FvH4_2g06241
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
5181428 .. 5183150
1723 bp
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UTR
Exon/CDS
Intron
FvH4_2g06241.t1

Sequence Viewer

Length: 1548 bp
ATGGCAGAGGGTACGCTTAACATTGAGGGTGGGGGTAAAAATTATGAAGCAAGGATCACTCTCTTTGTGATCTTCGCCTGCGTAGTGGCGGCCTCTGGCGGTCTCCTCTTCGGGTATGATATCGGAATCTCAGGAGGAGTGACTTCCATGGAACCATTCTTAAGCAAGTTCTTTCCATCCGTCGAGAAGAAGATGAAGAATGCCGGTGGCGGGAACATGTATTGCAAATTCGAAAGCCAGATCCTTACATTTTTCACTTCTTCCCTCTACATTGCAGCGTTCGTAGCTTCCTTCATTGCTTCATTCGTAACCAGGAAATTTGGTCGGAAACTCTCCATGTTTTTTGCTGGCTGTGTTTTCTTTCTAGGTGCTATCTTAAACGAAGCTGCCAGCACCCTTGTAGTCCTAATCCTTGGTCGTCTGTGTCTTGGTGTTGGTGTTGGATTTGCTAATCAGGTTGTCCCTATTTATTTAGCGGAGATGGCTCCAGCAAAGTTCAGAGGAGCACTCAACATTGGCTTCTCCATAGCTTACACCATTGGTATTCTAATGGCCAATCTTGTTAACTACGACACATCAAAGATGAAAAATGGACAAGGGTGGAGAGTTTCTCTAGCTCTTGCCGGCCTTCCGGCATTGAATATGATTATAGGCTCACTCTTTTTACCCGATAGTCCAAATTCCATCCTAGCAAGAGGTCGCCCAAATGAGGCCAAGAGAGTGTTGCGAAGAGTTCGTGGCACTGAAAATGTCGAGGAAGAGTTCCAGGACCTTATTCAAGCAAGTGAGGCTGCAAAGAAAGTGGAGCACCCATGGATAACCATCACTAAACCAAGATATAGGCCTCAACTTGTTATTTGCTGTCTCATACCATTTTTCCAGCAGCTTACTGGCATTAATGTTATCATGTTCTATGCACCAGTTCTTTTCAAGACTTTGGGTATGGGAGAAGACGCTTCTCTCATCTGCGCAATCATCACCGGTTTGGTTAATGTCATCGCTACTATCGTGTCGATTGTTACTGTTGATAGGCTTGGAAGAAGGGCATTGTTTCTTGAAGGCGGAGTGCAAATGATCGTGTGCCAAATTGGGATTGCAATTTTGGTAGGATTAAAGTTTGGAGTGAGCGGAGTAGGATCACTAACGAAAGGCGAAGCTAATATCCTTTTGTTCTTGGTATGTATATATGTCGCCGGCTTTGCATGGTCTTGGGGTCCGTTGGGATGGTTGGTGCCTAGTGAGATTTGTCCCTTAGAGATCCGATCAGCTGGACAAGCCATCAATGTATCTGTAAACATGTTCTTCACTTTTGTCATCGGGCAAGCTTTCCTCACCATGCTTTGCTCCATGAAGTTTGGAATATTCTACTTCTTTGCTGGCTTTGTTATTATCATGACCATCTTCGTCGCCTTCTTCATACCTGAAACCAAGAATGTCCCAATCGAAGAGATTAATACGGTTTGGAAAGCACACTGGTTTTGGGGCAAGTACATCCCAAATGATGCTATCATTGATGGTACACACGGCGAGGGCAAAGTTGATTTATAG

Protein Analysis

516

Amino Acids

56.1

Weight (kDa)

