Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002419

Physical Location & Seq

Genomic Coordinates Forward (+)

5177597 .. 5180040

Gene Structure 2444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAAGAGAAGCTAAATATTCAAGTGAAAAGGCTTCTTTATTTACAACAATTTGGATTAACATTGCAGGCTGTCCCAGTTTATCTATCGGAGATGGCTCCAGCAAAGTTTAGAGGAGCACTTAACATTGGCTTCTCAATAGCTTGCACTATTGGTATCTTAGTGGCCAATCTTGTTAACTACGGCACATCAAAGATAAAGAGTGGACAAGGTTGGAGAGTTTCTCTAGCTCTTGCAGGGGTTCCAGCTTTGATGTTGATTATAGGCTCACTCTTTTTGCCCGATACTCCGAATTCCATCCTAGCAAGAGGTCACTTGAAGGAGGCCAAGAAAGTATTGCAAAAGGTTCGCGGCACTGAAAATGTCGAGGAAGAGTTCCAAGACCTTATTCAAGCAAGTGAGGCTGCAAAGAAAGTAGAGAACCCATGGACAAACATCATTCAACCGAGATATAGGCCTCAACTTGTTATTTGTTGTCTCATTCCATTATTCCAGCAGCTTACGGGAATCAATGCGATCATGTTCTATGCACCAGTTCTTTTCAAGACATTGGGTATGGGAAATGACGCTTCCCTCATCTCTGCAATCATAACTGGTTCTGTTAATGTTGTTTCTACTATCGTGTCGATTGTTACAGTCGATAGGCTTGGAAGAAGGGCATTGTTTCTTGAAGGCGGAGTGCAAATGATCGTGTGTCAAATTGCAGTAGCAATCCTGATAGGTTTAAAGTTTGGAGTGAGCGGAGTAGGATCACTTACGAAAGGCGAAGCTGATTTCCTTTTGTTTTTGGTATGTATATATGTCGCGGGCTTTGCATGGTCTTGGGGTCCGTTGGGATGGTTGGTGCCTAGTGAGATTTGTCCCTTGGAGATCCGATCAGCTGGACAAGCCATCAATGTGTCGATTAACATGTTATTCACTTTTGTCATTGGGCAAGCTTTCCTCACCATGCTTTGCTCCATGAAGTTTGGGTTGTTCTTCTTCTTTGCTGGCTTTGTTATTATCATGACCATCTTTGTTGCATTCTTCATACCTGAAACCAAGAATGTCCCAATCGAAGAGATTAACACGGTGTGGAAAGCACACTGGTTTTGGGGCAAGTACATTCCAGATGACGCTATCAATGACGGTACAGACAACAAGGGTAGAGTTGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

387

Amino Acids

42.39

Weight (kDa)

