Rh6BG079400

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011249
Physical Location & Seq
Reverse (-)
12336131 .. 12340518
4388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG079400.1

Sequence Viewer

Length: 1113 bp
ATGGATCATAGACTCTTGCTCATTGCAACTCTGTTTTCTTTGCTTTGTCTCCTTCACCTTTCTTCAGCCCGCAAGGAGGGAGAGAAATGCATCAAGAACAGTGACTGCGACTCAGGATTGCACTGCGAGACTTGCGTTGCAAACAATAATTTTTTGCCGAAATGCACTAGAATAAAGCCCATAAGTCCAATTTCTCAAGTGAAAACGCTGCCGTTTAACAGGTATTCCTGGTTAACAACCCACAATTCCTTTGCGAAACTCGGTGACAAGTCGGCGACGGGATCTGTGATTTTGGCTCCGACTAATCAGCAGGACTCCATCACCGATCAGCTTAATAATGGTGTTAGAGGCTTAATGCTGGACATGTATGACTATTTAGGTGACATTTGGTTATGTCACTCGTACGGTGGCAACTGCTACAACTACACAGCTTTTCAACCTGCCATTAGAGAACTGAAAGAAATTACAGCATTTCTTGAAGCAAACCCGTCTGAGATTGTGACAATCATAATTGAAGACTACGTTACATCACCAAAGGGCTTGACCAAAGTGTTTGATGCTGCTGGCTTGACAAAATTCTGGTTCCCAGTTTCAAGAATGCCCAAAAAGGGTGGAGATTGGCCAACAGTTGCTGATATGATCCAGAAAAATCAGCGTTTGCTAGTCTTCACTTCTAAGCAAAGAAAAGAGGCTGATGAAGGCATTGCCTACCAGTGGAGTTACATGGTGGAAAACCAATATGGAAATGGTGGCATGAAAGCTGGATCATGTCCAAACCGTGCGGAATCATCAGCCATGAACACAACAACGAGATCATTAGTCCTAGTGAACTATTTCCGAGATGTCCCAACCCTCCCTCAATCTTGCAAAGATAATTCAGATTCATTGCTTGACATGGTTAATACCTGTTACAATGTGGCTGCTAAAAGATGGCCTAACTTCATTGCCGTTGATTTTTACAAGAGAAGTGATGGTGGCGGCGCTCCTAAAGCTGTAGATGTGGTAAATGGTCATTTAGTTTGCGGGTGTCCAAGCATAGCCAACTGCAGGGTGAGTACTAAATATCCCCAACGTTATTTATTTCCTGTTGTTAGATCAGCAAGACCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

41.24

Weight (kDa)

