AT1G49950
MYB Family

Telomere repeat-binding factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010767
Physical Location & Seq
Reverse (-)
18494029 .. 18497318
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49950.1

Sequence Viewer

Length: 903 bp
ATGGGTGCTCCTAAGCAGAAATGGACTCAAGAAGAAGAGTCAGCTTTAAAGTCTGGAGTTATAAAGCATGGACCTGGTAAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGGAGTCTTGTACCTGCGTTCCAATGTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCAAATGGCTGGGGATCGCGCGAAAAGTCTAGGTTAGCTGTTAAAAGGACGTTCTCCCTTCCTAAACAGGAAGAGAACTCACTAGCCCTAACCAATTCTTTGCAAAGTGATGAAGAAAATGTGGATGCGACCTCTGGACTCCAAGTTTCTTCTAATCCTCCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAATGGAAGCAATAGCTACCCTGAAAGAACCTGGTGGCTGTAACAAAACAACAATTGGTGCCTACATTGAGGATCAATATCATGCTCCACCAGACTTCAAACGCTTGTTGTCTACCAAGCTAAAGTACTTGACATCTTGCGGGAAACTTGTGAAGGTTAAACGTAAGTACAGAATTCCAAACTCCACTCCCTTGTCTTCCCACAGGAGAAAAGGTCTGGGGGTGTTTGGAGGAAAACAGAGGACTTCTTCTTTGCCTTCACCTAAAACAGACATAGATGAAGTGAATTTTCAGACAAGGTCACAGATTGATACAGAGATAGCCAGAATGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGCAGCACAGGCAGTAGCAGAGGCAGAAGCTGCCATGGCAGAGGCTGAGGAAGCTGCAAAGGAAGCGGAGGCAGCAGAAGCCGAAGCAGAAGCAGCTCAAGCTTTCGCTGAGGAAGCTTCAAAGACATTGAAAGGAAGAAACATCTGCAAAATGATGATCCGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

300

Amino Acids

33.02

Weight (kDa)