8.89

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	18 - 359	1.8e-100	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50310 AT1G50310 AT3G19940 AT5G23270
fragaria_vesca	FvH4_2g06240 FvH4_2g06241 FvH4_2g06250
malus_domestica	MD00G1119600.v1.1 MD13G1238600.v1.1 MD13G1238700.v1.1 MD15G1433200.v1.1 MD16G1243500.v1.1
prunus_persica	Prupe.1G070800_v2.0.a1 Prupe.1G070900_v2.0.a1
pyrus_communis	pycom13g21110 pycom13g21120
rosa_chinensis	RchiOBHm_Chr4g0398701 RchiOBHm_Chr6g0256931 RchiOBHm_Chr6g0256941
rosa_laevigata	RLG00000009330 RLG00000014660 RLG00000014663
rosa_multiflora	Rmu_sc0000659.1_g000045 Rmu_sc0008600.1_g000002 Rmu_sc0017404.1_g000011
rosa_roxburghii	Rroxscaffold_5G00343660 Rroxscaffold_7G00208330 Rroxscaffold_7G00208350
rosa_rugosa	Rorug04G0010900 Rorug05G0576400 Rorug05G0576500 Rorug05G0576600
rosa_samantha	Rh4DG080100 Rh6AG095000 Rh6BG086100 Rh6BG086200 Rh6CG082200 Rh6DG077900
rosa_wichuraiana	Rw4G007340 Rw6G008110 Rw6G008130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	844
AccBSI	CCGCTC	1 cut(s)	741
AccII	CGCG	2 cut(s)	351, 806
AciI	CCGC	4 cut(s)	351, 675, 741, 806
AclWI	GGATC	2 cut(s)	757, 865
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	1074
AfaI	GTAC	2 cut(s)	1103, 1132
AflIII	ACRYGT	1 cut(s)	909
AgsI	TTSAA	6 cut(s)	23, 319, 392, 443, 544, 671
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	8 cut(s)	13, 143, 230, 248, 499, 770, 881, 938
AluI	AGCT	8 cut(s)	13, 143, 230, 248, 499, 770, 881, 938
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	757, 865
AoxI	GGCC	3 cut(s)	165, 324, 455
ApeKI	GCWGC	2 cut(s)	404, 496
ApoI	RAATTY	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	827
AsuHPI	GGTGA	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	827
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	844
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	391, 508
BccI	CCATC	5 cut(s)	88, 305, 831, 899, 1019
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	3 cut(s)	227, 302, 849
BisI	GCNGC	3 cut(s)	352, 405, 497
BlsI	GCNGC	3 cut(s)	353, 406, 498
Bme18I	GGWCC	1 cut(s)	827
BmgT120I	GGNCC	1 cut(s)	827
BmiI	GGNNCC	4 cut(s)	99, 243, 828, 846
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpmI	CTGGAG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	425, 864
Bse1I	ACTGG	4 cut(s)	77, 533, 598, 1091
Bse3DI	GCAATG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	425, 864
BseGI	GGATG	2 cut(s)	297, 842
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	4 cut(s)	77, 533, 598, 1091
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	391, 508
Bsh1236I	CGCG	2 cut(s)	351, 806
BshFI	GGCC	3 cut(s)	167, 326, 457
BshNI	GGYRCC	1 cut(s)	844
BsiHKAI	GWGCWC	1 cut(s)	121
BslFI	GGGAC	3 cut(s)	59, 846, 1034
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	3 cut(s)	59, 846, 1034
BsmI	GAATGC	1 cut(s)	1022
BsnI	GGCC	3 cut(s)	167, 326, 457
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	516, 687, 749, 870, 875
Bsp19I	CCATGG	1 cut(s)	425
BspACI	CCGC	4 cut(s)	351, 675, 741, 806
BspANI	GGCC	3 cut(s)	167, 326, 457
BspFNI	CGCG	2 cut(s)	351, 806
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	4 cut(s)	99, 243, 828, 846
BspPI	GGATC	2 cut(s)	757, 865
BspT107I	GGYRCC	1 cut(s)	844
BsrBI	CCGCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	4 cut(s)	77, 533, 598, 1091
BssECI	CCNNGG	2 cut(s)	425, 864
BssMI	GATC	5 cut(s)	516, 687, 749, 870, 875
BssT1I	CCWWGG	2 cut(s)	425, 864
Bst4CI	ACNGT	3 cut(s)	637, 1072, 1130
Bst6I	CTCTTC	2 cut(s)	366, 1053
BstC8I	GCNNGC	5 cut(s)	69, 145, 808, 936, 991
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	297, 842
BstFNI	CGCG	2 cut(s)	351, 806
BstKTI	GATC	5 cut(s)	519, 690, 752, 873, 878
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	5 cut(s)	516, 687, 749, 870, 875
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 812, 887
BstNSI	RCATGY	1 cut(s)	913
BstUI	CGCG	2 cut(s)	351, 806
BstV1I	GCAGC	2 cut(s)	391, 508
BstX2I	RGATCY	1 cut(s)	870
BstYI	RGATCY	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	167, 326, 457
BtgI	CCRYGG	1 cut(s)	425
BtsCI	GGATG	2 cut(s)	297, 842
BtsIMutI	CAGTG	2 cut(s)	354, 1084
Cac8I	GCNNGC	5 cut(s)	69, 145, 808, 936, 991
CciI	TCATGA	1 cut(s)	1005
Cfr13I	GGNCC	1 cut(s)	827
CseI	GACGC	2 cut(s)	575, 1124
Csp6I	GTAC	2 cut(s)	1102, 1131