8.86

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 27 - 488 7.6e-127 Sugar (and other) transporter
MFS_1 PF07690 84 - 434 7.2e-23 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 970
AccB1I GGYRCC 1 cut(s) 1231
AccBSI CCGCTC 1 cut(s) 1128
AciI CCGC 6 cut(s) 89, 99, 210, 476, 1062, 1128
AclWI GGATC 4 cut(s) 62, 235, 1144, 1252
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 3 cut(s) 227, 317, 679
AfaI GTAC 3 cut(s) 13, 1490, 1519
AfiI CCNNNNNNNGG 2 cut(s) 210, 709
AflII CTTAAG 1 cut(s) 160
AflIII ACRYGT 2 cut(s) 216, 1296
AgeI ACCGGT 1 cut(s) 980
AgsI TTSAA 4 cut(s) 640, 779, 931, 1058
AjnI CCWGG 2 cut(s) 311, 765
AluBI AGCT 8 cut(s) 287, 386, 530, 617, 886, 1157, 1268, 1325
AluI AGCT 8 cut(s) 287, 386, 530, 617, 886, 1157, 1268, 1325
Alw21I GWGCWC 2 cut(s) 508, 810
Alw26I GTCTC 2 cut(s) 107, 869
AlwI GGATC 4 cut(s) 62, 235, 1144, 1252
AoxI GGCC 5 cut(s) 90, 552, 625, 711, 842
ApeKI GCWGC 4 cut(s) 275, 386, 791, 883
ApoI RAATTY 3 cut(s) 227, 317, 679
AseI ATTAAT 2 cut(s) 897, 1452
AsiGI ACCGGT 1 cut(s) 980
AspLEI GCGC 1 cut(s) 971
AspS9I GGNCC 2 cut(s) 769, 1214
AsuHPI GGTGA 2 cut(s) 970, 1324
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 2 cut(s) 769, 1214
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 1231
BbsI GAAGAC 1 cut(s) 957
Bbv12I GWGCWC 2 cut(s) 508, 810
BbvI GCAGC 4 cut(s) 287, 373, 778, 895
BccI CCATC 8 cut(s) 184, 475, 692, 830, 1218, 1286, 1406, 1508
BceAI ACGGC 1 cut(s) 1540
BciT130I CCWGG 2 cut(s) 313, 767
BcoDI GTCTC 2 cut(s) 107, 869
BfaI CTAG 4 cut(s) 365, 614, 689, 1236
BfrI CTTAAG 1 cut(s) 160
BisI GCNGC 5 cut(s) 90, 276, 387, 792, 884
BlsI GCNGC 5 cut(s) 91, 277, 388, 793, 885
Bme1390I CCNGG 2 cut(s) 313, 767
Bme18I GGWCC 2 cut(s) 769, 1214
BmgT120I GGNCC 2 cut(s) 769, 1214
BmiI GGNNCC 4 cut(s) 153, 486, 1215, 1233
BmrFI CCNGG 2 cut(s) 313, 767
BmsI GCATC 1 cut(s) 1492
BpiI GAAGAC 1 cut(s) 957
BplI GAGNNNNNCTC 4 cut(s) 492, 524, 595, 627
BpmI CTGGAG 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 147, 412, 812
BsaWI WCCGGW 1 cut(s) 980
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 709
Bse118I RCCGGY 4 cut(s) 203, 623, 980, 1193
Bse1I ACTGG 3 cut(s) 895, 920, 1478
Bse3DI GCAATG 2 cut(s) 270, 294
Bse8I GATNNNNATC 1 cut(s) 821
BseBI CCWGG 2 cut(s) 313, 767
BseDI CCNNGG 3 cut(s) 147, 412, 812
BseGI GGATG 4 cut(s) 176, 684, 1229, 1491
BseJI GATNNNNATC 1 cut(s) 821
BseLI CCNNNNNNNGG 2 cut(s) 210, 709
BseMI GCAATG 2 cut(s) 270, 294
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 3 cut(s) 895, 920, 1478
BseRI GAGGAG 3 cut(s) 95, 150, 516
BseXI GCAGC 4 cut(s) 287, 373, 778, 895
BshFI GGCC 5 cut(s) 92, 554, 627, 713, 844
BshNI GGYRCC 1 cut(s) 1231
BshTI ACCGGT 1 cut(s) 980
