Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002419

Physical Location & Seq

Genomic Coordinates Reverse (-)

1860590 .. 1863627

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTGGTGGCGCTCAGATTAGGGTACCCAATTATCTGTAGATTGGTTTCTTCCAGGACCAAAAGTTTGGGTCTTGGAAATCTAAAACCCTCCAATATTTCTCTTCAGAATCAGTTGCTTCACAGACCCATCAGCTCAGAAATCTCAAAGCAAGCCAATTTCACAGTCACTTACCTCATAAACTCATGTGGGTTGTCCCCAGAAGATGCAAAGTTGGCAGCTAGTAAGGTAGAGTTGCAATCCCAAGAAGGAGCGGACTCTGTTTTGGCTCTTTTGAGCAGCCATGGCCTCTCTGAAACCCAGATCTCAAAGGTGGTTAAGTCACACCCAAGAGTCCTTTTAGCTGATCCTGAGAAAACCCTTTCACCCAAGATTGAGTTTTTCAGCTCTGTTGGGCTCTCAAGGGTGGACCTTGCTAGGGTTCTAAGTTTTAATCCACATCTGTTGTCAAGAAGCTTGGAGAATCAGATTGTGCCCTCTTATAATTTCCTCAGGAATATGATTTCCAAGGAGAATGTTGTGGCGGTTTTGAAGCGCAGGTCTTGGATGTTCTTGGAGAATCATTCCAGGAATGTGATGCCCAATATTGAGGCTTTGAGGGAGTTGGGTATGCCCAGAGCATGCATTTCTCTGTTGCTTGCTCATGACACCCAAGTGTTGATGCACAATCATGATGAGCTTGTTCAGCTTGTGAATGAGGTCAAGGGGATGGGATTTGATTTGAAGAAGTCGACTTTTGTTGTTGCACTGAGAGCATTGTGTGGGAAGAGCAGTAGGGCCATATGGAATCGAAATCGCGAGATTTACAAGAGGAGTTGGGGCTGGTCTGATGATGATGTTATCTCTGCTTTTAGGAAGAGCCCTCAGTGTATGATTTTGTCTGAGAAGAAGATTATGCGGACAATGGATTTTCTGGTGAATAAGATGGGATGGTCTGCATCAATGATTCCCACATATCCTGTAATTTTGTGTTTCAGTTTGGAGAATAGGATCATCCCGAGGTGTTCGGTTGTCAAAGTTTTGATGAAGAAAGGATTGGTAGATGAAAATGCGAGTCTGGCTTATGCGGTGCTGCCCGCAGAGAAGCAATTCTTGGAGAGGTTTGTGACCAGATATCTCAGCCAAGTGCCTAACCTGTTGAGTGTGTATGAAGGGGAACTTGATTTGCAGGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

392

Amino Acids

44.14

Weight (kDa)

