MD10G1107300.v1.1
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010767
Physical Location & Seq
Forward (+)
17580738 .. 17588170
7433 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1107300.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGGTGCTCCAAAGCAGAAGTGGACGGCGGAAGAAGAATCAGCCCTTAAAGCTGGAGTTATTAAACATGGCGCAGGAAAATGGCGGACCATACTTAAAGATCCAGAATTTAGTGGCGTTCTGTATACTCGCTCAAATGTAGATCTTAAGGATAAGTGGAGAAATATGAGTGTCATGGCAAGTGGATGGGGCTCTCGAGAGAAAGCCAAGACGGCACTTAGAAGAATACCTCCGATTTCTAAACAGGATGAAAACTCTATTCCTCTCAGTACTACTGTTCAAAGCGATGATGAAATGATGGATGCTAAGCTTATTTCAGTTTCTAGTGAGACCCAGCAGATTTCTGGTCCAAGAAAATCTATTGTGAGGCTGGACAATCTTATCATGGAAGCTATAACTAGGTTGAAGGAGCCTGGTGGATCTAATAAAACGACTATTGCTGCATATATAGAGGACGAATATTGGGCTCCTCAAGATTTCAAGAGGCTATTATCTGAGAAATTAAAATACTTGACAGCAAGCCGTAAATTGATTAAGGTAAAACGCAGATACAGGATTGCACCTACTCCAGCGTTATCTGAAAAAAGAAGAAATACCTCAACGTATCCTTTTGAGGGAAGACAGATGGCGTCTGCTTTTGAGGGAAGACGCATGGCATCTCCTTTTGAGGGAAGACCAATGGTGTCTCCTTTTGAGGGAAGGTATATGGTGTCTCCAAAATTTGACAATGATGAGGCTACCATCCTGATGAAAACCCAAATTGATTTGGAGCTTGCGAAGATGAGGACTATGACCCCCAAGGAAGCTACTTTAGCTGCTGCTCAAGCAGTGAAAGAGGCAGAAGCTGCCATTGCTGAAGCCGAAGAGGCAGCCAGGGAAGCTGAGGCTGCTGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGAAGCAGCAATGAAGACACTAAAAGGAAGAAATGCTGCGAAGATGATGAATCGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

328

Amino Acids

36.46

Weight (kDa)

