Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003707.1

Orthogroup ID

OG0010767

Physical Location & Seq

Genomic Coordinates Reverse (-)

22009 .. 27652

Gene Structure 5644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003707.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgggcgctcctaagcagaaatggaatgcagaagaagaagcagcccttaaagctggagtggttaaacatggggctggtaaatggcggaccatacttaaagatccagagtttgctcgcatcttgtatcttcgctcaaatgtagatcttaaggataagtggagaaatttgagtgtcatggtaaatggatggggctcccgagataagtgtaagacagtaactagaagaatgcctcaggtccccaaacaggaagatagttctatggctctcagtgctggtcaaagtgatgaagaagttatggatgctaagcctatgacagcatccagtgattcacagcaggtttctgctccgaagagatccatcgtgaggttggacgatcttattatggaggcgataactagcttaaaggatccaggtggttctaataagactactattgctacatatatagaggaacaatattgggctccaccagatttcaagaggctgttgtcggcaaaattaaaattcttgacagcaagcggtaaactgattaaggtaaaacgaaggtacaggattgcccctactccaacattttcggaaaaaagaagaaattcttctatgtttctgtttgagggcaggcagagggcttccccgaagtttgataaggatgatggtaccatgcttatgaaaacccagattgatttagagctagccaagatgaggaccatgacctcacaagaggctgctgcagctgctgctcgagcagttgcagaggcagaagctgcgatagcagaagcggaagaggcagctagggaagccgaagcagcagaagctgatgcagaagcagcacaagcttttgcagatgcagcaatgaagacactaaaaggaaggaatcctgcaaagatgatgagtcgagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.04

Weight (kDa)