9.43

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	89 - 240	1.7e-25	mTERF
mTERF	PF02536	271 - 364	1.3e-16	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50310 AT1G50310 AT3G19940 AT5G23270
fragaria_vesca	FvH4_2g06240 FvH4_2g06241 FvH4_2g06250
malus_domestica	MD00G1119600.v1.1 MD13G1238600.v1.1 MD13G1238700.v1.1 MD15G1433200.v1.1 MD16G1243500.v1.1
prunus_persica	Prupe.1G070800_v2.0.a1 Prupe.1G070900_v2.0.a1
pyrus_communis	pycom13g21110 pycom13g21120
rosa_chinensis	RchiOBHm_Chr4g0398701 RchiOBHm_Chr6g0256931 RchiOBHm_Chr6g0256941
rosa_laevigata	RLG00000009330 RLG00000014660 RLG00000014663
rosa_multiflora	Rmu_sc0000659.1_g000045 Rmu_sc0008600.1_g000002 Rmu_sc0017404.1_g000011
rosa_roxburghii	Rroxscaffold_5G00343660 Rroxscaffold_7G00208330 Rroxscaffold_7G00208350
rosa_rugosa	Rorug04G0010900 Rorug05G0576400 Rorug05G0576500 Rorug05G0576600
rosa_samantha	Rh4DG080100 Rh6AG095000 Rh6BG086100 Rh6BG086200 Rh6CG082200 Rh6DG077900
rosa_wichuraiana	Rw4G007340 Rw6G008110 Rw6G008130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	528
Acc65I	GGTACC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	731
AccII	CGCG	1 cut(s)	798
AciI	CCGC	5 cut(s)	254, 524, 898, 1067, 1077
AclWI	GGATC	2 cut(s)	341, 998
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	532, 724
AjnI	CCWGG	2 cut(s)	53, 566
AjuI	GAANNNNNNNTTGG	4 cut(s)	1019, 1051, 1076, 1108
AleI	CACNNNNGTG	1 cut(s)	653
AluBI	AGCT	7 cut(s)	135, 221, 344, 387, 456, 679, 688
AluI	AGCT	7 cut(s)	135, 221, 344, 387, 456, 679, 688
AlwI	GGATC	2 cut(s)	341, 998
Ama87I	CYCGRG	1 cut(s)	997
AoxI	GGCC	2 cut(s)	286, 777
ApeKI	GCWGC	3 cut(s)	218, 279, 1072
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
Asp700I	GAANNNNTTC	1 cut(s)	1088
Asp718I	GGTACC	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	13, 537
AspS9I	GGNCC	3 cut(s)	57, 409, 777
AsuHPI	GGTGA	2 cut(s)	357, 928
AvaI	CYCGRG	1 cut(s)	997
AvaII	GGWCC	2 cut(s)	57, 409
AxyI	CCTNAGG	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	2 cut(s)	399, 863
BbvI	GCAGC	3 cut(s)	230, 291, 1059
BccI	CCATC	4 cut(s)	137, 703, 919, 924
BciT130I	CCWGG	2 cut(s)	55, 568
BfaI	CTAG	2 cut(s)	222, 417
BfmI	CTRYAG	1 cut(s)	37
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	528
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	3 cut(s)	219, 280, 1073
BlsI	GCNGC	3 cut(s)	220, 281, 1074
Bme1390I	CCNGG	2 cut(s)	55, 568
Bme18I	GGWCC	2 cut(s)	57, 409
BmeT110I	CYCGRG	1 cut(s)	997
BmgT120I	GGNCC	3 cut(s)	57, 409, 777
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	55, 568
BmsI	GCATC	4 cut(s)	196, 567, 651, 947
BpuEI	CTTGAG	1 cut(s)	385
BsaJI	CCNNGG	3 cut(s)	283, 507, 998
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse21I	CCTNAGG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	55, 568
BseDI	CCNNGG	3 cut(s)	283, 507, 998
BseGI	GGATG	5 cut(s)	552, 714, 935, 993, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	8 cut(s)	28, 150, 342, 505, 740, 873, 878, 1132
BseRI	GAGGAG	1 cut(s)	826
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	3 cut(s)	230, 291, 1059
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	2 cut(s)	288, 779
BshNI	GGYRCC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	997
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	288, 779
BsoBI	CYCGRG	1 cut(s)	997
Bsp1286I	GDGCHC	3 cut(s)	399, 477, 863
Bsp143I	GATC	3 cut(s)	303, 346, 990
Bsp19I	CCATGG	1 cut(s)	283