8.75

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 59 - 350 3.4e-163 PI-PLC-like catalytic domain
PI-PLC_X PF26146 98 - 324 2.1e-25 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49740 AT3G19310
fragaria_vesca FvH4_2g05830 FvH4_2g05830 FvH4_2g05830 FvH4_2g05830
malus_domestica MD05G1082900.v1.1
prunus_persica Prupe.8G127500_v2.0.a1
pyrus_communis pycom05g07800
rosa_chinensis RchiOBHm_Chr6g0257791
rosa_laevigata RLG00000014724
rosa_multiflora Rmu_co8372415.1_g000001
rosa_roxburghii Rroxscaffold_7G00208950
rosa_rugosa Rorug05G0568000
rosa_samantha Rh6AG085000 Rh6BG079400 Rh6CG074400 Rh6DG071300
rosa_wichuraiana Rw0G011950 Rw6G007630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 448
AciI CCGC 4 cut(s) 70, 782, 978, 1023
AclI AACGTT 1 cut(s) 1072
AclWI GGATC 4 cut(s) 12, 289, 634, 772
AcoI YGGCCR 1 cut(s) 620
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 404, 1057
AfiI CCNNNNNNNGG 4 cut(s) 76, 608, 714, 1047
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 4 cut(s) 437, 479, 515, 594
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 4 cut(s) 331, 431, 761, 992
AluI AGCT 4 cut(s) 331, 431, 761, 992
Alw26I GTCTC 2 cut(s) 53, 122
AlwI GGATC 4 cut(s) 12, 289, 634, 772
AlwNI CAGNNNCTG 2 cut(s) 105, 632
AoxI GGCC 2 cut(s) 620, 932
ApeKI GCWGC 3 cut(s) 208, 560, 920
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 833
AspLEI GCGC 1 cut(s) 983
AsuHPI GGTGA 6 cut(s) 47, 275, 313, 392, 522, 1063
BalI TGGCCA 1 cut(s) 622
BbsI GAAGAC 2 cut(s) 522, 658
BbvI GCAGC 3 cut(s) 195, 547, 907
BccI CCATC 3 cut(s) 326, 924, 965
BceAI ACGGC 2 cut(s) 196, 932
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 53, 122
BfaI CTAG 3 cut(s) 168, 662, 824
BfmI CTRYAG 2 cut(s) 993, 1045
BfoI RGCGCY 1 cut(s) 984
BfuAI ACCTGC 1 cut(s) 448
BisI GCNGC 4 cut(s) 209, 561, 921, 979
BlsI GCNGC 4 cut(s) 210, 562, 922, 980
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 297, 584
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 2 cut(s) 99, 547
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 2 cut(s) 522, 658
BpuEI CTTGAG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 608, 714, 1047
Bse1I ACTGG 2 cut(s) 587, 712
Bse3DI GCAATG 4 cut(s) 21, 702, 884, 942
BseBI CCWGG 1 cut(s) 229
BseLI CCNNNNNNNGG 4 cut(s) 76, 608, 714, 1047
BseMI GCAATG 4 cut(s) 21, 702, 884, 942
BseMII CTCAG 2 cut(s) 126, 483
BseNI ACTGG 2 cut(s) 587, 712
BseXI GCAGC 3 cut(s) 195, 547, 907
BshFI GGCC 2 cut(s) 622, 934
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 4 cut(s) 76, 608, 714, 1047
BsmAI GTCTC 2 cut(s) 53, 122
BsmFI GGGAC 1 cut(s) 830
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 2 cut(s) 622, 934
Bsp143I GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
BspACI CCGC 4 cut(s) 70, 782, 978, 1023
BspANI GGCC 2 cut(s) 622, 934
BspCNI CTCAG 2 cut(s) 125, 484
BspLI GGNNCC 2 cut(s) 297, 584
BspMAI CTGCAG 1 cut(s) 1049
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 4 cut(s) 12, 289, 634, 772
BsrDI GCAATG 4 cut(s) 21, 702, 884, 942
BsrI ACTGG 2 cut(s) 587, 712
BssMI GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 4 cut(s) 101, 407, 628, 779
BstC8I GCNNGC 2 cut(s) 70, 565
BstDEI CTNAG 3 cut(s) 112, 492, 675
BstH2I RGCGCY 1 cut(s) 984
BstHHI GCGC 1 cut(s) 983
BstKTI GATC 7 cut(s) 7, 284, 328, 642, 767, 815, 1097
BstMAI GTCTC 2 cut(s) 53, 122
BstMBI GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
BstMWI GCNNNNNNNGC 2 cut(s) 132, 989
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 2 cut(s) 993, 1045
BstV1I GCAGC 3 cut(s) 195, 547, 907
BstV2I GAAGAC 2 cut(s) 522, 658
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 2 cut(s) 622, 934
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 3 cut(s) 106, 121, 719
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 70, 565
CaiI CAGNNNCTG 2 cut(s) 105, 632
CfoI GCGC 1 cut(s) 983
Csp6I GTAC 2 cut(s) 403, 1056
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 6 cut(s) 364, 724, 754, 768, 796, 895
CviQI GTAC 2 cut(s) 403, 1056
DdeI CTNAG 3 cut(s) 112, 492, 675
DpnI GATC 7 cut(s) 6, 283, 327, 641, 766, 814, 1096
DpnII GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
EaeI YGGCCR 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 227
