Rorug05G0538000
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010767
Physical Location & Seq
Reverse (-)
72707512 .. 72708560
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0538000.1

Sequence Viewer

Length: 1026 bp
ATGATTACCAGAGGTATTGCTCCAACCATTGTTACTTACAACTCTTTGATTCATGGAGTTTGCAATATAGGCCAGTGGAAACAAGCTACAAGGCTGTTGGATGAAATGTTGAGTAAAGGTATCTTTCCAAATGTCGTCACCTTCAGTGTCTTGGTTGATACATTCTGTAAGGAAGGGATGGTTGTGGAAGCCAAAACTGTGCTTGAGATAATGATTCAAAGAGGAATTGAGCCCGATATCATTACTCACAACTCAGTTACTGTTTGCGAGGAGAAATGGACGAGGCAAGACAAGGGCTCCATGGTTGATGTTTGGAGTTGTAACATATTGATAAATGGATATTGCAAGGGTAAAAAGATCGATCAGGCTTACAAGATTTTCAACGAAATGCCTCGTATGGAACTTGTTCCTGATACCGTTACTTATACCACTCTTATTGATGGTCTTTGCAAAGCGGGGAGAATTCAAGAAGCAGAAAAGCTCTTGTCTCAGATGCAAGGTTGTGGCCAACATCCAAATGTCCAAACTTATGCTGTTTTACTTGATGCCCTGTGTAACAACCAGCAACTTTCTACGGCAATAGAATTGCTTCAAGAGATGGAAGCCAATAAAGTAGAACTTAATATTGTAGTTTACACTCTTGTTATTGAAGGTTTCTGCAAAGCTGGAAAAATTGAACCCGCAAGAGATCTCTTCTGTGGTTTGTCATCAAAAGGAGTTCAGCCTAATGTGAGAACATACAATATAATGATTCATGGACTTTGTCACGATGGCCTATTAGTTGAAGCAGAAAAGTTTCTGAGAGAAATGGGAGGGAAAGGCTGTTCTCCAGATGGTTGCACCTATAACATCATTATCCGAGGGTTCTTAAATAACAATGAGACATCATGGGCTATAAAACTTATTCAAGAAATGCTTGAGAGGGGTTTCTCTGCAGATGCATCAACTATGGAATTGATAATTGTTTTATTTTCTAAGGATATAGTAGATCCGGCTTTGTTGCCGCTGTTAAAAGATTCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

341

Amino Acids

37.99

Weight (kDa)

