Rmu_co8372415.1_g000001
rosa_roxburghii Rroxscaffold_7G00208950
rosa_rugosa Rorug05G0568000
rosa_samantha Rh6AG085000 Rh6BG079400 Rh6CG074400 Rh6DG071300
rosa_wichuraiana Rw0G011950 Rw6G007630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 521
AccII CGCG 2 cut(s) 452, 1142
AccIII TCCGGA 2 cut(s) 572, 847
AciI CCGC 7 cut(s) 438, 450, 452, 1032, 1050, 1140, 1142
AclI AACGTT 1 cut(s) 937
AclWI GGATC 1 cut(s) 877
AcoI YGGCCR 1 cut(s) 1162
AfaI GTAC 3 cut(s) 233, 377, 781
AfiI CCNNNNNNNGG 3 cut(s) 451, 617, 1191
AflIII ACRYGT 1 cut(s) 1079
AgsI TTSAA 3 cut(s) 327, 430, 476
AjiI CACGTC 2 cut(s) 681, 1080
AluBI AGCT 2 cut(s) 32, 992
AluI AGCT 2 cut(s) 32, 992
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 2 cut(s) 149, 1225
AlwI GGATC 1 cut(s) 877
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 2 cut(s) 521, 928
Aor13HI TCCGGA 2 cut(s) 572, 847
AoxI GGCC 3 cut(s) 629, 941, 1162
ApeKI GCWGC 1 cut(s) 1035
AsuHPI GGTGA 1 cut(s) 7
AvaI CYCGRG 2 cut(s) 521, 928
BalI TGGCCA 1 cut(s) 1164
BanII GRGCYC 1 cut(s) 994
Bbv12I GWGCWC 1 cut(s) 994
BbvI GCAGC 1 cut(s) 1022
BccI CCATC 3 cut(s) 749, 974, 1177
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciVI GTATCC 1 cut(s) 844
BcoDI GTCTC 2 cut(s) 149, 1225
BfaI CTAG 3 cut(s) 168, 485, 833
BfmI CTRYAG 1 cut(s) 855
BfuI GTATCC 1 cut(s) 844
BisI GCNGC 3 cut(s) 1033, 1036, 1050
BlsI GCNGC 3 cut(s) 1034, 1037, 1051
BmcAI AGTACT 1 cut(s) 233
BmeT110I CYCGRG 2 cut(s) 521, 928
BmgBI CACGTC 2 cut(s) 681, 1080
BmsI GCATC 4 cut(s) 108, 161, 556, 578
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 820
BsaJI CCNNGG 4 cut(s) 204, 450, 927, 1140
BsaWI WCCGGW 5 cut(s) 572, 595, 790, 847, 1105
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 617, 1191
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 2 cut(s) 810, 951
Bse8I GATNNNNATC 1 cut(s) 820
BseAI TCCGGA 2 cut(s) 572, 847
BseDI CCNNGG 4 cut(s) 204, 450, 927, 1140
BseGI GGATG 4 cut(s) 505, 569, 768, 1012
BseJI GATNNNNATC 1 cut(s) 820
BseLI CCNNNNNNNGG 3 cut(s) 451, 617, 1191
BseMI GCAATG 2 cut(s) 810, 951
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 882, 1002
BseXI GCAGC 1 cut(s) 1022
Bsh1236I CGCG 2 cut(s) 452, 1142
BshFI GGCC 3 cut(s) 631, 943, 1164
BsiHKAI GWGCWC 1 cut(s) 994
BsiHKCI CYCGRG 2 cut(s) 521, 928
BsiSI CCGG 5 cut(s) 573, 596, 791, 848, 1106
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 3 cut(s) 451, 617, 1191
BsmAI GTCTC 2 cut(s) 149, 1225
BsmFI GGGAC 1 cut(s) 1090
BsmI GAATGC 3 cut(s) 186, 440, 612
BsnI GGCC 3 cut(s) 631, 943, 1164
BsoBI CYCGRG 2 cut(s) 521, 928
Bsp1286I GDGCHC 1 cut(s) 994
Bsp13I TCCGGA 2 cut(s) 572, 847
Bsp143I GATC 5 cut(s) 118, 815, 821, 864, 869
BspACI CCGC 7 cut(s) 438, 450, 452, 1032, 1050, 1140, 1142
BspANI GGCC 3 cut(s) 631, 943, 1164
BspEI TCCGGA 2 cut(s) 572, 847
BspFNI CGCG 2 cut(s) 452, 1142
BspMAI CTGCAG 1 cut(s) 859
BspPI GGATC 1 cut(s) 877
BspQI GCTCTTC 1 cut(s) 39
BsrDI GCAATG 2 cut(s) 810, 951
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 204, 450, 927, 1140
BssMI GATC 5 cut(s) 118, 815, 821, 864, 869
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 5 cut(s) 134, 416, 907, 917, 1019
Bst6I CTCTTC 3 cut(s) 39, 900, 1089
