Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015079

Physical Location & Seq

Genomic Coordinates Forward (+)

18510004 .. 18511693

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG088600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGACACCGTCGTCTCCAATTCAGCACTACTATTCAAACCACCCTTCCCTCCAGTCCGTTCAGTTGCTTGCAACTCTTATTCACCAACCACTTCTCTCAATCTCTCGTCAAAGAAGCACTTCTCCAGCTTCTTCTACACCCAAAAGAAACAAGTTGGTCATCGCAACTCTTCTTGTACAGCTCCCAAGTTTTCAATTGCTTCAAGTGCTACTATTCAGGAAATCAACGAGACCCAGTTTCGGGATACGGTTCTTAACTCGGACCGTCCGGTTCTTGTCGAGTTTGTTGCCAACTGGTGCGGTCCTTGCCGCTTAATTTCTCCCGCTATGGAATGGGTTGCTCAGGAATATAAAGACAGATTAGCAGTTGTTAAGATTGATCATGATGCAAACCCACGATTAATTGAAGAATACAAAGTTTATGGTTTGCCTGCTTTGATTCTCTTCAAGAATGGACAGGAAGTTCCAGAAAGTAGAAGAGAGGGTGCAATTACAAAAGTTAAGCTTAAAGAGTATGTGGATGCTTTTTTGGAATCTATATCAGTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

183

Amino Acids

20.54

Weight (kDa)

8.64

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	73 - 174	1.7e-27	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50320
fragaria_vesca	FvH4_4g06760
malus_domestica	MD15G1433100.v1.1
prunus_persica	Prupe.1G070700_v2.0.a1
pyrus_communis	pycom13g21100 pycom16g20440
rosa_chinensis	RchiOBHm_Chr4g0398691
rosa_laevigata	RLG00000009331
rosa_multiflora	Rmu_sc0008600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343650
rosa_rugosa	Rorug04G0010900
rosa_samantha	Rh4AG088600 Rh4BG085600 Rh4CG096700 Rh4DG080200
rosa_wichuraiana	Rw4G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AciI	CCGC	3 cut(s)	300, 310, 324
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	240, 241
AgsI	TTSAA	5 cut(s)	37, 195, 204, 407, 448
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	3 cut(s)	129, 182, 505
AluI	AGCT	3 cut(s)	129, 182, 505
Alw26I	GTCTC	2 cut(s)	19, 224
AseI	ATTAAT	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	262, 302
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	262, 302
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciVI	GTATCC	1 cut(s)	238
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	19, 224
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme18I	GGWCC	2 cut(s)	262, 302
BmgT120I	GGNCC	2 cut(s)	262, 302
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	376, 511
BmuI	ACTGGG	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	36, 109
Bpu10I	CCTNAGC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 241
Bse1I	ACTGG	3 cut(s)	53, 235, 299
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	240, 241
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	3 cut(s)	53, 235, 299
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	240, 241
BsmAI	GTCTC	2 cut(s)	19, 224
BsmBI	CGTCTC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	3 cut(s)	300, 310, 324
BspCNI	CTCAG	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	53, 235, 299
BssMI	GATC	1 cut(s)	379
Bst4CI	ACNGT	3 cut(s)	10, 250, 266
Bst6I	CTCTTC	3 cut(s)	175, 449, 472
BstAUI	TGTACA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	70, 432
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	2 cut(s)	19, 224
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 306
BsuI	GTATCC	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	70, 432
CciI	TCATGA	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	262, 302
CpoI	CGGWCCG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	177
CspI	CGGWCCG	1 cut(s)	262
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	3 cut(s)	129, 182, 505
CviKI_1	RGCY	3 cut(s)	129, 182, 505
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	3 cut(s)	175, 449, 472
EarI	CTCTTC	3 cut(s)	175, 449, 472
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	262, 302
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	386
FaiI	YATR	7 cut(s)	329, 351, 384, 423, 516, 539, 550
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 489, 521
FatI	CATG	1 cut(s)	382
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	310
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	36, 109
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	439, 533
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	6 cut(s)	218, 242, 344, 383, 448, 467
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	10, 250, 266
HpyCH4V	TGCA	3 cut(s)	72, 389, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 306
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	187
LweI	GCATC	2 cut(s)	376, 511
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	5 cut(s)	124, 162, 419, 436, 489
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	5 cut(s)	19, 195, 315, 402, 489
MnlI	CCTC	2 cut(s)	60, 475
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	6 cut(s)	255, 314, 372, 401, 501, 507
MspI	CCGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	206, 306
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	439, 533
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	262, 302
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
Rsr2I	CGGWCCG	1 cut(s)	262
RsrII	CGGWCCG	1 cut(s)	262
SaqAI	TTAA	6 cut(s)	255, 314, 372, 401, 501, 507
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	262, 302
SetI	ASST	3 cut(s)	131, 184, 507
SfaNI	GCATC	2 cut(s)	376, 511
SinI	GGWCC	2 cut(s)	262, 302
Sse9I	AATT	5 cut(s)	19, 195, 315, 402, 489
SsiI	CCGC	3 cut(s)	300, 310, 324
TaaI	ACNGT	3 cut(s)	10, 250, 266
TaqI	TCGA	1 cut(s)	279
TasI	AATT	5 cut(s)	19, 195, 315, 402, 489
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	439, 533
Tru1I	TTAA	6 cut(s)	255, 314, 372, 401, 501, 507
Tru9I	TTAA	6 cut(s)	255, 314, 372, 401, 501, 507
TspGWI	ACGGA	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	262, 302
VspI	ATTAAT	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.