FvH4_2g03730
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010767
Physical Location & Seq
Forward (+)
2968813 .. 2973291
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03730.t1

Sequence Viewer

Length: 897 bp
ATGGGTGCTCCTAAGCAGAAATGGAACGCAGAAGAAGAAGCAGCCCTTAAAGCCGGAGTGCTTAAACATGGGGCTGGCAAATGGCGAACCATACTAAAGGATCCAGAGTTTGCTCGCATCTTGTATCTTCGCTCAAATGTAGATCTTAAGGATAAGTGGAGGAATTTGAGTGTCATGGTAAATGGATGGGGCTCCCGAGATAAGTATAGGACTGTAACTAGAAGAATGCCTCAGATCCCCAAGGAAGATAGTTCTATGGCTCTCAGTGCTGGTCAAAGCGATGAAGAAGTTATGGATGCTAAGCCTATGGCAGCATCCAGTGACTCACAGCAGGTTTCTGCTCCGAAAAGATCCATTGTGAGGCTGGACGATCTTATTATGGAGGCTATAAGTAGCTTGAAGGATCCAGGTGGTTCTAATAAGACTGCTATTGCTGCATATATAGAGGAACAATATTGGGCTCCACCAGATTTCAAGAGGCTGTTGTCGGCAAAATTGAAATTCTTGACAGCAAGTGGTAAACTGATTAAGGTAAAAAGAAGGTACAGGATTGCCCCTACTCCAACATTTTCGGATAAGAAAAGAAATTCCTCTATGTTTCCTTTTGAGGGCAGGCAGAGAGTTTCCCCAAAATTTGATAGGGATGACGGTACCATGCTTATGAGAACCCAGATTGATTTAGAGCTAGCCAGGATGAGGACTATGACGTCACAAGAGGCTGCTGCAGCTGCTGCTCGAGCAGTTGCAGAGGCCGAAGCTGCCATAGCAGAAGCGGAAGAGGCAGCGAGGGAAGCAGAAGCAGCAGAAGCTGATGCTGAAGTAGCACAAGCTTTTGCAGATGCAGCAATGAAGACACTAAGAGGAAGAAATCCTGGAAAGATGGTAAAGTCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.02

Weight (kDa)

