Rorug05G0538100
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010767
Physical Location & Seq
Forward (+)
72714350 .. 72714608
259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0538100.1

Sequence Viewer

Length: 165 bp
ATGACCACTATGGGTGTATATGTGCGTGATTTGCTACTTGGGCAGGTAAGGTTCTGGTTTGATTTTGGGAAGCTTCAAATTGGTGGCTCTGGAGTTGTGATTGTCTGGTGTTCTTCTTCGAAGTTCGAACTACAGGTCGGTCTTCTTGTGGGATATAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

54

Amino Acids

6.05

Weight (kDa)

9.1

Isoelectric Point (pI)

21.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 150
Acc36I ACCTGC 2 cut(s) 34, 150
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsuII TTCGAA 2 cut(s) 119, 126
BbsI GAAGAC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 131
BfuAI ACCTGC 2 cut(s) 34, 150
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 111
Bpu14I TTCGAA 2 cut(s) 119, 126
Bsp119I TTCGAA 2 cut(s) 119, 126
BspMI ACCTGC 2 cut(s) 34, 150
BspT104I TTCGAA 2 cut(s) 119, 126
BstBI TTCGAA 2 cut(s) 119, 126
BstMWI GCNNNNNNNGC 2 cut(s) 31, 40
BstSFI CTRYAG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 134
BveI ACCTGC 2 cut(s) 34, 150
CviJI RGCY 2 cut(s) 73, 87
CviKI_1 RGCY 2 cut(s) 73, 87
FaiI YATR 4 cut(s) 11, 19, 21, 156
GsuI CTGGAG 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 40
LpnPI CCDG 6 cut(s) 29, 40, 75, 91, 119, 145
MboII GAAGA 3 cut(s) 105, 108, 134
MluCI AATT 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 31, 40
NspV TTCGAA 2 cut(s) 119, 126
PaqCI CACCTGC 1 cut(s) 150
SetI ASST 5 cut(s) 48, 53, 75, 138, 164
SfcI CTRYAG 1 cut(s) 131
SfuI TTCGAA 2 cut(s) 119, 126
SgeI CNNG 8 cut(s) 38, 50, 56, 67, 102, 118, 146, 158
Sse9I AATT 1 cut(s) 78
TaqI TCGA 2 cut(s) 119, 126
TaqII GACCGA 1 cut(s) 128
TasI AATT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.