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 2 cut(s) 450, 1140
BstF5I GGATG 4 cut(s) 505, 569, 768, 1012
BstFNI CGCG 2 cut(s) 452, 1142
BstKTI GATC 5 cut(s) 121, 818, 824, 867, 872
BstMAI GTCTC 2 cut(s) 149, 1225
BstMBI GATC 5 cut(s) 118, 815, 821, 864, 869
BstMWI GCNNNNNNNGC 2 cut(s) 105, 998
BstNSI RCATGY 2 cut(s) 99, 1069
BstSFI CTRYAG 1 cut(s) 855
BstUI CGCG 2 cut(s) 452, 1142
BstV1I GCAGC 1 cut(s) 1022
BstX2I RGATCY 1 cut(s) 869
BstYI RGATCY 1 cut(s) 869
BsuI GTATCC 1 cut(s) 844
BsuRI GGCC 3 cut(s) 631, 943, 1164
BtgI CCRYGG 2 cut(s) 450, 1140
BtgZI GCGATG 1 cut(s) 993
BtrI CACGTC 2 cut(s) 681, 1080
BtsCI GGATG 4 cut(s) 505, 569, 768, 1012
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 3 cut(s) 130, 285, 1008
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 287
Cfr42I CCGCGG 2 cut(s) 453, 1143
CseI GACGC 1 cut(s) 690
Csp6I GTAC 3 cut(s) 232, 376, 780
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
CviAII CATG 7 cut(s) 45, 96, 237, 589, 733, 1022, 1066
CviQI GTAC 3 cut(s) 232, 376, 780
DdeI CTNAG 1 cut(s) 62
DpnI GATC 5 cut(s) 120, 817, 823, 866, 871
DpnII GATC 5 cut(s) 118, 815, 821, 864, 869
DraI TTTAAA 1 cut(s) 465
EaeI YGGCCR 1 cut(s) 1162
Eam1104I CTCTTC 3 cut(s) 39, 900, 1089
EarI CTCTTC 3 cut(s) 39, 900, 1089
Ecl136II GAGCTC 1 cut(s) 992
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 994
Eco53kI GAGCTC 1 cut(s) 992
Eco88I CYCGRG 2 cut(s) 521, 928
EcoICRI GAGCTC 1 cut(s) 992
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 2 cut(s) 101, 571
EcoT38I GRGCYC 1 cut(s) 994
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 7 cut(s) 48, 99, 240, 592, 736, 1025, 1069
FaqI GGGAC 1 cut(s) 1090
FatI CATG 7 cut(s) 44, 95, 236, 588, 732, 1021, 1065
FauI CCCGC 1 cut(s) 457
FauNDI CATATG 2 cut(s) 73, 1072
Fnu4HI GCNGC 3 cut(s) 1033, 1036, 1050
FokI GGATG 4 cut(s) 512, 556, 775, 1019
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 3 cut(s) 1033, 1036, 1050
FspBI CTAG 3 cut(s) 168, 485, 833
GluI GCNGC 3 cut(s) 1033, 1036, 1050
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 3 cut(s) 631, 943, 1164
HapII CCGG 5 cut(s) 573, 596, 791, 848, 1106
HgaI GACGC 1 cut(s) 690
Hin1II CATG 7 cut(s) 48, 99, 240, 592, 736, 1025, 1069
HincII GTYRAC 2 cut(s) 243, 457
HindII GTYRAC 2 cut(s) 243, 457
HinfI GANTC 7 cut(s) 12, 137, 298, 323, 742, 794, 1109
HpaI GTTAAC 2 cut(s) 243, 457
HpaII CCGG 5 cut(s) 573, 596, 791, 848, 1106
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 3 cut(s) 243, 457, 780
Hpy188I TCNGA 5 cut(s) 9, 164, 657, 706, 869
Hpy8I GTNNAC 3 cut(s) 243, 457, 780
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 5 cut(s) 28, 78, 80, 318, 760
HpyCH4III ACNGT 5 cut(s) 134, 416, 907, 917, 1019
HpyCH4IV ACGT 3 cut(s) 680, 937, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 998
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 3 cut(s) 680, 937, 1079
Hsp92II CATG 7 cut(s) 48, 99, 240, 592, 736, 1025, 1069
Kpn2I TCCGGA 2 cut(s) 572, 847
KspAI GTTAAC 2 cut(s) 243, 457
KspI CCGCGG 2 cut(s) 453, 1143
Kzo9I GATC 5 cut(s) 118, 815, 821, 864, 869
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 4 cut(s) 179, 895, 989, 997