5.3

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 3 - 56 5.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 4 - 36 8.6e-11 PPR repeat
PPR_2 PF13041 8 - 57 4.3e-18 PPR repeat family
PPR PF01535 11 - 41 4.1e-07 PPR repeat
PPR_1 PF12854 39 - 71 6.8e-10 PPR repeat
PPR_1 PF12854 99 - 130 5.2e-08 PPR repeat
PPR_2 PF13041 103 - 151 7.9e-19 PPR repeat family
PPR PF01535 106 - 133 4.3e-07 PPR repeat
TPR_24 PF23276 107 - 199 2.6e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 118 - 223 1.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 125 - 186 2.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 134 - 166 2.2e-15 PPR repeat
PPR_2 PF13041 137 - 186 3.5e-18 PPR repeat family
PPR PF01535 140 - 169 2.1e-09 PPR repeat
PPR_1 PF12854 169 - 201 1.5e-06 PPR repeat
PPR_2 PF13041 176 - 221 1.8e-09 PPR repeat family
TPR_24 PF23276 193 - 303 2.2e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 196 - 251 1.3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 205 - 232 1e-05 PPR repeat
PPR_2 PF13041 208 - 256 1.9e-16 PPR repeat family
PPR_3 PF13812 235 - 289 6.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 238 - 270 1.4e-13 PPR repeat
PPR_2 PF13041 245 - 290 1e-14 PPR repeat family
PPR PF01535 246 - 275 3e-08 PPR repeat
PPR_1 PF12854 273 - 305 1.2e-06 PPR repeat
PPR_2 PF13041 280 - 321 2.3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 455, 681, 1004
AclWI GGATC 1 cut(s) 983
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 127
AgsI TTSAA 8 cut(s) 218, 382, 467, 593, 650, 677, 785, 908
AloI GAACNNNNNNTCC 2 cut(s) 808, 840
AluBI AGCT 3 cut(s) 86, 481, 665
AluI AGCT 3 cut(s) 86, 481, 665
Alw26I GTCTC 2 cut(s) 492, 875
AlwI GGATC 1 cut(s) 983
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 3 cut(s) 70, 505, 772
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 3 cut(s) 405, 588, 795
AsuHPI GGTGA 1 cut(s) 130
BalI TGGCCA 1 cut(s) 507
BanII GRGCYC 2 cut(s) 234, 299
BccI CCATC 5 cut(s) 172, 434, 592, 764, 827
BceAI ACGGC 1 cut(s) 591
BcoDI GTCTC 2 cut(s) 492, 875
BfmI CTRYAG 1 cut(s) 933
BglII AGATCT 1 cut(s) 688
BisI GCNGC 1 cut(s) 1004
BlsI GCNGC 1 cut(s) 1005
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 4 cut(s) 483, 535, 928, 950
BpmI CTGGAG 1 cut(s) 813
BpuEI CTTGAG 2 cut(s) 224, 938
Bsa29I ATCGAT 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 300, 859
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bse1I ACTGG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 300, 859
BseGI GGATG 3 cut(s) 106, 183, 511
BseMII CTCAG 3 cut(s) 267, 503, 791
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 284
BshFI GGCC 3 cut(s) 72, 507, 774
BshVI ATCGAT 1 cut(s) 360
BsiSI CCGG 1 cut(s) 992
BsmAI GTCTC 2 cut(s) 492, 875
BsnI GGCC 3 cut(s) 72, 507, 774
Bsp1286I GDGCHC 2 cut(s) 234, 299
Bsp143I GATC 4 cut(s) 357, 361, 688, 988
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 3 cut(s) 455, 681, 1004
BspANI GGCC 3 cut(s) 72, 507, 774
BspCNI CTCAG 3 cut(s) 266, 502, 792
BspDI ATCGAT 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 937
BspPI GGATC 1 cut(s) 983
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 300, 859
BssMI GATC 4 cut(s) 357, 361, 688, 988
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 199, 262, 418
Bst6I CTCTTC 1 cut(s) 698
BstDEI CTNAG 4 cut(s) 253, 489, 800, 975
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 106, 183, 511
BstKTI GATC 4 cut(s) 360, 364, 691, 991
BstMAI GTCTC 2 cut(s) 492, 875
BstMBI GATC 4 cut(s) 357, 361, 688, 988
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 933
BstX2I RGATCY 2 cut(s) 688, 988
BstYI RGATCY 2 cut(s) 688, 988
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 3 cut(s) 72, 507, 774
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 106, 183, 511