9.61

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 56 9.3e-07 Myb-like DNA-binding domain
Linker_histone PF00538 122 - 179 4.1e-10 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 706
AatII GACGTC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 650
AciI CCGC 1 cut(s) 773
AclWI GGATC 6 cut(s) 95, 108, 229, 345, 398, 411
AcsI RAATTY 4 cut(s) 163, 500, 586, 632
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 2 cut(s) 545, 652
AfiI CCNNNNNNNGG 3 cut(s) 360, 608, 696
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 400, 475, 499
AjnI CCWGG 3 cut(s) 406, 689, 871
AluBI AGCT 6 cut(s) 396, 685, 728, 758, 809, 830
AluI AGCT 6 cut(s) 396, 685, 728, 758, 809, 830
Alw21I GWGCWC 1 cut(s) 10
AlwI GGATC 6 cut(s) 95, 108, 229, 345, 398, 411
AlwNI CAGNNNCTG 2 cut(s) 731, 809
Ama87I CYCGRG 2 cut(s) 195, 735
AoxI GGCC 1 cut(s) 750
ApoI RAATTY 4 cut(s) 163, 500, 586, 632
Asp718I GGTACC 1 cut(s) 650
AsuNHI GCTAGC 1 cut(s) 685
AvaI CYCGRG 2 cut(s) 195, 735
BamHI GGATCC 2 cut(s) 100, 403
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 2 cut(s) 194, 463
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 2 cut(s) 180, 874
BciT130I CCWGG 3 cut(s) 408, 691, 873
BfaI CTAG 2 cut(s) 219, 686
BfmI CTRYAG 1 cut(s) 723
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 322
BglII AGATCT 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 300
Bme1390I CCNGG 3 cut(s) 408, 691, 873
BmeT110I CYCGRG 2 cut(s) 195, 735
BmiI GGNNCC 5 cut(s) 102, 193, 405, 462, 652
BmrFI CCNGG 3 cut(s) 408, 691, 873
BmsI GCATC 5 cut(s) 126, 286, 323, 802, 829
BmtI GCTAGC 1 cut(s) 689
BpiI GAAGAC 1 cut(s) 857
Bpu10I CCTNAGC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 707
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 608, 696
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 3 cut(s) 408, 691, 873
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 5 cut(s) 191, 301, 314, 649, 699
BseLI CCNNNNNNNGG 3 cut(s) 360, 608, 696
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 245, 277
BseNI ACTGG 1 cut(s) 318
BshFI GGCC 1 cut(s) 752
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 2 cut(s) 195, 735
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 360, 608, 696
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 1 cut(s) 752
BsoBI CYCGRG 2 cut(s) 195, 735
Bsp1286I GDGCHC 3 cut(s) 10, 194, 463
Bsp143I GATC 6 cut(s) 100, 142, 234, 350, 370, 403
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 1 cut(s) 773
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 2 cut(s) 244, 276
BspLI GGNNCC 5 cut(s) 102, 193, 405, 462, 652
BspMAI CTGCAG 1 cut(s) 727
BspMI ACCTGC 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 689
BspPI GGATC 6 cut(s) 95, 108, 229, 345, 398, 411
BspT107I GGYRCC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 6 cut(s) 100, 142, 234, 350, 370, 403
BssNI GRCGYC 1 cut(s) 707
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 3 cut(s) 408, 691, 873
Bst4CI ACNGT 2 cut(s) 214, 650
Bst6I CTCTTC 1 cut(s) 771
BstACI GRCGYC 1 cut(s) 707
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 4 cut(s) 76, 115, 614, 687
BstDEI CTNAG 5 cut(s) 12, 231, 263, 300, 857
BstF5I GGATG 5 cut(s) 191, 301, 314, 649, 699
BstKTI GATC 6 cut(s) 103, 145, 237, 353, 373, 406
BstMBI GATC 6 cut(s) 100, 142, 234, 350, 370, 403
BstNI CCWGG 3 cut(s) 408, 691, 873
BstSCI CCNGG 3 cut(s) 406, 689, 871
BstSFI CTRYAG 1 cut(s) 723
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 5 cut(s) 100, 142, 234, 350, 403
BstYI RGATCY 5 cut(s) 100, 142, 234, 350, 403
BsuRI GGCC 1 cut(s) 752
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 5 cut(s) 191, 301, 314, 649, 699
BtsIMutI CAGTG 2 cut(s) 271, 325
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 4 cut(s) 76, 115, 614, 687
CaiI CAGNNNCTG 2 cut(s) 731, 809
Csp6I GTAC 2 cut(s) 544, 651
CviAII CATG 4 cut(s) 68, 175, 655, 892
CviQI GTAC 2 cut(s) 544, 651
DdeI CTNAG 5 cut(s) 12, 231, 263, 300, 857
DpnI GATC 6 cut(s) 102, 144, 236, 352, 372, 405