BsiHKAI GWGCWC 2 cut(s) 508, 810
BsiSI CCGG 5 cut(s) 204, 624, 632, 981, 1194
BslFI GGGAC 3 cut(s) 446, 1233, 1421
BslI CCNNNNNNNGG 2 cut(s) 210, 709
BsmAI GTCTC 2 cut(s) 107, 869
BsmFI GGGAC 3 cut(s) 446, 1233, 1421
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 5 cut(s) 92, 554, 627, 713, 844
Bso31I GGTCTC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 508, 810
Bsp143I GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
Bsp19I CCATGG 2 cut(s) 147, 812
BspACI CCGC 6 cut(s) 89, 99, 210, 476, 1062, 1128
BspANI GGCC 5 cut(s) 92, 554, 627, 713, 844
BspCNI CTCAG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 1392
BspLI GGNNCC 4 cut(s) 153, 486, 1215, 1233
BspPI GGATC 4 cut(s) 62, 235, 1144, 1252
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 1231
BspTI CTTAAG 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 1128
BsrDI GCAATG 2 cut(s) 270, 294
BsrFI RCCGGY 4 cut(s) 203, 623, 980, 1193
BsrI ACTGG 3 cut(s) 895, 920, 1478
BssAI RCCGGY 4 cut(s) 203, 623, 980, 1193
BssECI CCNNGG 3 cut(s) 147, 412, 812
BssMI GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
BssT1I CCWWGG 3 cut(s) 147, 412, 812
Bst2UI CCWGG 2 cut(s) 313, 767
Bst4CI ACNGT 2 cut(s) 1024, 1459
Bst6I CTCTTC 4 cut(s) 113, 724, 753, 1440
BstAFI CTTAAG 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 7 cut(s) 79, 349, 391, 625, 1195, 1323, 1378
BstDEI CTNAG 2 cut(s) 130, 1252
BstDSI CCRYGG 2 cut(s) 147, 812
BstF5I GGATG 4 cut(s) 176, 684, 1229, 1491
BstHHI GCGC 1 cut(s) 971
BstKTI GATC 7 cut(s) 57, 72, 243, 1077, 1139, 1260, 1265
BstMAI GTCTC 2 cut(s) 107, 869
BstMBI GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
BstMWI GCNNNNNNNGC 5 cut(s) 284, 482, 788, 1199, 1274
BstNI CCWGG 2 cut(s) 313, 767
BstNSI RCATGY 2 cut(s) 220, 1300
BstSCI CCNGG 2 cut(s) 311, 765
BstV1I GCAGC 4 cut(s) 287, 373, 778, 895
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 2 cut(s) 240, 1257
BstYI RGATCY 2 cut(s) 240, 1257
BsuRI GGCC 5 cut(s) 92, 554, 627, 713, 844
BtgI CCRYGG 2 cut(s) 147, 812
BtgZI GCGATG 1 cut(s) 982
BtsCI GGATG 4 cut(s) 176, 684, 1229, 1491
BtsIMutI CAGTG 2 cut(s) 741, 1471
Cac8I GCNNGC 7 cut(s) 79, 349, 391, 625, 1195, 1323, 1378
CciI TCATGA 1 cut(s) 1392
CfoI GCGC 1 cut(s) 971
Cfr10I RCCGGY 4 cut(s) 203, 623, 980, 1193
Cfr13I GGNCC 2 cut(s) 769, 1214
CseI GACGC 1 cut(s) 962
Csp6I GTAC 3 cut(s) 12, 1489, 1518
CspAI ACCGGT 1 cut(s) 980
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviQI GTAC 3 cut(s) 12, 1489, 1518
DdeI CTNAG 2 cut(s) 130, 1252
DpnI GATC 7 cut(s) 56, 71, 242, 1076, 1138, 1259, 1264
DpnII GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 4 cut(s) 113, 724, 753, 1440
EarI CTCTTC 4 cut(s) 113, 724, 753, 1440
