Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015079

Physical Location & Seq

Genomic Coordinates Forward (+)

6090683 .. 6092913

Gene Structure 2231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGACACCGTCGTCTCCAATTCAGCATTACTTTCCATACCTCCCTTCCCTCCAGTCCGTTCAGTTACCTGCAGCTCTTATTCGCCAACCACTTCTCTCAACCTCTCATCGAAGAAGCACTTCTCCAGCTTCTTCTACACCCAAAAGAAACAAGTGGGTCGACAACATCGCAGTTCTTCTTTTACAGCTCCCAAGTTTTCAATTGCTGCCAGTGCTGCTATTCAGGAAATCAACGAGACCCAGTTTCAGGATTCTGTTCTGAACTCGGACCGTCCGGTTCTTGTCGAGTTTGTTGCCAATTGGTGCGGTCCTTGCCGCTTGATTTCTCCCGCTATGGAATGGATTGCTCAGGAATATAAAGACAGATTAACAGTTGTTAAGATTGATCATGATGCAAACCCACGATTAATTGAAGAATACAAAGTTTATGGTCTGCCTGCGTTGATTCTCTTCAAGAACGGACAGGAAGTTCCAGAAAGTAGAAGAGAGGGTGCAATTACAAAAGTTAAGCTTAAAGAGTATGTTGATGCTTTATTGGAATCTGTATCAGTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

8.4

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	75 - 176	4.2e-28	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50320
fragaria_vesca	FvH4_4g06760
malus_domestica	MD15G1433100.v1.1
prunus_persica	Prupe.1G070700_v2.0.a1
pyrus_communis	pycom13g21100 pycom16g20440
rosa_chinensis	RchiOBHm_Chr4g0398691
rosa_laevigata	RLG00000009331
rosa_multiflora	Rmu_sc0008600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343650
rosa_rugosa	Rorug04G0010900
rosa_samantha	Rh4AG088600 Rh4BG085600 Rh4CG096700 Rh4DG080200
rosa_wichuraiana	Rw4G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	3 cut(s)	306, 316, 330
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	201, 413, 454
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	4 cut(s)	75, 129, 188, 511
AluI	AGCT	4 cut(s)	75, 129, 188, 511
Alw26I	GTCTC	2 cut(s)	19, 230
ApeKI	GCWGC	3 cut(s)	72, 206, 215
AseI	ATTAAT	1 cut(s)	407
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	268, 308
AvaII	GGWCC	2 cut(s)	268, 308
BbvI	GCAGC	3 cut(s)	84, 193, 202
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	19, 230
BfmI	CTRYAG	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	73, 207, 216, 316
BlsI	GCNGC	4 cut(s)	74, 208, 217, 317
Bme18I	GGWCC	2 cut(s)	268, 308
BmgT120I	GGNCC	2 cut(s)	268, 308
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	382, 517
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	2 cut(s)	36, 109
Bpu10I	CCTNAGC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	53, 210, 241
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	53, 210, 241
BseXI	GCAGC	3 cut(s)	84, 193, 202
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	19, 230
BsmBI	CGTCTC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	3 cut(s)	306, 316, 330
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	53, 210, 241
BssMI	GATC	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	10, 272, 373
Bst6I	CTCTTC	2 cut(s)	455, 478
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	2 cut(s)	19, 230
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 215, 312
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	84, 193, 202
BtgZI	GCGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	268, 308
CpoI	CGGWCCG	1 cut(s)	268
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	4 cut(s)	75, 129, 188, 511
CviKI_1	RGCY	4 cut(s)	75, 129, 188, 511
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	455, 478
EarI	CTCTTC	2 cut(s)	455, 478
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	268, 308
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	392
FaiI	YATR	7 cut(s)	38, 335, 357, 390, 429, 522, 556
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 495, 527
FatI	CATG	1 cut(s)	388
FauI	CCCGC	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	4 cut(s)	73, 207, 216, 316
Fsp4HI	GCNGC	4 cut(s)	73, 207, 216, 316
GluI	GCNGC	4 cut(s)	73, 207, 216, 316
GsuI	CTGGAG	2 cut(s)	36, 109
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	251, 445, 539
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	261, 268
Hpy188III	TCNNGA	6 cut(s)	224, 248, 350, 389, 454, 473
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	10, 272, 373
HpyCH4V	TGCA	3 cut(s)	72, 395, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 215, 312
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	84, 193, 202
LweI	GCATC	2 cut(s)	382, 517
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	6 cut(s)	124, 124, 168, 425, 442, 495
MfeI	CAATTG	2 cut(s)	201, 298
MluCI	AATT	5 cut(s)	19, 201, 298, 408, 495
MnlI	CCTC	4 cut(s)	51, 60, 113, 481
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	5 cut(s)	368, 378, 407, 507, 513
MspI	CCGG	1 cut(s)	275
MunI	CAATTG	2 cut(s)	201, 298
MwoI	GCNNNNNNNGC	3 cut(s)	212, 215, 312
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	251, 445, 539
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	74, 208, 217, 317
PshBI	ATTAAT	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	268, 308
PstI	CTGCAG	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	8
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	368, 378, 407, 507, 513
SatI	GCNGC	4 cut(s)	73, 207, 216, 316
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	2 cut(s)	268, 308
SetI	ASST	7 cut(s)	43, 71, 77, 105, 131, 190, 513
SfaNI	GCATC	2 cut(s)	382, 517
SfcI	CTRYAG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	268, 308
Sse9I	AATT	5 cut(s)	19, 201, 298, 408, 495
SsiI	CCGC	3 cut(s)	306, 316, 330
TaaI	ACNGT	3 cut(s)	10, 272, 373
TaqI	TCGA	3 cut(s)	110, 160, 285
TasI	AATT	5 cut(s)	19, 201, 298, 408, 495
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	251, 445, 539
Tru1I	TTAA	5 cut(s)	368, 378, 407, 507, 513
Tru9I	TTAA	5 cut(s)	368, 378, 407, 507, 513
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	3 cut(s)	72, 206, 215
TspGWI	ACGGA	2 cut(s)	47, 474
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	268, 308
VspI	ATTAAT	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.