9.34

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 56 1.8e-08 Myb-like DNA-binding domain
Linker_histone PF00538 122 - 178 2.4e-08 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 62, 374
Acc36I ACCTGC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 485
AccII CGCG 2 cut(s) 196, 198
AciI CCGC 4 cut(s) 114, 513, 725, 800
AclWI GGATC 4 cut(s) 95, 199, 453, 886
AcsI RAATTY 3 cut(s) 107, 546, 658
AfaI GTAC 4 cut(s) 125, 500, 542, 717
AfiI CCNNNNNNNGG 1 cut(s) 376
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 472, 855, 865
AjnI CCWGG 2 cut(s) 73, 403
AluBI AGCT 9 cut(s) 44, 215, 389, 493, 764, 788, 830, 836, 851
AluI AGCT 9 cut(s) 44, 215, 389, 493, 764, 788, 830, 836, 851
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 4 cut(s) 95, 199, 453, 886
AlwNI CAGNNNCTG 2 cut(s) 764, 779
ApeKI GCWGC 6 cut(s) 728, 737, 764, 788, 806, 827
ApoI RAATTY 3 cut(s) 107, 546, 658
ArsI GACNNNNNNTTYG 2 cut(s) 607, 639
AspLEI GCGC 2 cut(s) 87, 198
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 624
AvaII GGWCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 2 cut(s) 780, 843
BbvI GCAGC 6 cut(s) 740, 749, 751, 775, 818, 839
BciT130I CCWGG 2 cut(s) 75, 405
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 2 cut(s) 207, 260
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 7 cut(s) 726, 729, 738, 765, 789, 807, 828
BlsI GCNGC 7 cut(s) 727, 730, 739, 766, 790, 808, 829
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 2 cut(s) 75, 405
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 2 cut(s) 75, 405
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 561
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 3 cut(s) 12, 780, 843
BpuEI CTTGAG 2 cut(s) 12, 816
BsaBI GATNNNNATC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 341, 768
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 2 cut(s) 75, 405
BseDI CCNNGG 2 cut(s) 341, 768
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 2 cut(s) 771, 834
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 6 cut(s) 740, 749, 751, 775, 818, 839
BseYI CCCAGC 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 196, 198
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 5 cut(s) 100, 142, 191, 445, 891
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 4 cut(s) 114, 513, 725, 800
BspCNI CTCAG 2 cut(s) 772, 835
BspFNI CGCG 2 cut(s) 196, 198
BspLI GGNNCC 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 4 cut(s) 95, 199, 453, 886
BspT107I GGYRCC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 341, 768
BssMI GATC 5 cut(s) 100, 142, 191, 445, 891
BssT1I CCWWGG 2 cut(s) 341, 768
Bst2UI CCWGG 2 cut(s) 75, 405
Bst6I CTCTTC 3 cut(s) 30, 243, 698
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 2 cut(s) 734, 764
BstDEI CTNAG 3 cut(s) 12, 780, 843
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 196, 198
BstHHI GCGC 2 cut(s) 87, 198
BstKTI GATC 5 cut(s) 103, 145, 194, 448, 894
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 5 cut(s) 100, 142, 191, 445, 891
BstNI CCWGG 2 cut(s) 75, 405
BstSCI CCNGG 2 cut(s) 73, 403
BstUI CGCG 2 cut(s) 196, 198
BstV1I GCAGC 6 cut(s) 740, 749, 751, 775, 818, 839
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 135
CaiI CAGNNNCTG 2 cut(s) 764, 779
CfoI GCGC 2 cut(s) 87, 198
Cfr13I GGNCC 1 cut(s) 71
CsiI ACCWGGT 2 cut(s) 73, 403
Csp6I GTAC 4 cut(s) 124, 499, 541, 716
CviAII CATG 6 cut(s) 68, 166, 175, 455, 719, 769
CviQI GTAC 4 cut(s) 124, 499, 541, 716
DdeI CTNAG 3 cut(s) 12, 780, 843
DpnI GATC 5 cut(s) 102, 144, 193, 447, 893
DpnII GATC 5 cut(s) 100, 142, 191, 445, 891
DraI TTTAAA 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 30, 243, 698
EarI CTCTTC 3 cut(s) 30, 243, 698
Eco130I CCWWGG 2 cut(s) 341, 768
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 73, 403
EcoT14I CCWWGG 2 cut(s) 341, 768