DpnII GATC 6 cut(s) 100, 142, 234, 350, 370, 403
DrdI GACNNNNNNGTC 1 cut(s) 706
DseDI GACNNNNNNGTC 1 cut(s) 706
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 2 cut(s) 194, 463
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 2 cut(s) 195, 735
EcoRII CCWGG 3 cut(s) 406, 689, 871
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 2 cut(s) 194, 463
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 71, 178, 658, 895
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 4 cut(s) 67, 174, 654, 891
FokI GGATG 5 cut(s) 198, 301, 308, 656, 706
FriOI GRGCYC 2 cut(s) 194, 463
FspBI CTAG 2 cut(s) 219, 686
HaeIII GGCC 1 cut(s) 752
HapII CCGG 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 4 cut(s) 71, 178, 658, 895
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 1 cut(s) 323
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 3 cut(s) 234, 345, 574
Hpy188III TCNNGA 4 cut(s) 104, 195, 475, 505
Hpy8I GTNNAC 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 394, 534
HpyCH4III ACNGT 2 cut(s) 214, 650
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 5 cut(s) 437, 725, 746, 836, 842
HpyF3I CTNAG 5 cut(s) 12, 231, 263, 300, 857
HpySE526I ACGT 1 cut(s) 707
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 4 cut(s) 71, 178, 658, 895
KpnI GGTACC 1 cut(s) 654
Kzo9I GATC 6 cut(s) 100, 142, 234, 350, 370, 403
LmnI GCTCC 4 cut(s) 13, 197, 346, 466
LweI GCATC 5 cut(s) 126, 286, 323, 802, 829
MaeI CTAG 2 cut(s) 219, 686
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 3 cut(s) 214, 320, 708
MalI GATC 6 cut(s) 102, 144, 236, 352, 372, 405
MboI GATC 6 cut(s) 100, 142, 234, 350, 370, 403
MboII GAAGA 9 cut(s) 44, 47, 119, 234, 257, 296, 788, 862, 876
MflI RGATCY 5 cut(s) 100, 142, 234, 350, 403
MhlI GDGCHC 3 cut(s) 10, 194, 463
MluCI AATT 5 cut(s) 163, 494, 500, 586, 632
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 587
MseI TTAA 4 cut(s) 48, 63, 147, 528
MslI CAYNNNNRTG 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 728
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 3 cut(s) 408, 691, 873
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 3 cut(s) 408, 691, 873
NdeII GATC 6 cut(s) 100, 142, 234, 350, 370, 403
NheI GCTAGC 1 cut(s) 685
NlaIII CATG 4 cut(s) 71, 178, 658, 895
NlaIV GGNNCC 5 cut(s) 102, 193, 405, 462, 652
NmuCI GTSAC 2 cut(s) 320, 708
PaeR7I CTCGAG 1 cut(s) 735
PctI GAATGC 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 871
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 3 cut(s) 406, 689, 871
PspGI CCWGG 3 cut(s) 406, 689, 871
PspN4I GGNNCC 5 cut(s) 102, 193, 405, 462, 652
PspXI VCTCGAGB 1 cut(s) 735
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 2 cut(s) 731, 809
PsuI RGATCY 5 cut(s) 100, 142, 234, 350, 403
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 2 cut(s) 545, 652
RsaNI GTAC 2 cut(s) 544, 651
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 4 cut(s) 48, 63, 147, 528
Sau3AI GATC 6 cut(s) 100, 142, 234, 350, 370, 403
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 408, 691, 873
SduI GDGCHC 3 cut(s) 10, 194, 463
SfaNI GCATC 5 cut(s) 126, 286, 323, 802, 829
SfcI CTRYAG 1 cut(s) 723
Sfr274I CTCGAG 1 cut(s) 735
SlaI CTCGAG 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 146, 735
SmoI CTYRAG 2 cut(s) 146, 735
Sse9I AATT 5 cut(s) 163, 494, 500, 586, 632
SsiI CCGC 1 cut(s) 773
SspI AATATT 1 cut(s) 455
SspMI CTAG 2 cut(s) 219, 686
StyD4I CCNGG 3 cut(s) 406, 689, 871
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 214, 650
TaiI ACGT 1 cut(s) 710
TaqI TCGA 1 cut(s) 736
TasI AATT 5 cut(s) 163, 494, 500, 586, 632
Tru1I TTAA 4 cut(s) 48, 63, 147, 528
Tru9I TTAA 4 cut(s) 48, 63, 147, 528
TscAI CASTG 2 cut(s) 271, 325
TseFI GTSAC 2 cut(s) 320, 708
Tsp45I GTSAC 2 cut(s) 320, 708
TspDTI ATGAA 2 cut(s) 297, 863
TspRI CASTG 2 cut(s) 271, 325
Vha464I CTTAAG 1 cut(s) 146
XapI RAATTY 4 cut(s) 163, 500, 586, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 735
XspI CTAG 2 cut(s) 219, 686
ZraI GACGTC 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.