Rh6BG048200
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010767
Physical Location & Seq
Forward (+)
8000263 .. 8009760
9498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG048200.1

Sequence Viewer

Length: 900 bp
ATGGGCGCTCCTAAGCAGAAATGGAATGCAGAAGAAGAAGCAGCCCTTAAAGCTGGAGTGGTTAAACATGGGGCTGGTAAATGGCGGACCATACTTAAAGATCCAGAGTTTGCTCGCATCTTGTATCTTCGCTCAAATGTAGATCTTAAGGATAAGTGGAGAAATTTGAGTGTCATGGTAAATGGATGGGGCTCCCGAGATAAGTGTAAGACAGTAACTAGAAGAATGCCTCAGGTCCCCAAACAGGAAGATAGTTCTATGGCTCTCAGTGCTGGTCAAAGCGATGAAGAAGTTATGGATGCTAAGCCTATGACAGCATCCAGTGATTCACAGCAGGTTTCTGCTCCGAAGAGATCCATCGTGAGGTTGGACGATCTTATTATGGAGGCGATAACTAGCTTGAAGGATCCAGGTGGTTCTAATAAGACTACTATTGCTACATATATAGAGGAACAATATTGGGCTCCACCAGATTTCAAGAGGCTGTTGTCAGCTAAATTAAAATTCTTGACAGCAAGCGGTAAACTGATTAAGGTAAAACGAAGGTACAGGATTGCCCCTACTCCAACATTTTCGGAAAAAAGAAGAAATTCTTCTATGTTTATGTTTGAGGGCAGGCAGCGGGCTTCCCCGAAGTTTGATAAGGATGATGGTACCGTGCTTATGAAAACCCAGATTGATTTAGAGCTAGCCAAGATGAGGACTATGACCTCACAAGAGGCTGCTGCAGCTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCTGCGATAGCAGAAGCGGAAGAGGCAGCTAGGGAAGCCGAAGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGATGCAGCAATGAAGACACTGAAAGGAAGGAATCCTGCAAAAATGGTAAAGTCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.02

Weight (kDa)

