Rorug05G0537900
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010767
Physical Location & Seq
Reverse (-)
72689756 .. 72691894
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0537900.1

Sequence Viewer

Length: 384 bp
ATGGATGATATGCATTCTACTTTACTCTCTTTTACAGGTTCCAAGATGCTAGAGTTGGACTTCATCGGAAGAGTTGTAGCACCCTACAACGGCGCAGTAGCAATGTGTGTAGGAATAGGCAGCTTCTGTGACCCTCCTGAGGCACAGTGGCTTGGACACTTTTTAGAACACATGCTCTTTATGGGGAGTACAGAATTTCCTGATGAAAAGGAGTATGACAGTTACTTGTCCAAGCACAGAGGGTGTTTAAATGCATACACGGAAGTAGAGCATACTTGCTACCATTTTGAAGTGAAACGAGAGTTTCTCAAGGGTGCCTTGACAAGGATCTGTGGTGTAAAAGAATATTTTGGGATGGACATGAGATTTCGGTTGCAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

5.43

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16 PF00675 32 - 109 3.8e-19 Insulinase (Peptidase family M16)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 3 cut(s) 89, 139, 324
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 138
BanI GGYRCC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 106
BfaI CTAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 40, 316
BmsI GCATC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 291, 323
BpuEI CTTGAG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 139, 324
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 108
BseGI GGATG 2 cut(s) 10, 360
BseLI CCNNNNNNNGG 3 cut(s) 89, 139, 324
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 89, 139, 324
BsmI GAATGC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 40, 316
BspPI GGATC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 108
BssMI GATC 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 147, 221
Bst6I CTCTTC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 10, 360
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 10, 360
BtsIMutI CAGTG 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 172, 361
CviJI RGCY 2 cut(s) 123, 151
CviKI_1 RGCY 2 cut(s) 123, 151
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 322
EcoT22I ATGCAT 2 cut(s) 15, 256
FaeI CATG 2 cut(s) 175, 364
FaiI YATR 7 cut(s) 11, 173, 182, 216, 256, 273, 362
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 2 cut(s) 171, 360
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 2 cut(s) 17, 367
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 95
Hin1II CATG 2 cut(s) 175, 364
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 137, 200
HpyCH4III ACNGT 2 cut(s) 147, 221
HpyCH4V TGCA 3 cut(s) 13, 254, 376
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 175, 364
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 327
LpnPI CCDG 3 cut(s) 21, 150, 213
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 128, 221
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 1 cut(s) 81
MflI RGATCY 1 cut(s) 327
MluCI AATT 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 3 cut(s) 133, 144, 233
Mph1103I ATGCAT 2 cut(s) 15, 256
MseI TTAA 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 13
NdeII GATC 1 cut(s) 327
NlaIII CATG 2 cut(s) 175, 364
NlaIV GGNNCC 2 cut(s) 40, 316
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 2 cut(s) 15, 256
NspI RCATGY 1 cut(s) 175
PctI GAATGC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 40, 316
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 327
SetI ASST 2 cut(s) 40, 125
SfaNI GCATC 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 194
SspI AATATT 1 cut(s) 347
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 2 cut(s) 147, 221
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 52, 219
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 322
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 2 cut(s) 15, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.