Rw6G008130
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
13799876 .. 13801705
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008130.1

Sequence Viewer

Length: 1512 bp
ATGGCAGGAGGTGGGTTTAGTATTGAGGATGGAGCTAAGAACTATGGAGGAAGAGTCACCCTATTTGTAGTCTTCGCCTGTATAGTGGCTGCCTCGGGAGGAGTGACTTCGATGGACACATTCTTGATCAAATTCTTCCCAGAAGTGATGAAGAAAATGAAGAATGAGTCTGGTGATGGAAATAATATGTATTGCAAATTTGAGAGCCAAATCCTAACATTGTTCACCTCTTCCCTCTACCTTTCAGCGTTGGTTGCTTCCATCTTTGCTTCGAAAGTAACCAAAAGATTTGGTCGAAAAATCTCCATGTTTGTGGCAGGCGTTGTTTTTCTTCTAGGTGCTATCCTAAATGGTATTGCCAACAACATTGTACTTCTAATCATAGGTCGTCTATTACTTGGTGTTGGTGTTGGTTTTGCTAATCAGGCTATTCCTGTTTATCTATCCGAAATGGCTCCGGCAAAAATTAGAGGAGCACTTAACATTGGCTTCTCAATGGCTATTACCCTTGGTATTCTAGTGGCCAATCTTGTGAACTACGGCACTTCTAAGATCAAAGGTGGATATGGGTGGAGAGTTTCTTTGGCTCTTGCTGGTGTCCCCGCGTTGATGATGATTGTAGGCGCAATCTTTTTACCCGATACTCCAAATTCAATCCTAGAGAGAGGCCACCCTGAGAAGGCCAAAAAAATGTTACAAAAGATTCGTGGCACTGAAAACGTTGACGAGGAGTTCCTAGACCTTATTGATGCAAGTGAGGCTTCAAAGAAAGTGGAGCATGCATGGAAGAACATCACACAACCGAGATATAGGCCCCAACTTGTCATTTGCTGTCTCATTCCATTCTTCCAGCAGCTTACCGGCATCAATGTGATCATGTTTTATGCACCAGTTCTTTTTAAGACTTTAGGCATGGGAGATGATGCTTCCCTCGTCTCTGCTGTTATCACCGGCTGTGTCAATGTCATCGCTACCTTTATCTCAGTAATGACCGTTGATAGGTTTGGAAGACGGGTATTGTTCCTTGAAGGTGGTGTGCAAATGATCCTTTGTCGGATTGGTGTTGCAGTCATAATTGGGTTGAAGTATGGTGTGAGTGGAGTAGGATCATTGACAAAAGGCGAAGCTGATATCGTTCTCGTCTTTATCTGCATATACGTCGCCGGTTTTGCATGGTCTTGGGGAGCACTGGGGTGGTTGGTGCCTAGTGAGATCTGTCCTCTAGAGATACGATCGGCTGGACAAGCCATCAACGTTTCCGTTAACATGCTATTCACTTTTATCATTGCCCAATGTTTTCTCTCCATGCTTTGCCACATGAAGTTTGGTCTCTTCATCTTCTTTGCTGCCTTCGTCACTATTATGTCCATTTTCATTGCCCTCTTCATGCCTGAGACGAAGAGTGTTCCCATTGAAGAGATTAATACAGTGTGGAAAGCACATTGGTTTTGGGGCAAGTACATCCCCGATGATGCTGTTATTGATGGTACGCACGGGAGGGCTGTAGTATGA

Protein Analysis

503

Amino Acids

54.6

Weight (kDa)