9.5

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 56 1e-06 Myb-like DNA-binding domain
Linker_histone PF00538 123 - 180 6.2e-10 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 653
AciI CCGC 4 cut(s) 85, 519, 622, 776
AclWI GGATC 4 cut(s) 95, 348, 401, 414
AcsI RAATTY 3 cut(s) 163, 503, 589
AfaI GTAC 2 cut(s) 548, 655
AfiI CCNNNNNNNGG 3 cut(s) 244, 363, 699
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 403, 478
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 9 cut(s) 53, 399, 494, 688, 731, 761, 788, 812, 833
AluI AGCT 9 cut(s) 53, 399, 494, 688, 731, 761, 788, 812, 833
AlwI GGATC 4 cut(s) 95, 348, 401, 414
AlwNI CAGNNNCTG 3 cut(s) 734, 761, 812
Ama87I CYCGRG 2 cut(s) 195, 738
ApoI RAATTY 3 cut(s) 163, 503, 589
Asp700I GAANNNNTTC 2 cut(s) 589, 592
Asp718I GGTACC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 87, 235
AsuNHI GCTAGC 1 cut(s) 688
AvaI CYCGRG 2 cut(s) 195, 738
AvaII GGWCC 2 cut(s) 87, 235
AxyI CCTNAGG 1 cut(s) 231
BamHI GGATCC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 2 cut(s) 194, 466
BbsI GAAGAC 1 cut(s) 860
BccI CCATC 3 cut(s) 180, 365, 644
BciT130I CCWGG 1 cut(s) 411
BfaI CTAG 4 cut(s) 219, 396, 689, 789
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 325
BglII AGATCT 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 2 cut(s) 87, 235
BmeT110I CYCGRG 2 cut(s) 195, 738
BmgT120I GGNCC 2 cut(s) 87, 235
BmiI GGNNCC 5 cut(s) 193, 237, 408, 465, 655
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 126, 289, 326, 805, 832
BmtI GCTAGC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 860
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 363, 699
Bse1I ACTGG 1 cut(s) 321
Bse21I CCTNAGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 1 cut(s) 411
BseGI GGATG 4 cut(s) 191, 304, 317, 652
BseLI CCNNNNNNNGG 3 cut(s) 244, 363, 699
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 245, 280
BseNI ACTGG 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 653
BsiHKCI CYCGRG 2 cut(s) 195, 738
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 244, 363, 699
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 31, 231
BsoBI CYCGRG 2 cut(s) 195, 738
Bsp1286I GDGCHC 2 cut(s) 194, 466
Bsp143I GATC 5 cut(s) 100, 142, 353, 373, 406
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 4 cut(s) 85, 519, 622, 776
BspCNI CTCAG 2 cut(s) 244, 279
BspLI GGNNCC 5 cut(s) 193, 237, 408, 465, 655
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 4 cut(s) 95, 348, 401, 414
BspT107I GGYRCC 1 cut(s) 653
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 1 cut(s) 321
BssMI GATC 5 cut(s) 100, 142, 353, 373, 406
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 214, 658
Bst6I CTCTTC 2 cut(s) 344, 774
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 2 cut(s) 734, 761
BstC8I GCNNGC 5 cut(s) 115, 517, 617, 624, 690
BstDEI CTNAG 4 cut(s) 12, 231, 266, 303
BstF5I GGATG 4 cut(s) 191, 304, 317, 652
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 5 cut(s) 103, 145, 356, 376, 409
BstMBI GATC 5 cut(s) 100, 142, 353, 373, 406
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 726
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 4 cut(s) 100, 142, 353, 406
BstYI RGATCY 4 cut(s) 100, 142, 353, 406
Bsu36I CCTNAGG 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 4 cut(s) 191, 304, 317, 652
BtsIMutI CAGTG 3 cut(s) 274, 328, 857
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 5 cut(s) 115, 517, 617, 624, 690
CaiI CAGNNNCTG 3 cut(s) 734, 761, 812
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 87, 235
Csp6I GTAC 2 cut(s) 547, 654
CviAII CATG 3 cut(s) 68, 175, 895
CviQI GTAC 2 cut(s) 547, 654
DdeI CTNAG 4 cut(s) 12, 231, 266, 303
DpnI GATC 5 cut(s) 102, 144, 355, 375, 408
DpnII GATC 5 cut(s) 100, 142, 353, 373, 406
Eam1104I CTCTTC 2 cut(s) 344, 774
EarI CTCTTC 2 cut(s) 344, 774
EciI GGCGGA 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 194, 466
Eco47I GGWCC 2 cut(s) 87, 235
Eco81I CCTNAGG 1 cut(s) 231
Eco88I CYCGRG 2 cut(s) 195, 738
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 409
EcoT38I GRGCYC 2 cut(s) 194, 466
FaeI CATG 3 cut(s) 71, 178, 898
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 577, 609
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 67, 174, 894
FauI CCCGC 1 cut(s) 615
FokI GGATG 4 cut(s) 198, 304, 311, 659
FriOI GRGCYC 2 cut(s) 194, 466
FspBI CTAG 4 cut(s) 219, 396, 689, 789
GlaI GCGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 9
HhaI GCGC 1 cut(s) 8
Hin1II CATG 3 cut(s) 71, 178, 898
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 831
HinfI GANTC 2 cut(s) 326, 871
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 348, 577
Hpy188III TCNNGA 5 cut(s) 104, 195, 361, 478, 508
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 3 cut(s) 397, 537, 861
HpyCH4III ACNGT 2 cut(s) 214, 658
HpyCH4V TGCA 7 cut(s) 29, 728, 749, 818, 839, 845, 878
HpyF3I CTNAG 4 cut(s) 12, 231, 266, 303
Hsp92II CATG 3 cut(s) 71, 178, 898
HspAI GCGC 1 cut(s) 6
KpnI GGTACC 1 cut(s) 657
Kzo9I GATC 5 cut(s) 100, 142, 353, 373, 406
LmnI GCTCC 4 cut(s) 13, 197, 349, 469
LweI GCATC 5 cut(s) 126, 289, 326, 805, 832
MaeI CTAG 4 cut(s) 219, 396, 689, 789
MaeIII GTNAC 1 cut(s) 214
MalI GATC 5 cut(s) 102, 144, 355, 375, 408
MboI GATC 5 cut(s) 100, 142, 353, 373, 406
MflI RGATCY 4 cut(s) 100, 142, 353, 406
MhlI GDGCHC 2 cut(s) 194, 466
MluCI AATT 4 cut(s) 163, 497, 503, 589
MmeI TCCRAC 2 cut(s) 348, 590
MroXI GAANNNNTTC 2 cut(s) 589, 592
MseI TTAA 6 cut(s) 48, 63, 96, 147, 500, 531
MspA1I CMGCKG 2 cut(s) 622, 731
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 2 cut(s) 31, 231
MvaI CCWGG 1 cut(s) 411
NdeII GATC 5 cut(s) 100, 142, 353, 373, 406
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 3 cut(s) 71, 178, 898
NlaIV GGNNCC 5 cut(s) 193, 237, 408, 465, 655
PaeR7I CTCGAG 1 cut(s) 738
PctI GAATGC 2 cut(s) 31, 231
PdmI GAANNNNTTC 2 cut(s) 589, 592
PfeI GAWTC 2 cut(s) 326, 871
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 5 cut(s) 193, 237, 408, 465, 655
PspPI GGNCC 2 cut(s) 87, 235
PspPPI RGGWCCY 1 cut(s) 235
PspXI VCTCGAGB 1 cut(s) 738
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 3 cut(s) 734, 761, 812
PsuI RGATCY 4 cut(s) 100, 142, 353, 406
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 2 cut(s) 548, 655
RsaNI GTAC 2 cut(s) 547, 654
SaqAI TTAA 6 cut(s) 48, 63, 96, 147, 500, 531
Sau3AI GATC 5 cut(s) 100, 142, 353, 373, 406
Sau96I GGNCC 2 cut(s) 87, 235
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 2 cut(s) 194, 466
SfaNI GCATC 5 cut(s) 126, 289, 326, 805, 832
SfcI CTRYAG 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 738
SinI GGWCC 2 cut(s) 87, 235
SlaI CTCGAG 1 cut(s) 738
SmlI CTYRAG 2 cut(s) 146, 738
SmoI CTYRAG 2 cut(s) 146, 738
Sse9I AATT 4 cut(s) 163, 497, 503, 589
SsiI CCGC 4 cut(s) 85, 519, 622, 776
SspI AATATT 1 cut(s) 458
SspMI CTAG 4 cut(s) 219, 396, 689, 789
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 214, 658
TaqI TCGA 1 cut(s) 739
TasI AATT 4 cut(s) 163, 497, 503, 589
TfiI GAWTC 2 cut(s) 326, 871
Tru1I TTAA 6 cut(s) 48, 63, 96, 147, 500, 531
Tru9I TTAA 6 cut(s) 48, 63, 96, 147, 500, 531
TscAI CASTG 3 cut(s) 274, 328, 864
TspDTI ATGAA 3 cut(s) 300, 680, 866
TspRI CASTG 3 cut(s) 274, 328, 864
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 87, 235
XapI RAATTY 3 cut(s) 163, 503, 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 738
XmnI GAANNNNTTC 2 cut(s) 589, 592
XspI CTAG 4 cut(s) 219, 396, 689, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.