EciI GGCGGA 1 cut(s) 1077
Eco130I CCWWGG 3 cut(s) 147, 412, 812
Eco147I AGGCCT 1 cut(s) 844
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 769, 1214
EcoO109I RGGNCCY 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 311, 765
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 147, 412, 812
ErhI CCWWGG 3 cut(s) 147, 412, 812
FaqI GGGAC 3 cut(s) 446, 1233, 1421
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 5 cut(s) 90, 276, 387, 792, 884
FokI GGATG 4 cut(s) 163, 671, 1236, 1478
Fsp4HI GCNGC 5 cut(s) 90, 276, 387, 792, 884
FspBI CTAG 4 cut(s) 365, 614, 689, 1236
FspI TGCGCA 1 cut(s) 970
GlaI GCGC 1 cut(s) 970
GluI GCNGC 5 cut(s) 90, 276, 387, 792, 884
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 5 cut(s) 92, 554, 627, 713, 844
HapII CCGG 5 cut(s) 204, 624, 632, 981, 1194
HgaI GACGC 1 cut(s) 962
HhaI GCGC 1 cut(s) 971
Hin6I GCGC 1 cut(s) 969
HinP1I GCGC 1 cut(s) 969
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 1 cut(s) 126
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 5 cut(s) 204, 624, 632, 981, 1194
HphI GGTGA 2 cut(s) 970, 1324
Hpy166II GTNNAC 3 cut(s) 565, 1294, 1520
Hpy188I TCNGA 4 cut(s) 125, 327, 500, 1262
Hpy188III TCNNGA 5 cut(s) 132, 184, 931, 1055, 1393
Hpy8I GTNNAC 3 cut(s) 565, 1294, 1520
Hpy99I CGWCG 2 cut(s) 185, 1409
HpyAV CCTTC 5 cut(s) 301, 638, 1035, 1052, 1420
HpyCH4III ACNGT 2 cut(s) 1024, 1459
HpyCH4V TGCA 7 cut(s) 225, 275, 794, 917, 1069, 1097, 1202
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 482, 788, 1199, 1274
HpyF3I CTNAG 2 cut(s) 130, 1252
HspAI GCGC 1 cut(s) 969
KroI GCCGGC 2 cut(s) 623, 1193
KroNI GCCGGC 2 cut(s) 625, 1195
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
LmnI GCTCC 4 cut(s) 490, 503, 805, 1349
Lsp1109I GCAGC 4 cut(s) 287, 373, 778, 895
LweI GCATC 1 cut(s) 1492
MaeI CTAG 4 cut(s) 365, 614, 689, 1236
MaeIII GTNAC 3 cut(s) 139, 307, 1018
MalI GATC 7 cut(s) 56, 71, 242, 1076, 1138, 1259, 1264
MbiI CCGCTC 1 cut(s) 1128
MboI GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
MflI RGATCY 2 cut(s) 240, 1257
MhlI GDGCHC 2 cut(s) 508, 810
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 6 cut(s) 40, 227, 317, 679, 1086, 1098
MluNI TGGCCA 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 305, 421
Mox20I TGGCCA 1 cut(s) 554
MroNI GCCGGC 2 cut(s) 623, 1193
MscI TGGCCA 1 cut(s) 554
MseI TTAA 8 cut(s) 18, 161, 377, 564, 897, 990, 1112, 1452
Msp20I TGGCCA 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 1268
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 5 cut(s) 204, 624, 632, 981, 1194
MspR9I CCNGG 2 cut(s) 313, 767
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 2 cut(s) 313, 767
