Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015079

Physical Location & Seq

Genomic Coordinates Reverse (-)

18638384 .. 18639536

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGACTCTATCGTCTCCAGTTCGACGATTCTTATGCGATCATATCTCACTCCTCCGGTTCGTTCATGTTCTCCGGCAACCTCCGTTTCCGTCAAACCTCTGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCGTTAAGCTCCGGTGCTAGAAGAACCAGAAAAAGCTCTAGTTCGGTGATAAGATGCGGCGGAATCAAAGAGATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGCCCAGCCGGTTTTGGTTGAATTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCTCAGGAATATGGTGACAAATTGACGATTGTAAAGATTGATCACGACGCTAATCCAAAGTTAATAGCGGAGTTCAAGGTTTATGGTTTACCGCATTTCATTCTCTTCAAGGACGGGAAGGAAGTTCCAGGGAGCAGAAGGGAAGGTGCTATTACAAAGGCCAAGCTTAAGGAGTACATTGATGGTCTCTTGAACTCAATATCTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

182

Amino Acids

19.65

Weight (kDa)

9.06

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	73 - 173	2.7e-27	Thioredoxin
Thioredoxin_2	PF13098	85 - 171	7.1e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50320
fragaria_vesca	FvH4_4g06760
malus_domestica	MD15G1433100.v1.1
prunus_persica	Prupe.1G070700_v2.0.a1
pyrus_communis	pycom13g21100 pycom16g20440
rosa_chinensis	RchiOBHm_Chr4g0398691
rosa_laevigata	RLG00000009331
rosa_multiflora	Rmu_sc0008600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343650
rosa_rugosa	Rorug04G0010900
rosa_samantha	Rh4AG088600 Rh4BG085600 Rh4CG096700 Rh4DG080200
rosa_wichuraiana	Rw4G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	150
AccII	CGCG	1 cut(s)	128
AciI	CCGC	7 cut(s)	128, 136, 204, 207, 297, 404, 428
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	2 cut(s)	244, 512
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	278, 412, 445, 529
AjnI	CCWGG	2 cut(s)	111, 463
AluBI	AGCT	5 cut(s)	105, 156, 183, 323, 502
AluI	AGCT	5 cut(s)	105, 156, 183, 323, 502
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	19, 527
AoxI	GGCC	1 cut(s)	495
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	109, 205, 362
AvaII	GGWCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BccI	CCATC	1 cut(s)	512
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	2 cut(s)	113, 465
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	19, 527
BfaI	CTAG	2 cut(s)	165, 186
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	129, 205
BlsI	GCNGC	2 cut(s)	130, 206
Bme1390I	CCNGG	2 cut(s)	113, 465
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	113, 465
BmsI	GCATC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	2 cut(s)	55, 158
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	113, 465
BseDI	CCNNGG	1 cut(s)	464
BseMII	CTCAG	3 cut(s)	92, 120, 353
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	4 cut(s)	56, 74, 159, 266
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	19, 527
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	38, 312, 376
BspACI	CCGC	7 cut(s)	128, 136, 204, 207, 297, 404, 428
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	93, 119, 352
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	3 cut(s)	38, 312, 376
Bst2UI	CCWGG	2 cut(s)	113, 465
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	446
BstAFI	CTTAAG	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	101, 106, 339
BstEII	GGTNACC	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	41, 315, 379
BstMAI	GTCTC	2 cut(s)	19, 527
BstMBI	GATC	3 cut(s)	38, 312, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 329
BstNI	CCWGG	2 cut(s)	113, 465
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	111, 463
BstUI	CGCG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	497
BveI	ACCTGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	243, 511
CviAII	CATG	1 cut(s)	66
CviQI	GTAC	2 cut(s)	243, 511
DdeI	CTNAG	3 cut(s)	101, 106, 339
DpnI	GATC	3 cut(s)	40, 314, 378
DpnII	GATC	3 cut(s)	38, 312, 376
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	111, 463
EcoT38I	GRGCYC	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	69
FaiI	YATR	6 cut(s)	35, 43, 67, 326, 348, 420
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	129, 205
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	129, 205
FspBI	CTAG	2 cut(s)	165, 186
GluI	GCNGC	2 cut(s)	129, 205
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	4 cut(s)	56, 74, 159, 266
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	4 cut(s)	5, 28, 210, 254
HpaII	CCGG	4 cut(s)	56, 74, 159, 266
HphI	GGTGA	3 cut(s)	109, 205, 362
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	251, 341, 380, 526
Hpy8I	GTNNAC	1 cut(s)	425
Hpy99I	CGWCG	4 cut(s)	28, 128, 287, 386
HpyAV	CCTTC	3 cut(s)	448, 468, 473
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 329
HpyF3I	CTNAG	3 cut(s)	101, 106, 339
Hsp92II	CATG	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	38, 312, 376
LmnI	GCTCC	2 cut(s)	161, 468
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	165, 186
MaeIII	GTNAC	2 cut(s)	115, 350
MalI	GATC	3 cut(s)	40, 314, 378
MboI	GATC	3 cut(s)	38, 312, 376
MboII	GAAGA	2 cut(s)	180, 433
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	278, 308, 356
MnlI	CCTC	4 cut(s)	63, 91, 108, 130
MseI	TTAA	4 cut(s)	152, 398, 504, 547
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	4 cut(s)	56, 74, 159, 266
MspR9I	CCNGG	2 cut(s)	113, 465
MvaI	CCWGG	2 cut(s)	113, 465
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	303, 329
NdeII	GATC	3 cut(s)	38, 312, 376
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	115, 350
PaqCI	CACCTGC	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	28, 210, 254
PkrI	GCNGC	2 cut(s)	130, 206
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	111, 463
PspEI	GGTNACC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	2 cut(s)	111, 463
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	299
RsaI	GTAC	2 cut(s)	244, 512
RsaNI	GTAC	2 cut(s)	243, 511
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	152, 398, 504, 547
SatI	GCNGC	2 cut(s)	129, 205
Sau3AI	GATC	3 cut(s)	38, 312, 376
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	113, 465
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	278, 308, 356
SsiI	CCGC	7 cut(s)	128, 136, 204, 207, 297, 404, 428
SspMI	CTAG	2 cut(s)	165, 186
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	111, 463
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	23, 239, 252
TasI	AATT	3 cut(s)	278, 308, 356
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	2 cut(s)	131, 207
TfiI	GAWTC	3 cut(s)	28, 210, 254
Tru1I	TTAA	4 cut(s)	152, 398, 504, 547
Tru9I	TTAA	4 cut(s)	152, 398, 504, 547
TseFI	GTSAC	2 cut(s)	115, 350
Tsp45I	GTSAC	2 cut(s)	115, 350
TspDTI	ATGAA	2 cut(s)	54, 424
TspGWI	ACGGA	3 cut(s)	73, 79, 112
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	278
XspI	CTAG	2 cut(s)	165, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.