Rh6CG046900
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010767
Physical Location & Seq
Forward (+)
4630699 .. 4637755
7057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG046900.1

Sequence Viewer

Length: 726 bp
ATGGTAAATGGATGGGGCTCCCGAGATAAGTGTAAGACAGTAACTAGAAGAATGCCTCAGGTCCCCAAACAGGAAGATAGTTCTATGGCTCTCAGTGCTGGTCAAAGTGATGAAGAAGTTATGGATGCTAAGCCTATGACAGCATCCAGTGATTCACAGCAGGTTTCTGCTCCGAAGAGATCCATCGTGAGGTTGGACGATCTTATTATGGAGGCAATAACTAGCTTGAAGGATCCAGGTGGTTCTAATAAGACTACTATTGCTACATATATAGAGGAACAATATTGGGCTCCACCAGATTTCAAGAGGCTGTTGTCGGCAAAATTAAAATTCTTGACAGCAAGCCGTAAACTGATTAAGGTAAAACGAAGGTACAGGATTGCCCCTACTCCAACATTTTTGGAAAAAAGAAGAAATTCTCCTATGTTTCTGTTTGAGGGCAGGCAGAGGGCTTCCCCGAAGTTTGATAAGGATGATGGTACCATGCTTATGAAAACCCAGATTGATTTAGAGCTAGCCAAGATGAGGACCATGACCTCACAAGAGGCTGCTGCAGCTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCTGCGATAGCAGAAGCGGAAGAGGCAGCTAGGGAAGCCGAAGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGATGCAGCAATGAAGACACTAAAAGGAAGGAATCCTGCAAAGATGATGAGTCGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

241

Amino Acids

26.56

Weight (kDa)