9.5

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 56 1.2e-08 Myb-like DNA-binding domain
Linker_histone PF00538 125 - 181 9e-09 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 29, 85
AclWI GGATC 2 cut(s) 95, 427
AcsI RAATTY 2 cut(s) 107, 719
AcuI CTGAAG 2 cut(s) 876, 912
AcyI GRCGYC 1 cut(s) 629
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 3 cut(s) 614, 668, 695
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 281, 406, 481
AjnI CCWGG 2 cut(s) 412, 872
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 3 cut(s) 323, 690, 717
AlwI GGATC 2 cut(s) 95, 427
AlwNI CAGNNNCTG 1 cut(s) 845
Ama87I CYCGRG 1 cut(s) 195
ApeKI GCWGC 9 cut(s) 440, 815, 818, 845, 869, 887, 908, 929, 959
ApoI RAATTY 2 cut(s) 107, 719
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 87, 347
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 2 cut(s) 87, 347
BanII GRGCYC 2 cut(s) 194, 469
BbsI GAAGAC 4 cut(s) 625, 652, 679, 944
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 9 cut(s) 427, 802, 805, 832, 874, 881, 920, 941, 946
BccI CCATC 4 cut(s) 180, 292, 619, 749
BceAI ACGGC 3 cut(s) 42, 228, 507
BciT130I CCWGG 2 cut(s) 414, 874
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 323, 690, 717
BfaI CTAG 2 cut(s) 324, 399
BfrI CTTAAG 1 cut(s) 146
BfuI GTATCC 1 cut(s) 615
BglI GCCNNNNNGGC 2 cut(s) 212, 866
BglII AGATCT 1 cut(s) 142
BisI GCNGC 9 cut(s) 441, 816, 819, 846, 870, 888, 909, 930, 960
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 9 cut(s) 442, 817, 820, 847, 871, 889, 910, 931, 961
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 414, 874
Bme18I GGWCC 2 cut(s) 87, 347
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 87, 347
BmiI GGNNCC 2 cut(s) 411, 468
BmrFI CCNGG 2 cut(s) 414, 874
BmsI GCATC 3 cut(s) 292, 665, 889
BpiI GAAGAC 4 cut(s) 625, 652, 679, 944
BpmI CTGGAG 2 cut(s) 75, 552
Bpu10I CCTNAGC 1 cut(s) 882
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 456, 807
BsaHI GRCGYC 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 798, 873
Bsc4I CCNNNNNNNGG 3 cut(s) 614, 668, 695
Bse3DI GCAATG 2 cut(s) 849, 939
BseBI CCWGG 2 cut(s) 414, 874
BseDI CCNNGG 2 cut(s) 798, 873
BseGI GGATG 4 cut(s) 191, 253, 307, 741
BseLI CCNNNNNNNGG 3 cut(s) 614, 668, 695
BseMI GCAATG 2 cut(s) 849, 939
BseMII CTCAG 3 cut(s) 280, 486, 873
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 9 cut(s) 427, 802, 805, 832, 874, 881, 920, 941, 946
BseYI CCCAGC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 963
BslI CCNNNNNNNGG 3 cut(s) 614, 668, 695
BsmAI GTCTC 3 cut(s) 323, 690, 717
BsmFI GGGAC 1 cut(s) 963
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 3 cut(s) 10, 194, 469
Bsp143I GATC 3 cut(s) 100, 142, 419
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 29, 85
BspCNI CTCAG 3 cut(s) 279, 487, 874
BspLI GGNNCC 2 cut(s) 411, 468
BspPI GGATC 2 cut(s) 95, 427
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 849, 939
BssECI CCNNGG 2 cut(s) 798, 873
BssMI GATC 3 cut(s) 100, 142, 419
BssNAI GTATAC 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 798
Bst1107I GTATAC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 414, 874
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 1 cut(s) 629
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 520, 774
BstDEI CTNAG 5 cut(s) 218, 266, 306, 495, 882
BstF5I GGATG 4 cut(s) 191, 253, 307, 741
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 3 cut(s) 103, 145, 422
BstMAI GTCTC 3 cut(s) 323, 690, 717
BstMBI GATC 3 cut(s) 100, 142, 419
BstNI CCWGG 2 cut(s) 414, 874
BstSCI CCNGG 2 cut(s) 412, 872
BstV1I GCAGC 9 cut(s) 427, 802, 805, 832, 874, 881, 920, 941, 946
BstV2I GAAGAC 4 cut(s) 625, 652, 679, 944
BstX2I RGATCY 3 cut(s) 100, 142, 419
BstYI RGATCY 3 cut(s) 100, 142, 419
BstZ17I GTATAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 615
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 4 cut(s) 191, 253, 307, 741
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 2 cut(s) 520, 774
CaiI CAGNNNCTG 1 cut(s) 845
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 87, 347
CseI GACGC 2 cut(s) 618, 657
Csp6I GTAC 1 cut(s) 270
CviAII CATG 4 cut(s) 68, 175, 385, 652
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 5 cut(s) 218, 266, 306, 495, 882