Bsp68I	TCGCGA	1 cut(s)	798
BspACI	CCGC	5 cut(s)	254, 524, 898, 1067, 1077
BspANI	GGCC	2 cut(s)	288, 779
BspCNI	CTCAG	8 cut(s)	27, 149, 343, 504, 741, 874, 877, 1131
BspFNI	CGCG	1 cut(s)	798
BspHI	TCATGA	2 cut(s)	643, 670
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	528
BspPI	GGATC	2 cut(s)	341, 998
BspQI	GCTCTTC	2 cut(s)	761, 851
BspT107I	GGYRCC	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	283, 507, 998
BssMI	GATC	3 cut(s)	303, 346, 990
BssT1I	CCWWGG	2 cut(s)	283, 507
Bst2UI	CCWGG	2 cut(s)	55, 568
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	3 cut(s)	108, 761, 851
BstC8I	GCNNGC	4 cut(s)	153, 622, 639, 1077
BstDEI	CTNAG	9 cut(s)	14, 136, 351, 425, 491, 749, 864, 882, 1118
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	5 cut(s)	552, 714, 935, 993, 1177
BstFNI	CGCG	1 cut(s)	798
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 537
BstKTI	GATC	3 cut(s)	306, 349, 993
BstMBI	GATC	3 cut(s)	303, 346, 990
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 285, 685, 752, 1058
BstNI	CCWGG	2 cut(s)	55, 568
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	53, 566
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	3 cut(s)	230, 291, 1059
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	288, 779
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	552, 714, 935, 993, 1177
BtsIMutI	CAGTG	2 cut(s)	746, 872
BtuMI	TCGCGA	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	4 cut(s)	153, 622, 639, 1077
CciI	TCATGA	2 cut(s)	643, 670
CfoI	GCGC	2 cut(s)	13, 537
Cfr13I	GGNCC	3 cut(s)	57, 409, 777
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	5 cut(s)	186, 284, 621, 644, 671
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	9 cut(s)	14, 136, 351, 425, 491, 749, 864, 882, 1118
DpnI	GATC	3 cut(s)	305, 348, 992
DpnII	GATC	3 cut(s)	303, 346, 990
Eam1104I	CTCTTC	3 cut(s)	108, 761, 851
EarI	CTCTTC	3 cut(s)	108, 761, 851
Eco130I	CCWWGG	2 cut(s)	283, 507
Eco24I	GRGCYC	2 cut(s)	399, 863
Eco32I	GATATC	1 cut(s)	1115
Eco47I	GGWCC	2 cut(s)	57, 409
Eco57I	CTGAAG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	997
EcoRII	CCWGG	2 cut(s)	53, 566
EcoRV	GATATC	1 cut(s)	1115
EcoT14I	CCWWGG	2 cut(s)	283, 507
EcoT22I	ATGCAT	1 cut(s)	626
EcoT38I	GRGCYC	2 cut(s)	399, 863
ErhI	CCWWGG	2 cut(s)	283, 507
FaeI	CATG	5 cut(s)	189, 287, 624, 647, 674
FalI	AAGNNNNNCTT	4 cut(s)	1076, 1108, 1143, 1175
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	5 cut(s)	185, 283, 620, 643, 670
FauI	CCCGC	1 cut(s)	1084
FauNDI	CATATG	1 cut(s)	782
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	219, 280, 1073
FokI	GGATG	4 cut(s)	559, 721, 942, 980
FriOI	GRGCYC	2 cut(s)	399, 863
Fsp4HI	GCNGC	3 cut(s)	219, 280, 1073
FspBI	CTAG	2 cut(s)	222, 417
GlaI	GCGC	2 cut(s)	12, 536
GluI	GCNGC	3 cut(s)	219, 280, 1073
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	288, 779
HhaI	GCGC	2 cut(s)	13, 537
Hin1II	CATG	5 cut(s)	189, 287, 624, 647, 674
Hin6I	GCGC	2 cut(s)	11, 535
HinP1I	GCGC	2 cut(s)	11, 535
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	8 cut(s)	109, 257, 333, 463, 559, 787, 946, 1054
HphI	GGTGA	2 cut(s)	357, 928
Hpy166II	GTNNAC	2 cut(s)	409, 732
Hpy188I	TCNGA	7 cut(s)	17, 108, 139, 295, 468, 829, 883
Hpy188III	TCNNGA	7 cut(s)	350, 450, 493, 644, 671, 797, 997
Hpy8I	GTNNAC	2 cut(s)	409, 732
HpyAV	CCTTC	2 cut(s)	242, 1145
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	7 cut(s)	209, 238, 624, 664, 746, 938, 1168