9.34

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 65 - 122 5e-09 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49950 AT1G49950 AT1G49950
fragaria_vesca FvH4_2g03730
malus_domestica MD10G1107300.v1.1
prunus_persica Prupe.8G146200_v2.0.a1 Prupe.8G146200_v2.0.a1
pyrus_communis pycom10g09200
rosa_chinensis RchiOBHm_Chr6g0252701
rosa_laevigata RLG00000015076
rosa_multiflora Rmu_sc0003707.1_g000008
rosa_roxburghii Rroxscaffold_7G00212470
rosa_rugosa Rorug05G0537900 Rorug05G0538000 Rorug05G0538100
rosa_samantha Rh6AG054400 Rh6BG048200 Rh6CG046900 Rh6DG042400
rosa_wichuraiana Rw6G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 479
AciI CCGC 1 cut(s) 602
AclWI GGATC 3 cut(s) 174, 227, 240
AcsI RAATTY 2 cut(s) 329, 415
AfaI GTAC 2 cut(s) 374, 481
AfiI CCNNNNNNNGG 3 cut(s) 70, 189, 525
AgsI TTSAA 2 cut(s) 229, 304
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 8 cut(s) 225, 514, 557, 587, 614, 638, 659, 722
AluI AGCT 8 cut(s) 225, 514, 557, 587, 614, 638, 659, 722
AlwI GGATC 3 cut(s) 174, 227, 240
AlwNI CAGNNNCTG 3 cut(s) 560, 587, 638
Ama87I CYCGRG 2 cut(s) 21, 564
ApoI RAATTY 2 cut(s) 329, 415
Asp700I GAANNNNTTC 1 cut(s) 415
Asp718I GGTACC 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 61, 528
AsuNHI GCTAGC 1 cut(s) 514
AvaI CYCGRG 2 cut(s) 21, 564
AvaII GGWCC 2 cut(s) 61, 528
AxyI CCTNAGG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 2 cut(s) 20, 292
BbsI GAAGAC 1 cut(s) 686
BccI CCATC 3 cut(s) 6, 191, 470
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 237
BfaI CTAG 4 cut(s) 45, 222, 515, 615
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 61, 528
BmeT110I CYCGRG 2 cut(s) 21, 564
BmgT120I GGNCC 2 cut(s) 61, 528
BmiI GGNNCC 5 cut(s) 19, 63, 234, 291, 481
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 4 cut(s) 115, 152, 631, 658
BmtI GCTAGC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 686
Bpu1102I GCTNAGC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 189, 525
Bse1I ACTGG 1 cut(s) 147
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 4 cut(s) 17, 130, 143, 478
BseLI CCNNNNNNNGG 3 cut(s) 70, 189, 525
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 2 cut(s) 71, 106
BseNI ACTGG 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 479
BsiHKCI CYCGRG 2 cut(s) 21, 564
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 70, 189, 525
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 57
BsoBI CYCGRG 2 cut(s) 21, 564
Bsp1286I GDGCHC 2 cut(s) 20, 292
Bsp143I GATC 3 cut(s) 179, 199, 232
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 1 cut(s) 602
BspCNI CTCAG 2 cut(s) 70, 105
BspLI GGNNCC 5 cut(s) 19, 63, 234, 291, 481
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 151
BspOI GCTAGC 1 cut(s) 518
BspPI GGATC 3 cut(s) 174, 227, 240
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 1 cut(s) 147
BssMI GATC 3 cut(s) 179, 199, 232
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 170, 600
BstAPI GCANNNNNTGC 2 cut(s) 560, 587
BstC8I GCNNGC 3 cut(s) 343, 443, 516
BstDEI CTNAG 3 cut(s) 57, 92, 129
BstF5I GGATG 4 cut(s) 17, 130, 143, 478
BstKTI GATC 3 cut(s) 182, 202, 235
BstMBI GATC 3 cut(s) 179, 199, 232
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 2 cut(s) 179, 232
BstYI RGATCY 2 cut(s) 179, 232
Bsu36I CCTNAGG 1 cut(s) 57
BtsCI GGATG 4 cut(s) 17, 130, 143, 478
BtsIMutI CAGTG 2 cut(s) 100, 154
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 343, 443, 516
CaiI CAGNNNCTG 3 cut(s) 560, 587, 638
Cfr13I GGNCC 2 cut(s) 61, 528
Csp6I GTAC 2 cut(s) 373, 480
CviAII CATG 2 cut(s) 484, 532
CviQI GTAC 2 cut(s) 373, 480
DdeI CTNAG 3 cut(s) 57, 92, 129
DpnI GATC 3 cut(s) 181, 201, 234
DpnII GATC 3 cut(s) 179, 199, 232
Eam1104I CTCTTC 2 cut(s) 170, 600
EarI CTCTTC 2 cut(s) 170, 600
Eco24I GRGCYC 2 cut(s) 20, 292
Eco47I GGWCC 2 cut(s) 61, 528
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 2 cut(s) 21, 564
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 20, 292
FaeI CATG 2 cut(s) 487, 535
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 483, 531
FokI GGATG 4 cut(s) 24, 130, 137, 485
FriOI GRGCYC 2 cut(s) 20, 292
FspBI CTAG 4 cut(s) 45, 222, 515, 615
Hin1II CATG 2 cut(s) 487, 535
HindIII AAGCTT 1 cut(s) 657
HinfI GANTC 3 cut(s) 152, 697, 715
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 4 cut(s) 21, 187, 304, 334
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 3 cut(s) 223, 363, 687
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 6 cut(s) 554, 575, 644, 665, 671, 704
HpyF3I CTNAG 3 cut(s) 57, 92, 129
Hsp92II CATG 2 cut(s) 487, 535
KpnI GGTACC 1 cut(s) 483
Kzo9I GATC 3 cut(s) 179, 199, 232
LmnI GCTCC 3 cut(s) 23, 175, 295
LweI GCATC 4 cut(s) 115, 152, 631, 658
MaeI CTAG 4 cut(s) 45, 222, 515, 615
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 181, 201, 234
MboI GATC 3 cut(s) 179, 199, 232
MboII GAAGA 7 cut(s) 60, 86, 125, 187, 423, 617, 691
MflI RGATCY 2 cut(s) 179, 232
MhlI GDGCHC 2 cut(s) 20, 292
MluCI AATT 3 cut(s) 323, 329, 415
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 2 cut(s) 174, 416
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 2 cut(s) 326, 357
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 237
NdeII GATC 3 cut(s) 179, 199, 232
NheI GCTAGC 1 cut(s) 514
NlaIII CATG 2 cut(s) 487, 535
NlaIV GGNNCC 5 cut(s) 19, 63, 234, 291, 481
PaeR7I CTCGAG 1 cut(s) 564
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 152, 697
PleI GAGTC 1 cut(s) 723
PpsI GAGTC 1 cut(s) 723
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 5 cut(s) 19, 63, 234, 291, 481
PspPI GGNCC 2 cut(s) 61, 528
PspPPI RGGWCCY 1 cut(s) 61
PspXI VCTCGAGB 1 cut(s) 564
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 3 cut(s) 560, 587, 638
PsuI RGATCY 2 cut(s) 179, 232
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 374, 481
RsaNI GTAC 2 cut(s) 373, 480
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 326, 357
Sau3AI GATC 3 cut(s) 179, 199, 232
Sau96I GGNCC 2 cut(s) 61, 528
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 2 cut(s) 20, 292
SfaNI GCATC 4 cut(s) 115, 152, 631, 658
SfcI CTRYAG 1 cut(s) 552
Sfr274I CTCGAG 1 cut(s) 564
SinI GGWCC 2 cut(s) 61, 528
SlaI CTCGAG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 3 cut(s) 323, 329, 415
SsiI CCGC 1 cut(s) 602
SspI AATATT 1 cut(s) 284
SspMI CTAG 4 cut(s) 45, 222, 515, 615
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 565, 718
TasI AATT 3 cut(s) 323, 329, 415
TfiI GAWTC 2 cut(s) 152, 697
Tru1I TTAA 2 cut(s) 326, 357
Tru9I TTAA 2 cut(s) 326, 357
TscAI CASTG 2 cut(s) 100, 154
TspDTI ATGAA 3 cut(s) 126, 506, 692
TspRI CASTG 2 cut(s) 100, 154
VpaK11BI GGWCC 2 cut(s) 61, 528
XapI RAATTY 2 cut(s) 329, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 4 cut(s) 45, 222, 515, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.