Lsp1109I GCAGC 1 cut(s) 1022
LweI GCATC 4 cut(s) 108, 161, 556, 578
MaeI CTAG 3 cut(s) 168, 485, 833
MaeII ACGT 3 cut(s) 680, 937, 1079
MaeIII GTNAC 2 cut(s) 508, 1210
MalI GATC 5 cut(s) 120, 817, 823, 866, 871
MboI GATC 5 cut(s) 118, 815, 821, 864, 869
MboII GAAGA 6 cut(s) 26, 635, 887, 1052, 1106, 1111
MflI RGATCY 1 cut(s) 869
MhlI GDGCHC 1 cut(s) 994
MlsI TGGCCA 1 cut(s) 1164
MluCI AATT 7 cut(s) 54, 112, 253, 421, 430, 711, 838
MluNI TGGCCA 1 cut(s) 1164
MmeI TCCRAC 4 cut(s) 187, 336, 469, 684
Mox20I TGGCCA 1 cut(s) 1164
Mph1103I ATGCAT 2 cut(s) 101, 571
MroI TCCGGA 2 cut(s) 572, 847
MscI TGGCCA 1 cut(s) 1164
MseI TTAA 6 cut(s) 192, 242, 345, 456, 464, 551
Msp20I TGGCCA 1 cut(s) 1164
MspA1I CMGCKG 2 cut(s) 452, 1142
MspI CCGG 5 cut(s) 573, 596, 791, 848, 1106
Mva1269I GAATGC 3 cut(s) 186, 440, 612
MvnI CGCG 2 cut(s) 452, 1142
MwoI GCNNNNNNNGC 2 cut(s) 105, 998
NdeI CATATG 2 cut(s) 73, 1072
NdeII GATC 5 cut(s) 118, 815, 821, 864, 869
NlaIII CATG 7 cut(s) 48, 99, 240, 592, 736, 1025, 1069
NsiI ATGCAT 2 cut(s) 101, 571
NspI RCATGY 2 cut(s) 99, 1069
PaeR7I CTCGAG 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 3 cut(s) 186, 440, 612
PfeI GAWTC 7 cut(s) 12, 137, 298, 323, 742, 794, 1109
PflFI GACNNNGTC 1 cut(s) 905
PkrI GCNGC 3 cut(s) 1034, 1037, 1051
Psp124BI GAGCTC 1 cut(s) 994
Psp1406I AACGTT 1 cut(s) 937
PspXI VCTCGAGB 1 cut(s) 521
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 869
PsyI GACNNNGTC 1 cut(s) 905
RsaI GTAC 3 cut(s) 233, 377, 781
RsaNI GTAC 3 cut(s) 232, 376, 780
SacI GAGCTC 1 cut(s) 994
SacII CCGCGG 2 cut(s) 453, 1143
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 6 cut(s) 192, 242, 345, 456, 464, 551
SatI GCNGC 3 cut(s) 1033, 1036, 1050
Sau3AI GATC 5 cut(s) 118, 815, 821, 864, 869
ScaI AGTACT 1 cut(s) 233
SduI GDGCHC 1 cut(s) 994
SfaNI GCATC 4 cut(s) 108, 161, 556, 578
SfcI CTRYAG 1 cut(s) 855
Sfr274I CTCGAG 1 cut(s) 521
Sfr303I CCGCGG 2 cut(s) 453, 1143
SgrBI CCGCGG 2 cut(s) 453, 1143
SlaI CTCGAG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 80, 521
SmoI CTYRAG 2 cut(s) 80, 521
Sse9I AATT 7 cut(s) 54, 112, 253, 421, 430, 711, 838
SsiI CCGC 7 cut(s) 438, 450, 452, 1032, 1050, 1140, 1142
SspMI CTAG 3 cut(s) 168, 485, 833
SstI GAGCTC 1 cut(s) 994
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 5 cut(s) 134, 416, 907, 917, 1019
TaiI ACGT 3 cut(s) 683, 940, 1082
TaqI TCGA 3 cut(s) 265, 522, 960
TasI AATT 7 cut(s) 54, 112, 253, 421, 430, 711, 838
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 1035, 1052
TfiI GAWTC 7 cut(s) 12, 137, 298, 323, 742, 794, 1109
Tru1I TTAA 6 cut(s) 192, 242, 345, 456, 464, 551
Tru9I TTAA 6 cut(s) 192, 242, 345, 456, 464, 551
TscAI CASTG 3 cut(s) 137, 292, 1008
TseI GCWGC 1 cut(s) 1035
TspDTI ATGAA 5 cut(s) 60, 246, 577, 779, 940
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 3 cut(s) 137, 292, 1008
Tth111I GACNNNGTC 1 cut(s) 905
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 2 cut(s) 99, 1069
XcmI CCANNNNNNNNNTGG 2 cut(s) 344, 413
XhoI CTCGAG 1 cut(s) 521
XspI CTAG 3 cut(s) 168, 485, 833
ZrmI AGTACT 1 cut(s) 233
Zsp2I ATGCAT 2 cut(s) 101, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.