8.97

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 27 - 478 6.4e-122 Sugar (and other) transporter
MFS_1 PF07690 72 - 428 2.1e-27 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1201
AccII CGCG 1 cut(s) 605
AciI CCGC 1 cut(s) 603
AclI AACGTT 2 cut(s) 720, 1254
AclWI GGATC 2 cut(s) 1039, 1114
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 3 cut(s) 131, 197, 649
AfaI GTAC 3 cut(s) 372, 1460, 1489
AfiI CCNNNNNNNGG 2 cut(s) 679, 999
AgsI TTSAA 5 cut(s) 654, 765, 1028, 1084, 1415
AleI CACNNNNGTG 1 cut(s) 1192
AluBI AGCT 3 cut(s) 35, 856, 1127
AluI AGCT 3 cut(s) 35, 856, 1127
Alw21I GWGCWC 2 cut(s) 478, 1189
Alw26I GTCTC 4 cut(s) 839, 940, 1334, 1388
AlwI GGATC 2 cut(s) 1039, 1114
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 4 cut(s) 522, 667, 681, 812
ApeKI GCWGC 3 cut(s) 89, 853, 1346
ApoI RAATTY 3 cut(s) 131, 197, 649
AseI ATTAAT 1 cut(s) 1422
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 813
AsuHPI GGTGA 4 cut(s) 49, 185, 217, 940
AsuII TTCGAA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 94
BalI TGGCCA 1 cut(s) 524
BanI GGYRCC 1 cut(s) 1201
BbsI GAAGAC 2 cut(s) 64, 1015
Bbv12I GWGCWC 2 cut(s) 478, 1189
BbvI GCAGC 3 cut(s) 76, 865, 1333
BccI CCATC 6 cut(s) 23, 106, 170, 269, 1256, 1478
BceAI ACGGC 1 cut(s) 556
BcgI CGANNNNNNTGC 2 cut(s) 1141, 1175
BclI TGATCA 2 cut(s) 126, 873
BcoDI GTCTC 4 cut(s) 839, 940, 1334, 1388
BfaI CTAG 6 cut(s) 335, 518, 659, 737, 1206, 1223
BfmI CTRYAG 1 cut(s) 1503
BglII AGATCT 1 cut(s) 1212
BisI GCNGC 3 cut(s) 90, 854, 1347
BlsI GCNGC 3 cut(s) 91, 855, 1348
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 813
BmiI GGNNCC 3 cut(s) 456, 815, 1203
BmrI ACTGGG 1 cut(s) 1199
BmsI GCATC 4 cut(s) 739, 873, 913, 1462
BmuI ACTGGG 1 cut(s) 1199
BpiI GAAGAC 2 cut(s) 64, 1015
Bpu14I TTCGAA 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 1334
BsaJI CCNNGG 2 cut(s) 93, 508
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 679, 999
Bse118I RCCGGY 3 cut(s) 860, 950, 1163
Bse1I ACTGG 2 cut(s) 890, 1194
Bse3DI GCAATG 2 cut(s) 1284, 1374
BseDI CCNNGG 2 cut(s) 93, 508
BseGI GGATG 2 cut(s) 34, 1461
BseLI CCNNNNNNNGG 2 cut(s) 679, 999
BseMI GCAATG 2 cut(s) 1284, 1374
BseMII CTCAG 3 cut(s) 666, 996, 1383
BseNI ACTGG 2 cut(s) 890, 1194
BseRI GAGGAG 3 cut(s) 114, 486, 743
BseXI GCAGC 3 cut(s) 76, 865, 1333
Bsh1236I CGCG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 1235
BshFI GGCC 4 cut(s) 524, 669, 683, 814
BshNI GGYRCC 1 cut(s) 1201
BsiEI CGRYCG 1 cut(s) 1235
BsiHKAI GWGCWC 2 cut(s) 478, 1189
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 4 cut(s) 458, 861, 951, 1164
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 2 cut(s) 679, 999
BsmAI GTCTC 4 cut(s) 839, 940, 1334, 1388
BsmBI CGTCTC 2 cut(s) 940, 1388
BsmFI GGGAC 1 cut(s) 584
BsnI GGCC 4 cut(s) 524, 669, 683, 814
Bso31I GGTCTC 1 cut(s) 1334
BsoBI CYCGRG 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 478, 1189
Bsp143I GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
BspACI CCGC 1 cut(s) 603
BspANI GGCC 4 cut(s) 524, 669, 683, 814
BspCNI CTCAG 3 cut(s) 667, 995, 1384
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 3 cut(s) 456, 815, 1203
BspPI GGATC 2 cut(s) 1039, 1114