ErhI CCWWGG 2 cut(s) 341, 768
FaeI CATG 6 cut(s) 71, 169, 178, 458, 722, 772
FatI CATG 6 cut(s) 67, 165, 174, 454, 718, 768
FauI CCCGC 1 cut(s) 506
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 7 cut(s) 726, 729, 738, 765, 789, 807, 828
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 7 cut(s) 726, 729, 738, 765, 789, 807, 828
FspBI CTAG 2 cut(s) 207, 260
GlaI GCGC 2 cut(s) 86, 197
GluI GCNGC 7 cut(s) 726, 729, 738, 765, 789, 807, 828
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 75
HhaI GCGC 2 cut(s) 87, 198
Hin1II CATG 6 cut(s) 71, 169, 178, 458, 722, 772
Hin6I GCGC 2 cut(s) 85, 196
HinP1I GCGC 2 cut(s) 85, 196
HindIII AAGCTT 2 cut(s) 834, 849
HinfI GANTC 4 cut(s) 25, 38, 117, 315
HphI GGTGA 1 cut(s) 624
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 1 cut(s) 666
Hpy188III TCNNGA 4 cut(s) 29, 54, 104, 312
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 3 cut(s) 245, 520, 639
HpyCH4IV ACGT 3 cut(s) 227, 535, 714
HpyCH4V TGCA 4 cut(s) 280, 737, 791, 882
HpyF3I CTNAG 3 cut(s) 12, 780, 843
HpySE526I ACGT 3 cut(s) 227, 535, 714
Hsp92II CATG 6 cut(s) 71, 169, 178, 458, 722, 772
HspAI GCGC 2 cut(s) 85, 196
Kzo9I GATC 5 cut(s) 100, 142, 191, 445, 891
LmnI GCTCC 2 cut(s) 13, 463
Lsp1109I GCAGC 6 cut(s) 740, 749, 751, 775, 818, 839
LweI GCATC 1 cut(s) 292
MabI ACCWGGT 2 cut(s) 73, 403
MaeI CTAG 2 cut(s) 207, 260
MaeII ACGT 3 cut(s) 227, 535, 714
MaeIII GTNAC 2 cut(s) 413, 672
MalI GATC 5 cut(s) 102, 144, 193, 447, 893
MboI GATC 5 cut(s) 100, 142, 191, 445, 891
MboII GAAGA 9 cut(s) 44, 47, 260, 302, 318, 561, 612, 715, 882
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 6 cut(s) 90, 107, 271, 426, 546, 658
MlyI GAGTC 4 cut(s) 19, 47, 126, 309
MmeI TCCRAC 1 cut(s) 342
MseI TTAA 4 cut(s) 47, 147, 219, 531
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 75, 405
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 2 cut(s) 75, 405
MvnI CGCG 2 cut(s) 196, 198
NcoI CCATGG 1 cut(s) 768
NdeII GATC 5 cut(s) 100, 142, 191, 445, 891
NlaIII CATG 6 cut(s) 71, 169, 178, 458, 722, 772
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 672
PflFI GACNNNGTC 1 cut(s) 670
PkrI GCNGC 7 cut(s) 727, 730, 739, 766, 790, 808, 829
PleI GAGTC 4 cut(s) 19, 46, 125, 309
PpsI GAGTC 4 cut(s) 19, 46, 125, 309
PsiI TTATAA 2 cut(s) 62, 374
Psp6I CCWGG 2 cut(s) 73, 403
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 2 cut(s) 73, 403
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 1 cut(s) 71
PstNI CAGNNNCTG 2 cut(s) 764, 779
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 670
RsaI GTAC 4 cut(s) 125, 500, 542, 717
RsaNI GTAC 4 cut(s) 124, 499, 541, 716
SaqAI TTAA 4 cut(s) 47, 147, 219, 531
SatI GCNGC 7 cut(s) 726, 729, 738, 765, 789, 807, 828
Sau3AI GATC 5 cut(s) 100, 142, 191, 445, 891
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 4 cut(s) 19, 47, 126, 309
ScrFI CCNGG 2 cut(s) 75, 405
SduI GDGCHC 1 cut(s) 10
SexAI ACCWGGT 2 cut(s) 73, 403
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 27, 146, 831
SmoI CTYRAG 3 cut(s) 27, 146, 831
Sse9I AATT 6 cut(s) 90, 107, 271, 426, 546, 658
SsiI CCGC 4 cut(s) 114, 513, 725, 800
SspMI CTAG 2 cut(s) 207, 260
StyD4I CCNGG 2 cut(s) 73, 403
StyI CCWWGG 2 cut(s) 341, 768
TaiI ACGT 3 cut(s) 230, 538, 717
TasI AATT 6 cut(s) 90, 107, 271, 426, 546, 658
TatI WGTACW 2 cut(s) 498, 540
TauI GCSGC 1 cut(s) 728
Tru1I TTAA 4 cut(s) 47, 147, 219, 531
Tru9I TTAA 4 cut(s) 47, 147, 219, 531
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 6 cut(s) 728, 737, 764, 788, 806, 827
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 4 cut(s) 303, 666, 716, 725
TspGWI ACGGA 1 cut(s) 884
Tth111I GACNNNGTC 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 3 cut(s) 107, 546, 658
XmiI GTMKAC 1 cut(s) 485
XspI CTAG 2 cut(s) 207, 260
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.