MwoI GCNNNNNNNGC 5 cut(s) 284, 482, 788, 1199, 1274
NaeI GCCGGC 2 cut(s) 625, 1195
NcoI CCATGG 2 cut(s) 147, 812
NdeII GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
NgoMIV GCCGGC 2 cut(s) 623, 1193
NlaIV GGNNCC 4 cut(s) 153, 486, 1215, 1233
NmuCI GTSAC 1 cut(s) 139
NsbI TGCGCA 1 cut(s) 970
NspI RCATGY 2 cut(s) 220, 1300
NspV TTCGAA 1 cut(s) 231
PagI TCATGA 1 cut(s) 1392
PceI AGGCCT 1 cut(s) 844
PciI ACATGT 2 cut(s) 216, 1296
PcsI WCGNNNNNNNCGW 1 cut(s) 1005
PctI GAATGC 1 cut(s) 205
PdiI GCCGGC 2 cut(s) 625, 1195
PfeI GAWTC 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 765
PinAI ACCGGT 1 cut(s) 980
PkrI GCNGC 5 cut(s) 91, 277, 388, 793, 885
PpuMI RGGWCCY 1 cut(s) 769
PscI ACATGT 2 cut(s) 216, 1296
PshBI ATTAAT 2 cut(s) 897, 1452
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 311, 765
PspGI CCWGG 2 cut(s) 311, 765
PspN4I GGNNCC 4 cut(s) 153, 486, 1215, 1233
PspPI GGNCC 2 cut(s) 769, 1214
PspPPI RGGWCCY 1 cut(s) 769
PsuI RGATCY 2 cut(s) 240, 1257
PvuII CAGCTG 1 cut(s) 1268
RsaI GTAC 3 cut(s) 13, 1490, 1519
RsaNI GTAC 3 cut(s) 12, 1489, 1518
SaqAI TTAA 8 cut(s) 18, 161, 377, 564, 897, 990, 1112, 1452
SatI GCNGC 5 cut(s) 90, 276, 387, 792, 884
Sau3AI GATC 7 cut(s) 54, 69, 240, 1074, 1136, 1257, 1262
Sau96I GGNCC 2 cut(s) 769, 1214
ScrFI CCNGG 2 cut(s) 313, 767
SduI GDGCHC 2 cut(s) 508, 810
SfaNI GCATC 1 cut(s) 1492
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 2 cut(s) 769, 1214
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 6 cut(s) 40, 227, 317, 679, 1086, 1098
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 6 cut(s) 89, 99, 210, 476, 1062, 1128
SspI AATATT 1 cut(s) 1362
SspMI CTAG 4 cut(s) 365, 614, 689, 1236
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 2 cut(s) 311, 765
StyI CCWWGG 3 cut(s) 147, 412, 812
TaaI ACNGT 2 cut(s) 1024, 1459
TaqI TCGA 5 cut(s) 183, 231, 753, 1013, 1443
TasI AATT 6 cut(s) 40, 227, 317, 679, 1086, 1098
TatI WGTACW 1 cut(s) 1488
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 8 cut(s) 18, 161, 377, 564, 897, 990, 1112, 1452
Tru9I TTAA 8 cut(s) 18, 161, 377, 564, 897, 990, 1112, 1452
TscAI CASTG 2 cut(s) 748, 1478
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 275, 386, 791, 883
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 7 cut(s) 60, 209, 283, 291, 599, 1364, 1405
TspGWI ACGGA 2 cut(s) 169, 1206
TspRI CASTG 2 cut(s) 748, 1478
Vha464I CTTAAG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 769, 1214
VspI ATTAAT 2 cut(s) 897, 1452
XapI RAATTY 3 cut(s) 227, 317, 679
XceI RCATGY 2 cut(s) 220, 1300
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XspI CTAG 4 cut(s) 365, 614, 689, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.