EcoT22I ATGCAT 1 cut(s) 92
FaeI CATG 6 cut(s) 367, 727, 757, 771, 799, 898
FaqI GGGAC 1 cut(s) 830
FatI CATG 6 cut(s) 363, 723, 753, 767, 795, 894
FauI CCCGC 2 cut(s) 77, 1016
Fnu4HI GCNGC 4 cut(s) 209, 561, 921, 979
Fsp4HI GCNGC 4 cut(s) 209, 561, 921, 979
FspBI CTAG 3 cut(s) 168, 662, 824
GlaI GCGC 1 cut(s) 982
GluI GCNGC 4 cut(s) 209, 561, 921, 979
HaeII RGCGCY 1 cut(s) 984
HaeIII GGCC 2 cut(s) 622, 934
HhaI GCGC 1 cut(s) 983
Hin1II CATG 6 cut(s) 367, 727, 757, 771, 799, 898
Hin6I GCGC 1 cut(s) 981
HinP1I GCGC 1 cut(s) 981
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 5 cut(s) 12, 110, 314, 785, 881
HpaI GTTAAC 1 cut(s) 234
HphI GGTGA 6 cut(s) 47, 275, 313, 392, 522, 1063
Hpy166II GTNNAC 2 cut(s) 234, 829
Hpy188I TCNGA 5 cut(s) 300, 493, 839, 880, 1112
Hpy188III TCNNGA 5 cut(s) 94, 114, 476, 594, 643
Hpy8I GTNNAC 2 cut(s) 234, 829
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 62, 692
HpyCH4III ACNGT 4 cut(s) 101, 407, 628, 779
HpyCH4IV ACGT 2 cut(s) 522, 1072
HpyCH4V TGCA 7 cut(s) 26, 90, 121, 140, 165, 867, 1047
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 989
HpyF3I CTNAG 3 cut(s) 112, 492, 675
HpySE526I ACGT 2 cut(s) 522, 1072
Hsp92II CATG 6 cut(s) 367, 727, 757, 771, 799, 898
HspAI GCGC 1 cut(s) 981
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
LmnI GCTCC 2 cut(s) 301, 988
Lsp1109I GCAGC 3 cut(s) 195, 547, 907
LweI GCATC 2 cut(s) 99, 547
MaeI CTAG 3 cut(s) 168, 662, 824
MaeII ACGT 2 cut(s) 522, 1072
MaeIII GTNAC 8 cut(s) 101, 263, 380, 395, 499, 523, 719, 908
MalI GATC 7 cut(s) 6, 283, 327, 641, 766, 814, 1096
MboI GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
MboII GAAGA 3 cut(s) 54, 527, 658
MflI RGATCY 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 622
MluCI AATT 7 cut(s) 148, 189, 244, 462, 510, 575, 874
MluNI TGGCCA 1 cut(s) 622
MlyI GAGTC 3 cut(s) 6, 104, 308
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 5 cut(s) 70, 341, 682, 863, 867
Mox20I TGGCCA 1 cut(s) 622
Mph1103I ATGCAT 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 833
MscI TGGCCA 1 cut(s) 622
MseI TTAA 5 cut(s) 216, 233, 333, 353, 900
Msp20I TGGCCA 1 cut(s) 622
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 132, 989
NdeII GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
NlaIII CATG 6 cut(s) 367, 727, 757, 771, 799, 898
NlaIV GGNNCC 2 cut(s) 297, 584
NmuCI GTSAC 5 cut(s) 101, 263, 380, 395, 499
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 367
PciI ACATGT 1 cut(s) 363
PctI GAATGC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 2 cut(s) 785, 881
Pfl23II CGTACG 1 cut(s) 402
PkrI GCNGC 4 cut(s) 210, 562, 922, 980
PleI GAGTC 3 cut(s) 6, 104, 308
PpsI GAGTC 3 cut(s) 6, 104, 308
PscI ACATGT 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 1072
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 2 cut(s) 297, 584
PstI CTGCAG 1 cut(s) 1049
PstNI CAGNNNCTG 2 cut(s) 105, 632
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 2 cut(s) 404, 1057
RsaNI GTAC 2 cut(s) 403, 1056
SaqAI TTAA 5 cut(s) 216, 233, 333, 353, 900
SatI GCNGC 4 cut(s) 209, 561, 921, 979
Sau3AI GATC 7 cut(s) 4, 281, 325, 639, 764, 812, 1094
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 3 cut(s) 6, 104, 308
ScrFI CCNGG 1 cut(s) 229
SfaNI GCATC 2 cut(s) 99, 547
SfcI CTRYAG 2 cut(s) 993, 1045
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 7 cut(s) 148, 189, 244, 462, 510, 575, 874
SsiI CCGC 4 cut(s) 70, 782, 978, 1023
SspMI CTAG 3 cut(s) 168, 662, 824
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 4 cut(s) 101, 407, 628, 779
TaiI ACGT 2 cut(s) 525, 1075
TasI AATT 7 cut(s) 148, 189, 244, 462, 510, 575, 874
TatI WGTACW 1 cut(s) 1055
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 2 cut(s) 785, 881
Tru1I TTAA 5 cut(s) 216, 233, 333, 353, 900
Tru9I TTAA 5 cut(s) 216, 233, 333, 353, 900
TscAI CASTG 3 cut(s) 106, 128, 719
TseFI GTSAC 5 cut(s) 101, 263, 380, 395, 499
TseI GCWGC 3 cut(s) 208, 560, 920
Tsp45I GTSAC 5 cut(s) 101, 263, 380, 395, 499
TspDTI ATGAA 5 cut(s) 711, 770, 812, 873, 931
TspRI CASTG 3 cut(s) 106, 128, 719
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 3 cut(s) 168, 662, 824
ZrmI AGTACT 1 cut(s) 1057
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.