DpnI GATC 3 cut(s) 102, 144, 421
DpnII GATC 3 cut(s) 100, 142, 419
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
EciI GGCGGA 2 cut(s) 44, 100
Eco130I CCWWGG 1 cut(s) 798
Eco24I GRGCYC 2 cut(s) 194, 469
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 87, 347
Eco57I CTGAAG 2 cut(s) 876, 912
Eco88I CYCGRG 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 412, 872
EcoT14I CCWWGG 1 cut(s) 798
EcoT38I GRGCYC 2 cut(s) 194, 469
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 4 cut(s) 71, 178, 388, 655
FaqI GGGAC 1 cut(s) 963
FatI CATG 4 cut(s) 67, 174, 384, 651
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 9 cut(s) 441, 816, 819, 846, 870, 888, 909, 930, 960
FokI GGATG 4 cut(s) 198, 260, 314, 728
FriOI GRGCYC 2 cut(s) 194, 469
Fsp4HI GCNGC 9 cut(s) 441, 816, 819, 846, 870, 888, 909, 930, 960
FspBI CTAG 2 cut(s) 324, 399
GlaI GCGC 1 cut(s) 73
GluI GCNGC 9 cut(s) 441, 816, 819, 846, 870, 888, 909, 930, 960
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 2 cut(s) 75, 552
HgaI GACGC 2 cut(s) 618, 657
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 4 cut(s) 71, 178, 388, 655
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HindIII AAGCTT 2 cut(s) 308, 915
HinfI GANTC 2 cut(s) 38, 973
Hpy166II GTNNAC 2 cut(s) 24, 126
Hpy188I TCNGA 3 cut(s) 234, 496, 580
Hpy188III TCNNGA 6 cut(s) 104, 195, 197, 473, 481, 745
Hpy8I GTNNAC 2 cut(s) 24, 126
HpyAV CCTTC 2 cut(s) 400, 693
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 4 cut(s) 443, 560, 902, 923
HpyF3I CTNAG 5 cut(s) 218, 266, 306, 495, 882
HpySE526I ACGT 1 cut(s) 602
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 4 cut(s) 71, 178, 388, 655
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 3 cut(s) 100, 142, 419
LmnI GCTCC 4 cut(s) 13, 409, 472, 769
Lsp1109I GCAGC 9 cut(s) 427, 802, 805, 832, 874, 881, 920, 941, 946
LweI GCATC 3 cut(s) 292, 665, 889
MaeI CTAG 2 cut(s) 324, 399
MaeII ACGT 1 cut(s) 602
MalI GATC 3 cut(s) 102, 144, 421
MboI GATC 3 cut(s) 100, 142, 419
MflI RGATCY 3 cut(s) 100, 142, 419
MhlI GDGCHC 3 cut(s) 10, 194, 469
MluCI AATT 5 cut(s) 107, 500, 527, 719, 759
MseI TTAA 6 cut(s) 48, 63, 96, 147, 503, 534
MslI CAYNNNNRTG 1 cut(s) 746
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 414, 874
MvaI CCWGG 2 cut(s) 414, 874
NdeII GATC 3 cut(s) 100, 142, 419
NlaIII CATG 4 cut(s) 71, 178, 388, 655
NlaIV GGNNCC 2 cut(s) 411, 468
PaeR7I CTCGAG 1 cut(s) 195
PfeI GAWTC 2 cut(s) 38, 973
PkrI GCNGC 9 cut(s) 442, 817, 820, 847, 871, 889, 910, 931, 961
Psp6I CCWGG 2 cut(s) 412, 872
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 2 cut(s) 412, 872
PspN4I GGNNCC 2 cut(s) 411, 468
PspPI GGNCC 2 cut(s) 87, 347
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 3 cut(s) 100, 142, 419
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 6 cut(s) 48, 63, 96, 147, 503, 534
SatI GCNGC 9 cut(s) 441, 816, 819, 846, 870, 888, 909, 930, 960
Sau3AI GATC 3 cut(s) 100, 142, 419
Sau96I GGNCC 2 cut(s) 87, 347
ScaI AGTACT 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 414, 874
SduI GDGCHC 3 cut(s) 10, 194, 469
SfaNI GCATC 3 cut(s) 292, 665, 889
Sfr274I CTCGAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 87, 347
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 4 cut(s) 146, 195, 471, 822
SmoI CTYRAG 4 cut(s) 146, 195, 471, 822
Sse9I AATT 5 cut(s) 107, 500, 527, 719, 759
SsiI CCGC 2 cut(s) 29, 85
SspI AATATT 1 cut(s) 461
SspMI CTAG 2 cut(s) 324, 399
StyD4I CCNGG 2 cut(s) 412, 872
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 605
TaqI TCGA 1 cut(s) 196
TasI AATT 5 cut(s) 107, 500, 527, 719, 759
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 2 cut(s) 38, 973
Tru1I TTAA 6 cut(s) 48, 63, 96, 147, 503, 534
Tru9I TTAA 6 cut(s) 48, 63, 96, 147, 503, 534
TscAI CASTG 1 cut(s) 834
TseI GCWGC 9 cut(s) 440, 815, 818, 845, 869, 887, 908, 929, 959
TspDTI ATGAA 4 cut(s) 264, 306, 764, 950
TspRI CASTG 1 cut(s) 834
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 87, 347
XapI RAATTY 2 cut(s) 107, 719
XcmI CCANNNNNNNNNTGG 2 cut(s) 18, 341
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 2 cut(s) 324, 399
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.