CviAII	CATG	7 cut(s)	426, 520, 816, 910, 949, 961, 1006
CviQI	GTAC	2 cut(s)	1102, 1131
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	5 cut(s)	518, 689, 751, 872, 877
DpnII	GATC	5 cut(s)	516, 687, 749, 870, 875
DraI	TTTAAA	1 cut(s)	726
DraIII	CACNNNGTG	1 cut(s)	1074
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	366, 1053
EarI	CTCTTC	2 cut(s)	366, 1053
EciI	GGCGGA	1 cut(s)	690
Eco130I	CCWWGG	2 cut(s)	425, 864
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	425, 864
ErhI	CCWWGG	2 cut(s)	425, 864
FaeI	CATG	7 cut(s)	429, 523, 819, 913, 952, 964, 1009
FaqI	GGGAC	3 cut(s)	59, 846, 1034
FatI	CATG	7 cut(s)	425, 519, 815, 909, 948, 960, 1005
FauI	CCCGC	1 cut(s)	799
Fnu4HI	GCNGC	3 cut(s)	352, 405, 497
FokI	GGATG	2 cut(s)	284, 849
Fsp4HI	GCNGC	3 cut(s)	352, 405, 497
FspBI	CTAG	3 cut(s)	227, 302, 849
GluI	GCNGC	3 cut(s)	352, 405, 497
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	167, 326, 457
HgaI	GACGC	2 cut(s)	575, 1124
Hin1II	CATG	7 cut(s)	429, 523, 819, 913, 952, 964, 1009
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	1 cut(s)	507
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	2 cut(s)	178, 206
Hpy188I	TCNGA	3 cut(s)	91, 291, 875
Hpy188III	TCNNGA	5 cut(s)	544, 668, 715, 1006, 1109
Hpy8I	GTNNAC	2 cut(s)	178, 206
HpyAV	CCTTC	3 cut(s)	313, 648, 665
HpyCH4III	ACNGT	3 cut(s)	637, 1072, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 812, 887
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	7 cut(s)	429, 523, 819, 913, 952, 964, 1009
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	5 cut(s)	516, 687, 749, 870, 875
LmnI	GCTCC	3 cut(s)	103, 116, 962
Lsp1109I	GCAGC	2 cut(s)	391, 508
MaeI	CTAG	3 cut(s)	227, 302, 849
MaeIII	GTNAC	2 cut(s)	311, 631
MalI	GATC	5 cut(s)	518, 689, 751, 872, 877
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	5 cut(s)	516, 687, 749, 870, 875
MboII	GAAGA	6 cut(s)	383, 663, 970, 973, 1018, 1070
MflI	RGATCY	1 cut(s)	870
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	3 cut(s)	50, 292, 699
MluNI	TGGCCA	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	8 cut(s)	107, 302, 316, 361, 394, 468, 584, 953
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	7 cut(s)	59, 123, 177, 603, 725, 906, 1065
MslI	CAYNNNNRTG	1 cut(s)	896
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	881
Mva1269I	GAATGC	1 cut(s)	1022
MvnI	CGCG	2 cut(s)	351, 806
MwoI	GCNNNNNNNGC	3 cut(s)	401, 812, 887
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	5 cut(s)	516, 687, 749, 870, 875
NlaIII	CATG	7 cut(s)	429, 523, 819, 913, 952, 964, 1009
NlaIV	GGNNCC	4 cut(s)	99, 243, 828, 846
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	913
PagI	TCATGA	1 cut(s)	1005
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	1 cut(s)	909
PctI	GAATGC	1 cut(s)	1022
PfeI	GAWTC	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	353, 406, 498
PscI	ACATGT	1 cut(s)	909
PspN4I	GGNNCC	4 cut(s)	99, 243, 828, 846
PspPI	GGNCC	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	870
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	1103, 1132
RsaNI	GTAC	2 cut(s)	1102, 1131
RseI	CAYNNNNRTG	1 cut(s)	896
SaqAI	TTAA	7 cut(s)	59, 123, 177, 603, 725, 906, 1065
SatI	GCNGC	3 cut(s)	352, 405, 497
Sau3AI	GATC	5 cut(s)	516, 687, 749, 870, 875
Sau96I	GGNCC	1 cut(s)	827
SduI	GDGCHC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	896
Sse9I	AATT	3 cut(s)	50, 292, 699
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	4 cut(s)	351, 675, 741, 806
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	227, 302, 849
StuI	AGGCCT	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	425, 864
TaaI	ACNGT	3 cut(s)	637, 1072, 1130
TaqI	TCGA	5 cut(s)	366, 626, 639, 902, 1056
TasI	AATT	3 cut(s)	50, 292, 699
TatI	WGTACW	1 cut(s)	1101
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	7 cut(s)	59, 123, 177, 603, 725, 906, 1065
Tru9I	TTAA	7 cut(s)	59, 123, 177, 603, 725, 906, 1065
TscAI	CASTG	2 cut(s)	361, 1091
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	404, 496
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	17, 977, 1018
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	2 cut(s)	361, 1091
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	913
XspI	CTAG	3 cut(s)	227, 302, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.