BspT104I TTCGAA 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 1201
BspTNI GGTCTC 1 cut(s) 1334
BsrDI GCAATG 2 cut(s) 1284, 1374
BsrFI RCCGGY 3 cut(s) 860, 950, 1163
BsrI ACTGG 2 cut(s) 890, 1194
BssAI RCCGGY 3 cut(s) 860, 950, 1163
BssECI CCNNGG 2 cut(s) 93, 508
BssMI GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 994, 1429
Bst6I CTCTTC 6 cut(s) 46, 235, 1337, 1388, 1394, 1410
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 319, 780
BstDEI CTNAG 5 cut(s) 36, 549, 675, 982, 1392
BstF5I GGATG 2 cut(s) 34, 1461
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 7 cut(s) 129, 555, 876, 1047, 1109, 1215, 1235
BstMAI GTCTC 4 cut(s) 839, 940, 1334, 1388
BstMBI GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
BstMCI CGRYCG 1 cut(s) 1235
BstMWI GCNNNNNNNGC 5 cut(s) 254, 425, 758, 1169, 1244
BstNSI RCATGY 2 cut(s) 782, 1270
BstSFI CTRYAG 1 cut(s) 1503
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 76, 865, 1333
BstV2I GAAGAC 2 cut(s) 64, 1015
BstX2I RGATCY 1 cut(s) 1212
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 1 cut(s) 1212
BsuRI GGCC 4 cut(s) 524, 669, 683, 814
BtgZI GCGATG 1 cut(s) 952
BtsCI GGATG 2 cut(s) 34, 1461
BtsIMutI CAGTG 3 cut(s) 711, 1187, 1434
Cac8I GCNNGC 2 cut(s) 319, 780
CfoI GCGC 1 cut(s) 626
Cfr10I RCCGGY 3 cut(s) 860, 950, 1163
Cfr13I GGNCC 1 cut(s) 813
Csp6I GTAC 3 cut(s) 371, 1459, 1488
CspCI CAANNNNNGTGG 2 cut(s) 753, 788
CviQI GTAC 3 cut(s) 371, 1459, 1488
DdeI CTNAG 5 cut(s) 36, 549, 675, 982, 1392
DpnI GATC 7 cut(s) 128, 554, 875, 1046, 1108, 1214, 1234
DpnII GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 6 cut(s) 46, 235, 1337, 1388, 1394, 1410
EarI CTCTTC 6 cut(s) 46, 235, 1337, 1388, 1394, 1410
Eco130I CCWWGG 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 1334
Eco32I GATATC 1 cut(s) 1132
Eco88I CYCGRG 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 813
EcoRV GATATC 1 cut(s) 1132
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 2 cut(s) 940, 1388
FalI AAGNNNNNCTT 2 cut(s) 745, 777
FaqI GGGAC 1 cut(s) 584
FauI CCCGC 1 cut(s) 610
FbaI TGATCA 2 cut(s) 126, 873
Fnu4HI GCNGC 3 cut(s) 90, 854, 1347
FokI GGATG 2 cut(s) 41, 1448
Fsp4HI GCNGC 3 cut(s) 90, 854, 1347
FspBI CTAG 6 cut(s) 335, 518, 659, 737, 1206, 1223
GlaI GCGC 1 cut(s) 625
GluI GCNGC 3 cut(s) 90, 854, 1347
HaeIII GGCC 4 cut(s) 524, 669, 683, 814
HapII CCGG 4 cut(s) 458, 861, 951, 1164
HhaI GCGC 1 cut(s) 626
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HincII GTYRAC 2 cut(s) 724, 1264
HindII GTYRAC 2 cut(s) 724, 1264
HinfI GANTC 3 cut(s) 54, 167, 703
HpaI GTTAAC 1 cut(s) 1264
HpaII CCGG 4 cut(s) 458, 861, 951, 1164
HphI GGTGA 4 cut(s) 49, 185, 217, 940
Hpy166II GTNNAC 4 cut(s) 225, 535, 724, 1264
Hpy188I TCNGA 2 cut(s) 448, 1056
Hpy188III TCNNGA 3 cut(s) 96, 124, 1223
Hpy8I GTNNAC 4 cut(s) 225, 535, 724, 1264
Hpy99I CGWCG 1 cut(s) 1163
HpyAV CCTTC 3 cut(s) 673, 1022, 1360
HpyCH4III ACNGT 2 cut(s) 994, 1429
HpyCH4IV ACGT 3 cut(s) 720, 1158, 1254
HpyCH4V TGCA 8 cut(s) 195, 752, 782, 887, 1039, 1067, 1152, 1172
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 425, 758, 1169, 1244
HpyF3I CTNAG 5 cut(s) 36, 549, 675, 982, 1392
HpySE526I ACGT 3 cut(s) 720, 1158, 1254
