Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015079

Physical Location & Seq

Genomic Coordinates Forward (+)

17326063 .. 17327512

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGACACCGTCGTCTCCAAATCGGCGTTACTGTCCATCCCAATAGCTTCACTCCCACCGGTTCGTACAGTTACTTCAAGCTCTTACTCTAACAAGCTCTTCTCCGGCTTCTTCTACGGTTCTGCAAGCCGAATAAGACAAGTGGGTTTTCGAAACTATTCTTCTTCTGCTCGTGCAGTTCGTACAGTTCCCAAGTTTTCAATTGCTTCGAGTGCTGGGATTCAGGAAATTGACGAGACCCAGTTCCAGGATTCGGTTCTTAACTCGGACCGTCCGGTTCTCGTCGAGTTCGTCGCCAGTTGGTGCGGTCCTTGCCGCTTAATCTCCCCTGCTATGGAATGGCTCGCTCAGCTTATTTGTTGCACTCAGGAATACAAGGACAGGTTAACCGTTGTTAAGATAGATCATGATGCAAACCCAAAACTGATTGAAGAATACAAAGTTTATGGGTTGCCGGCTTTGATTCTCTTCAAAAATGGACAGGAAGTTCCAGAAAGTCGGAGAGAAGGCGCAATTACAAAAGCAAAGCTTCAAGAGTATGTAGATGCTTTGTTGGAGTCAATGTCAGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

192

Amino Acids

21.15

Weight (kDa)

7.61

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50320
fragaria_vesca	FvH4_4g06760
malus_domestica	MD15G1433100.v1.1
prunus_persica	Prupe.1G070700_v2.0.a1
pyrus_communis	pycom13g21100 pycom16g20440
rosa_chinensis	RchiOBHm_Chr4g0398691
rosa_laevigata	RLG00000009331
rosa_multiflora	Rmu_sc0008600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343650
rosa_rugosa	Rorug04G0010900
rosa_samantha	Rh4AG088600 Rh4BG085600 Rh4CG096700 Rh4DG080200
rosa_wichuraiana	Rw4G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AciI	CCGC	2 cut(s)	306, 316
AfaI	GTAC	2 cut(s)	67, 184
AfiI	CCNNNNNNNGG	3 cut(s)	247, 253, 334
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	5 cut(s)	78, 201, 431, 472, 533
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	5 cut(s)	47, 81, 97, 352, 529
AluI	AGCT	5 cut(s)	47, 81, 97, 352, 529
Alw26I	GTCTC	2 cut(s)	19, 230
AsiGI	ACCGGT	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	268, 308
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	268, 308
BarI	GAAGNNNNNNTAC	2 cut(s)	58, 90
BauI	CACGAG	1 cut(s)	171
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	19, 230
BisI	GCNGC	1 cut(s)	316
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	268, 308
BmgT120I	GGNCC	2 cut(s)	268, 308
BmrFI	CCNGG	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	400, 535
BmuI	ACTGGG	1 cut(s)	235
Bpu1102I	GCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	2 cut(s)	58, 274
BsaXI	ACNNNNNCTCC	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 253, 334
Bse118I	RCCGGY	2 cut(s)	58, 454
Bse1I	ACTGG	2 cut(s)	241, 297
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	247, 253, 334
BseMII	CTCAG	2 cut(s)	362, 380
BseNI	ACTGG	2 cut(s)	241, 297
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	195
BshTI	ACCGGT	1 cut(s)	58
BsiSI	CCGG	4 cut(s)	59, 105, 275, 455
BslI	CCNNNNNNNGG	3 cut(s)	247, 253, 334
BsmAI	GTCTC	2 cut(s)	19, 230
BsmBI	CGTCTC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	403
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	306, 316
BspCNI	CTCAG	2 cut(s)	361, 379
BspHI	TCATGA	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	230
BsrFI	RCCGGY	2 cut(s)	58, 454
BsrI	ACTGG	2 cut(s)	241, 297
BssAI	RCCGGY	2 cut(s)	58, 454
BssMI	GATC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	7 cut(s)	10, 33, 70, 119, 187, 272, 391
Bst6I	CTCTTC	2 cut(s)	104, 473
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	127, 345, 456
BstDEI	CTNAG	2 cut(s)	348, 366
BstF5I	GGATG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	2 cut(s)	19, 230
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 312, 349
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	127, 345, 456
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	1 cut(s)	512
Cfr10I	RCCGGY	2 cut(s)	58, 454
Cfr13I	GGNCC	2 cut(s)	268, 308
CpoI	CGGWCCG	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	66, 183
CspAI	ACCGGT	1 cut(s)	58
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	9 cut(s)	47, 81, 97, 108, 129, 343, 352, 458, 529
CviKI_1	RGCY	9 cut(s)	47, 81, 97, 108, 129, 343, 352, 458, 529
CviQI	GTAC	2 cut(s)	66, 183
DdeI	CTNAG	2 cut(s)	348, 366
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	104, 473
EarI	CTCTTC	2 cut(s)	104, 473
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	268, 308
EcoRII	CCWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	410
FaiI	YATR	5 cut(s)	335, 408, 447, 540, 574
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FatI	CATG	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	316
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	1 cut(s)	316
GsaI	CCCAGC	1 cut(s)	219
HapII	CCGG	4 cut(s)	59, 105, 275, 455
HhaI	GCGC	1 cut(s)	512
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	4 cut(s)	220, 251, 463, 557
HpaI	GTTAAC	1 cut(s)	387
HpaII	CCGG	4 cut(s)	59, 105, 275, 455
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	268, 501
Hpy188III	TCNNGA	5 cut(s)	224, 368, 407, 491, 533
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	3 cut(s)	14, 287, 296
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	7 cut(s)	10, 33, 70, 119, 187, 272, 391
HpyCH4V	TGCA	5 cut(s)	125, 176, 363, 413, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 312, 349
HpyF3I	CTNAG	2 cut(s)	348, 366
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	1 cut(s)	510
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	403
LguI	GCTCTTC	1 cut(s)	104
LweI	GCATC	2 cut(s)	400, 535
MaeIII	GTNAC	2 cut(s)	27, 70
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	6 cut(s)	91, 103, 153, 156, 443, 460
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	3 cut(s)	201, 228, 513
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	2 cut(s)	479, 534
MroNI	GCCGGC	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	4 cut(s)	261, 320, 386, 396
MspI	CCGG	4 cut(s)	59, 105, 275, 455
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	212, 312, 349
NaeI	GCCGGC	1 cut(s)	456
NdeII	GATC	1 cut(s)	403
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	151
PagI	TCATGA	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	178, 288
PdiI	GCCGGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	220, 251, 463
PflFI	GACNNNGTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	268, 308
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	2 cut(s)	67, 184
RsaNI	GTAC	2 cut(s)	66, 183
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	261, 320, 386, 396
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	2 cut(s)	268, 308
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	6 cut(s)	49, 83, 99, 354, 386, 531
SfaNI	GCATC	2 cut(s)	400, 535
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	2 cut(s)	268, 308
Sse9I	AATT	3 cut(s)	201, 228, 513
SsiI	CCGC	2 cut(s)	306, 316
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	7 cut(s)	10, 33, 70, 119, 187, 272, 391
TaqI	TCGA	3 cut(s)	151, 209, 285
TasI	AATT	3 cut(s)	201, 228, 513
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	220, 251, 463
Tru1I	TTAA	4 cut(s)	261, 320, 386, 396
Tru9I	TTAA	4 cut(s)	261, 320, 386, 396
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	268, 308
XmnI	GAANNNNTTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.