9.52

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49950 AT1G49950 AT1G49950
fragaria_vesca	FvH4_2g03730
malus_domestica	MD10G1107300.v1.1
prunus_persica	Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis	pycom10g09200
rosa_chinensis	RchiOBHm_Chr6g0252701
rosa_laevigata	RLG00000015076
rosa_multiflora	Rmu_sc0003707.1_g000008
rosa_roxburghii	Rroxscaffold_7G00212470
rosa_rugosa	Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha	Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana	Rw6G004900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
Acc65I	GGTACC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	653
AciI	CCGC	3 cut(s)	85, 519, 776
AclWI	GGATC	4 cut(s)	95, 348, 401, 414
AcsI	RAATTY	3 cut(s)	163, 503, 589
AfaI	GTAC	2 cut(s)	548, 655
AfiI	CCNNNNNNNGG	3 cut(s)	244, 363, 699
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	9 cut(s)	53, 399, 688, 731, 761, 788, 812, 833, 896
AluI	AGCT	9 cut(s)	53, 399, 688, 731, 761, 788, 812, 833, 896
AlwI	GGATC	4 cut(s)	95, 348, 401, 414
AlwNI	CAGNNNCTG	3 cut(s)	734, 761, 812
Ama87I	CYCGRG	2 cut(s)	195, 738
ApoI	RAATTY	3 cut(s)	163, 503, 589
Asp700I	GAANNNNTTC	2 cut(s)	589, 592
Asp718I	GGTACC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	87, 235, 702
AsuNHI	GCTAGC	1 cut(s)	688
AvaI	CYCGRG	2 cut(s)	195, 738
AvaII	GGWCC	3 cut(s)	87, 235, 702
AxyI	CCTNAGG	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	653
BanII	GRGCYC	2 cut(s)	194, 466
BbsI	GAAGAC	1 cut(s)	860
BccI	CCATC	3 cut(s)	180, 365, 644
BciT130I	CCWGG	1 cut(s)	411
BfaI	CTAG	4 cut(s)	219, 396, 689, 789
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	3 cut(s)	87, 235, 702
BmeT110I	CYCGRG	2 cut(s)	195, 738
BmgT120I	GGNCC	3 cut(s)	87, 235, 702
BmiI	GGNNCC	5 cut(s)	193, 237, 408, 465, 655
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	5 cut(s)	126, 289, 326, 805, 832
BmtI	GCTAGC	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 363, 699
Bse1I	ACTGG	1 cut(s)	321
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	191, 304, 317, 652
BseLI	CCNNNNNNNGG	3 cut(s)	244, 363, 699
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	245, 280
BseNI	ACTGG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	653
BsiHKCI	CYCGRG	2 cut(s)	195, 738
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	244, 363, 699
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	31, 231
BsoBI	CYCGRG	2 cut(s)	195, 738
Bsp1286I	GDGCHC	2 cut(s)	194, 466
Bsp143I	GATC	5 cut(s)	100, 142, 353, 373, 406
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	85, 519, 776
BspCNI	CTCAG	2 cut(s)	244, 279
BspLI	GGNNCC	5 cut(s)	193, 237, 408, 465, 655
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	692
BspPI	GGATC	4 cut(s)	95, 348, 401, 414
BspT107I	GGYRCC	1 cut(s)	653
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	321
BssMI	GATC	5 cut(s)	100, 142, 353, 373, 406
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	344, 774
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	2 cut(s)	734, 761
BstC8I	GCNNGC	4 cut(s)	115, 517, 617, 690
BstDEI	CTNAG	4 cut(s)	12, 231, 266, 303
BstF5I	GGATG	4 cut(s)	191, 304, 317, 652
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	5 cut(s)	103, 145, 356, 376, 409
BstMBI	GATC	5 cut(s)	100, 142, 353, 373, 406
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	726
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	4 cut(s)	100, 142, 353, 406
BstYI	RGATCY	4 cut(s)	100, 142, 353, 406
Bsu36I	CCTNAGG	1 cut(s)	231
BtsCI	GGATG	4 cut(s)	191, 304, 317, 652
BtsIMutI	CAGTG	2 cut(s)	274, 328
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	115, 517, 617, 690
CaiI	CAGNNNCTG	3 cut(s)	734, 761, 812
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	87, 235, 702
Csp6I	GTAC	2 cut(s)	547, 654
CviAII	CATG	4 cut(s)	68, 175, 658, 706
CviQI	GTAC	2 cut(s)	547, 654
DdeI	CTNAG	4 cut(s)	12, 231, 266, 303
DpnI	GATC	5 cut(s)	102, 144, 355, 375, 408
DpnII	GATC	5 cut(s)	100, 142, 353, 373, 406
Eam1104I	CTCTTC	2 cut(s)	344, 774
EarI	CTCTTC	2 cut(s)	344, 774
EciI	GGCGGA	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	194, 466
Eco47I	GGWCC	3 cut(s)	87, 235, 702
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	2 cut(s)	195, 738
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	194, 466
FaeI	CATG	4 cut(s)	71, 178, 661, 709
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 577, 609
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	4 cut(s)	67, 174, 657, 705
FokI	GGATG	4 cut(s)	198, 304, 311, 659
FriOI	GRGCYC	2 cut(s)	194, 466
FspBI	CTAG	4 cut(s)	219, 396, 689, 789
GlaI	GCGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	9
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	71, 178, 661, 709
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	3 cut(s)	326, 871, 889
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	348, 577
Hpy188III	TCNNGA	5 cut(s)	104, 195, 361, 478, 508
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	537, 861
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	7 cut(s)	29, 728, 749, 818, 839, 845, 878
HpyF3I	CTNAG	4 cut(s)	12, 231, 266, 303
Hsp92II	CATG	4 cut(s)	71, 178, 661, 709
HspAI	GCGC	1 cut(s)	6
KpnI	GGTACC	1 cut(s)	657
Kzo9I	GATC	5 cut(s)	100, 142, 353, 373, 406
LmnI	GCTCC	4 cut(s)	13, 197, 349, 469
LweI	GCATC	5 cut(s)	126, 289, 326, 805, 832
MaeI	CTAG	4 cut(s)	219, 396, 689, 789
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	5 cut(s)	102, 144, 355, 375, 408
MboI	GATC	5 cut(s)	100, 142, 353, 373, 406
MflI	RGATCY	4 cut(s)	100, 142, 353, 406
MhlI	GDGCHC	2 cut(s)	194, 466
MluCI	AATT	4 cut(s)	163, 497, 503, 589
MlyI	GAGTC	1 cut(s)	898
MmeI	TCCRAC	2 cut(s)	348, 590
MroXI	GAANNNNTTC	2 cut(s)	589, 592
MseI	TTAA	7 cut(s)	48, 63, 96, 147, 401, 500, 531
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	731
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	2 cut(s)	31, 231
MvaI	CCWGG	1 cut(s)	411
NdeII	GATC	5 cut(s)	100, 142, 353, 373, 406
NheI	GCTAGC	1 cut(s)	688
NlaIII	CATG	4 cut(s)	71, 178, 661, 709
NlaIV	GGNNCC	5 cut(s)	193, 237, 408, 465, 655
PaeR7I	CTCGAG	1 cut(s)	738
PctI	GAATGC	2 cut(s)	31, 231
PdmI	GAANNNNTTC	2 cut(s)	589, 592
PfeI	GAWTC	2 cut(s)	326, 871
PleI	GAGTC	1 cut(s)	897
PpsI	GAGTC	1 cut(s)	897
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	5 cut(s)	193, 237, 408, 465, 655
PspPI	GGNCC	3 cut(s)	87, 235, 702
PspPPI	RGGWCCY	1 cut(s)	235
PspXI	VCTCGAGB	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	730
PstNI	CAGNNNCTG	3 cut(s)	734, 761, 812
PsuI	RGATCY	4 cut(s)	100, 142, 353, 406
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	2 cut(s)	548, 655
RsaNI	GTAC	2 cut(s)	547, 654
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	7 cut(s)	48, 63, 96, 147, 401, 500, 531
Sau3AI	GATC	5 cut(s)	100, 142, 353, 373, 406
Sau96I	GGNCC	3 cut(s)	87, 235, 702
SchI	GAGTC	1 cut(s)	898
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	194, 466
SfaNI	GCATC	5 cut(s)	126, 289, 326, 805, 832
SfcI	CTRYAG	1 cut(s)	726
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	3 cut(s)	87, 235, 702
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	146, 738
SmoI	CTYRAG	2 cut(s)	146, 738
Sse9I	AATT	4 cut(s)	163, 497, 503, 589
SsiI	CCGC	3 cut(s)	85, 519, 776
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	4 cut(s)	219, 396, 689, 789
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	739, 892
TasI	AATT	4 cut(s)	163, 497, 503, 589
TfiI	GAWTC	2 cut(s)	326, 871
Tru1I	TTAA	7 cut(s)	48, 63, 96, 147, 401, 500, 531
Tru9I	TTAA	7 cut(s)	48, 63, 96, 147, 401, 500, 531
TscAI	CASTG	2 cut(s)	274, 328
TspDTI	ATGAA	3 cut(s)	300, 680, 866
TspRI	CASTG	2 cut(s)	274, 328
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	3 cut(s)	87, 235, 702
XapI	RAATTY	3 cut(s)	163, 503, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	738
XmnI	GAANNNNTTC	2 cut(s)	589, 592
XspI	CTAG	4 cut(s)	219, 396, 689, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.