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 2 cut(s) 126, 873
KspAI GTTAAC 1 cut(s) 1264
Kzo9I GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
LmnI GCTCC 5 cut(s) 32, 460, 473, 775, 1184
Lsp1109I GCAGC 3 cut(s) 76, 865, 1333
LweI GCATC 4 cut(s) 739, 873, 913, 1462
MaeI CTAG 6 cut(s) 335, 518, 659, 737, 1206, 1223
MaeII ACGT 3 cut(s) 720, 1158, 1254
MaeIII GTNAC 5 cut(s) 55, 103, 277, 693, 1354
MalI GATC 7 cut(s) 128, 554, 875, 1046, 1108, 1214, 1234
MboI GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
MflI RGATCY 1 cut(s) 1212
MhlI GDGCHC 2 cut(s) 478, 1189
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 5 cut(s) 131, 197, 465, 649, 1074
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 2 cut(s) 63, 176
MmeI TCCRAC 1 cut(s) 1034
Mox20I TGGCCA 1 cut(s) 524
Mph1103I ATGCAT 1 cut(s) 784
MscI TGGCCA 1 cut(s) 524
MseI TTAA 4 cut(s) 480, 900, 1263, 1422
MslI CAYNNNNRTG 4 cut(s) 311, 869, 1192, 1361
Msp20I TGGCCA 1 cut(s) 524
MspI CCGG 4 cut(s) 458, 861, 951, 1164
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 5 cut(s) 254, 425, 758, 1169, 1244
NdeII GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
NlaIV GGNNCC 3 cut(s) 456, 815, 1203
NmuCI GTSAC 3 cut(s) 55, 103, 1354
NsiI ATGCAT 1 cut(s) 784
NspI RCATGY 2 cut(s) 782, 1270
NspV TTCGAA 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 1192
PaeI GCATGC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 703
PkrI GCNGC 3 cut(s) 91, 855, 1348
Ple19I CGATCG 1 cut(s) 1235
PleI GAGTC 2 cut(s) 62, 175
PpsI GAGTC 2 cut(s) 62, 175
PshBI ATTAAT 1 cut(s) 1422
Psp1406I AACGTT 2 cut(s) 720, 1254
PspN4I GGNNCC 3 cut(s) 456, 815, 1203
PspPI GGNCC 1 cut(s) 813
PsuI RGATCY 1 cut(s) 1212
PvuI CGATCG 1 cut(s) 1235
RsaI GTAC 3 cut(s) 372, 1460, 1489
RsaNI GTAC 3 cut(s) 371, 1459, 1488
RseI CAYNNNNRTG 4 cut(s) 311, 869, 1192, 1361
SaqAI TTAA 4 cut(s) 480, 900, 1263, 1422
SatI GCNGC 3 cut(s) 90, 854, 1347
Sau3AI GATC 7 cut(s) 126, 552, 873, 1044, 1106, 1212, 1232
Sau96I GGNCC 1 cut(s) 813
SchI GAGTC 2 cut(s) 63, 176
SduI GDGCHC 2 cut(s) 478, 1189
SfaNI GCATC 4 cut(s) 739, 873, 913, 1462
SfcI CTRYAG 1 cut(s) 1503
SfuI TTCGAA 1 cut(s) 272
SmiMI CAYNNNNRTG 4 cut(s) 311, 869, 1192, 1361
SphI GCATGC 1 cut(s) 782
Sse9I AATT 5 cut(s) 131, 197, 465, 649, 1074
SsiI CCGC 1 cut(s) 603
SspMI CTAG 6 cut(s) 335, 518, 659, 737, 1206, 1223
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 994, 1429
TaiI ACGT 3 cut(s) 723, 1161, 1257
TaqI TCGA 3 cut(s) 110, 272, 295
TasI AATT 5 cut(s) 131, 197, 465, 649, 1074
TatI WGTACW 2 cut(s) 370, 1458
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 4 cut(s) 480, 900, 1263, 1422
Tru9I TTAA 4 cut(s) 480, 900, 1263, 1422
TscAI CASTG 3 cut(s) 718, 1194, 1434
TseFI GTSAC 3 cut(s) 55, 103, 1354
TseI GCWGC 3 cut(s) 89, 853, 1346
Tsp45I GTSAC 3 cut(s) 55, 103, 1354
TspDTI ATGAA 6 cut(s) 164, 173, 1324, 1334, 1363, 1375
TspGWI ACGGA 1 cut(s) 1249
TspRI CASTG 3 cut(s) 718, 1194, 1434
VspI ATTAAT 1 cut(s) 1422
XapI RAATTY 3 cut(s) 131, 197, 649
XbaI TCTAGA 1 cut(s) 1222
XceI RCATGY 2 cut(s) 782, 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 1322
XspI CTAG 6 cut(s) 335, 518, 659, 737, 1206, 1223
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.