BtsIMutI CAGTG 2 cut(s) 80, 151
CaiI CAGNNNCTG 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 4 cut(s) 53, 301, 755, 888
DdeI CTNAG 4 cut(s) 253, 489, 800, 975
DpnI GATC 4 cut(s) 359, 363, 690, 990
DpnII GATC 4 cut(s) 357, 361, 688, 988
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 234, 299
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 462
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 943
EcoT38I GRGCYC 2 cut(s) 234, 299
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 56, 304, 758, 891
FalI AAGNNNNNCTT 4 cut(s) 603, 635, 900, 932
FatI CATG 4 cut(s) 52, 300, 754, 887
FauI CCCGC 2 cut(s) 448, 688
Fnu4HI GCNGC 1 cut(s) 1004
FokI GGATG 3 cut(s) 113, 190, 498
FriOI GRGCYC 2 cut(s) 234, 299
Fsp4HI GCNGC 1 cut(s) 1004
GluI GCNGC 1 cut(s) 1004
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 3 cut(s) 72, 507, 774
HapII CCGG 1 cut(s) 992
Hin1II CATG 4 cut(s) 56, 304, 758, 891
HinfI GANTC 4 cut(s) 49, 214, 751, 1016
HpaII CCGG 1 cut(s) 992
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 3 cut(s) 492, 801, 860
Hpy188III TCNNGA 6 cut(s) 410, 467, 593, 767, 830, 908
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 151, 167, 644
HpyCH4III ACNGT 3 cut(s) 199, 262, 418
HpyCH4V TGCA 8 cut(s) 63, 345, 450, 496, 660, 840, 935, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 4 cut(s) 253, 489, 800, 975
Hsp92II CATG 4 cut(s) 56, 304, 758, 891
Kzo9I GATC 4 cut(s) 357, 361, 688, 988
LmnI GCTCC 2 cut(s) 25, 302
LpnPI CCDG 9 cut(s) 22, 86, 350, 423, 563, 575, 651, 843, 1005
LweI GCATC 4 cut(s) 483, 535, 928, 950
MaeIII GTNAC 7 cut(s) 31, 136, 256, 320, 418, 554, 764
MalI GATC 4 cut(s) 359, 363, 690, 990
MboI GATC 4 cut(s) 357, 361, 688, 988
MboII GAAGA 1 cut(s) 685
MflI RGATCY 2 cut(s) 688, 988
MhlI GDGCHC 2 cut(s) 234, 299
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 6 cut(s) 225, 462, 584, 672, 953, 960
MluNI TGGCCA 1 cut(s) 507
MmeI TCCRAC 2 cut(s) 47, 78
MnlI CCTC 8 cut(s) 5, 215, 262, 276, 402, 806, 854, 915
Mox20I TGGCCA 1 cut(s) 507
Mph1103I ATGCAT 1 cut(s) 943
MroXI GAANNNNTTC 3 cut(s) 405, 588, 795
MscI TGGCCA 1 cut(s) 507
MseI TTAA 3 cut(s) 621, 869, 1010
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 1 cut(s) 992
MwoI GCNNNNNNNGC 1 cut(s) 69
NcoI CCATGG 1 cut(s) 300
NdeII GATC 4 cut(s) 357, 361, 688, 988
NlaIII CATG 4 cut(s) 56, 304, 758, 891
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 136, 764
NsiI ATGCAT 1 cut(s) 943
PdmI GAANNNNTTC 3 cut(s) 405, 588, 795
PfeI GAWTC 4 cut(s) 49, 214, 751, 1016
PflFI GACNNNGTC 1 cut(s) 762
PkrI GCNGC 1 cut(s) 1005
PspN4I GGNNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 2 cut(s) 688, 988
PsyI GACNNNGTC 1 cut(s) 762
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 3 cut(s) 621, 869, 1010
SatI GCNGC 1 cut(s) 1004
Sau3AI GATC 4 cut(s) 357, 361, 688, 988
SduI GDGCHC 2 cut(s) 234, 299
SetI ASST 9 cut(s) 16, 88, 121, 143, 483, 502, 655, 667, 845
SfaNI GCATC 4 cut(s) 483, 535, 928, 950
SfcI CTRYAG 1 cut(s) 933
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 203, 917
SmoI CTYRAG 2 cut(s) 203, 917
Sse9I AATT 6 cut(s) 225, 462, 584, 672, 953, 960
SsiI CCGC 3 cut(s) 455, 681, 1004
SspI AATATT 1 cut(s) 625
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 199, 262, 418
TaqI TCGA 1 cut(s) 360
TasI AATT 6 cut(s) 225, 462, 584, 672, 953, 960
TauI GCSGC 1 cut(s) 1006
TfiI GAWTC 4 cut(s) 49, 214, 751, 1016
Tru1I TTAA 3 cut(s) 621, 869, 1010
Tru9I TTAA 3 cut(s) 621, 869, 1010
TscAI CASTG 2 cut(s) 80, 151
TseFI GTSAC 2 cut(s) 136, 764
Tsp45I GTSAC 2 cut(s) 136, 764
TspDTI ATGAA 3 cut(s) 41, 117, 743
TspRI CASTG 2 cut(s) 80, 151
Tth111I GACNNNGTC 1 cut(s) 762
XapI RAATTY 1 cut(s) 462
XmnI GAANNNNTTC 3 cut(s) 405, 588, 795
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.