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 285, 685, 752, 1058
HpyF3I	CTNAG	9 cut(s)	14, 136, 351, 425, 491, 749, 864, 882, 1118
Hsp92II	CATG	5 cut(s)	189, 287, 624, 647, 674
HspAI	GCGC	2 cut(s)	11, 535
KpnI	GGTACC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	303, 346, 990
LguI	GCTCTTC	2 cut(s)	761, 851
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	3 cut(s)	230, 291, 1059
LweI	GCATC	4 cut(s)	196, 567, 651, 947
MaeI	CTAG	2 cut(s)	222, 417
MaeIII	GTNAC	3 cut(s)	166, 321, 1105
MalI	GATC	3 cut(s)	305, 348, 992
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	3 cut(s)	303, 346, 990
MboII	GAAGA	9 cut(s)	42, 95, 215, 736, 778, 868, 898, 901, 1039
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	399, 477, 863
MluCI	AATT	5 cut(s)	30, 157, 484, 963, 1088
MlyI	GAGTC	3 cut(s)	251, 342, 1063
Mph1103I	ATGCAT	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	1088
MseI	TTAA	2 cut(s)	318, 432
MslI	CAYNNNNRTG	2 cut(s)	653, 669
MspR9I	CCNGG	2 cut(s)	55, 568
MvaI	CCWGG	2 cut(s)	55, 568
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	5 cut(s)	215, 285, 685, 752, 1058
NcoI	CCATGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	3 cut(s)	303, 346, 990
NlaIII	CATG	5 cut(s)	189, 287, 624, 647, 674
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	3 cut(s)	166, 321, 1105
NruI	TCGCGA	1 cut(s)	798
NsiI	ATGCAT	1 cut(s)	626
NspI	RCATGY	1 cut(s)	624
OliI	CACNNNNGTG	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	624
PagI	TCATGA	2 cut(s)	643, 670
PciSI	GCTCTTC	2 cut(s)	761, 851
PdmI	GAANNNNTTC	1 cut(s)	1088
PfeI	GAWTC	5 cut(s)	109, 463, 559, 787, 946
PfoI	TCCNGGA	2 cut(s)	53, 566
PkrI	GCNGC	3 cut(s)	220, 281, 1074
PleI	GAGTC	3 cut(s)	251, 341, 1062
PpsI	GAGTC	3 cut(s)	251, 341, 1062
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	53, 566
PspGI	CCWGG	2 cut(s)	53, 566
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	3 cut(s)	57, 409, 777
PsuI	RGATCY	1 cut(s)	303
RruI	TCGCGA	1 cut(s)	798
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	653, 669
SalI	GTCGAC	1 cut(s)	730
SapI	GCTCTTC	2 cut(s)	761, 851
SaqAI	TTAA	2 cut(s)	318, 432
SatI	GCNGC	3 cut(s)	219, 280, 1073
Sau3AI	GATC	3 cut(s)	303, 346, 990
Sau96I	GGNCC	3 cut(s)	57, 409, 777
SchI	GAGTC	3 cut(s)	251, 342, 1063
ScrFI	CCNGG	2 cut(s)	55, 568
SduI	GDGCHC	3 cut(s)	399, 477, 863
SfaNI	GCATC	4 cut(s)	196, 567, 651, 947
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	2 cut(s)	57, 409
SmiMI	CAYNNNNRTG	2 cut(s)	653, 669
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	5 cut(s)	30, 157, 484, 963, 1088
SsiI	CCGC	5 cut(s)	254, 524, 898, 1067, 1077
SspI	AATATT	2 cut(s)	97, 586
SspMI	CTAG	2 cut(s)	222, 417
StyD4I	CCNGG	2 cut(s)	53, 566
StyI	CCWWGG	2 cut(s)	283, 507
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	731, 790
TasI	AATT	5 cut(s)	30, 157, 484, 963, 1088
TfiI	GAWTC	5 cut(s)	109, 463, 559, 787, 946
Tru1I	TTAA	2 cut(s)	318, 432
Tru9I	TTAA	2 cut(s)	318, 432
TscAI	CASTG	2 cut(s)	753, 872
TseFI	GTSAC	3 cut(s)	166, 321, 1105
TseI	GCWGC	3 cut(s)	218, 279, 1072
Tsp45I	GTSAC	3 cut(s)	166, 321, 1105
TspDTI	ATGAA	3 cut(s)	1040, 1059, 1164
TspRI	CASTG	2 cut(s)	753, 872
VpaK11BI	GGWCC	2 cut(s)	57, 409
XceI	RCATGY	1 cut(s)	624
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	1088
XspI	CTAG	2 cut(s)	222, 417
Zsp2I	ATGCAT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.