Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002419

Physical Location & Seq

Genomic Coordinates Reverse (-)

77297381 .. 77298576

Gene Structure 1196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0576500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTGCAGAAATCAAGGATGTGATTGCTGTGTGCAAATGGGTCTCTGAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGCTCAACTGTCCTTTATCATCCAAAGTTGGGATTTTGATGATCAGAAAGAAGACGTGAAGAAGAAGCAAGGCGCGGCGAGCATTTTGAAGAGAATGAAGCAGAATGGTAGGAGAGGAGTTGGGCGGGGTAAGAACTCTTCGGATGTTTCGGAGGATGAGAGTAAGGATAGCATGGTGGATGAAGAAGAGGAGGAGGAGGTGGCGGAAGAGGAGGAAGAAAAGAAGAAGAAGAGGACTGGGAGGAAGAAAACGGAGGTGGAGAGGAAAGTGAGGGTGACTCGTAGCTCTAGTGGAAATCGGGGAAGAGGTCAGGAGAGCGGTGGGAGGGGAAAGAGAGGGGTCGGGAGGCCGCCTAAGAAACCAGAGACGGCGGCGGCTGGAAGCGGAAAAGGGGGGGGAGACAATGGCGAGGCGGATCAGGTGGGGAGTGCAGGGAGGCCAAGGAAACGAACAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

198

Amino Acids

21.49

Weight (kDa)

9.95

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50310 AT1G50310 AT3G19940 AT5G23270
fragaria_vesca	FvH4_2g06240 FvH4_2g06241 FvH4_2g06250
malus_domestica	MD00G1119600.v1.1 MD13G1238600.v1.1 MD13G1238700.v1.1 MD15G1433200.v1.1 MD16G1243500.v1.1
prunus_persica	Prupe.1G070800_v2.0.a1 Prupe.1G070900_v2.0.a1
pyrus_communis	pycom13g21110 pycom13g21120
rosa_chinensis	RchiOBHm_Chr4g0398701 RchiOBHm_Chr6g0256931 RchiOBHm_Chr6g0256941
rosa_laevigata	RLG00000009330 RLG00000014660 RLG00000014663
rosa_multiflora	Rmu_sc0000659.1_g000045 Rmu_sc0008600.1_g000002 Rmu_sc0017404.1_g000011
rosa_roxburghii	Rroxscaffold_5G00343660 Rroxscaffold_7G00208330 Rroxscaffold_7G00208350
rosa_rugosa	Rorug04G0010900 Rorug05G0576400 Rorug05G0576500 Rorug05G0576600
rosa_samantha	Rh4DG080100 Rh6AG095000 Rh6BG086100 Rh6BG086200 Rh6CG082200 Rh6DG077900
rosa_wichuraiana	Rw4G007340 Rw6G008110 Rw6G008130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	453
AccII	CGCG	1 cut(s)	209
AciI	CCGC	9 cut(s)	209, 259, 338, 453, 485, 506, 509, 519, 548
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	94, 111
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	2 cut(s)	137, 420
AluI	AGCT	2 cut(s)	137, 420
Alw26I	GTCTC	3 cut(s)	91, 494, 528
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	2 cut(s)	482, 572
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	94, 111
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	91, 494, 528
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	5 cut(s)	135, 210, 485, 507, 510
BlsI	GCNGC	5 cut(s)	136, 211, 486, 508, 511
BmgBI	CACGTC	1 cut(s)	190
BmrI	ACTGGG	3 cut(s)	33, 51, 381
BmuI	ACTGGG	3 cut(s)	33, 51, 381
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	3 cut(s)	28, 46, 376
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	5 cut(s)	67, 153, 283, 295, 319
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	28, 46, 376
BseRI	GAGGAG	6 cut(s)	21, 264, 338, 341, 344, 359
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	484, 574
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	3 cut(s)	91, 494, 528
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	484, 574
Bso31I	GGTCTC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	175, 550
BspACI	CCGC	9 cut(s)	209, 259, 338, 453, 485, 506, 509, 519, 548
BspANI	GGCC	2 cut(s)	484, 574
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	453
BsrI	ACTGG	3 cut(s)	28, 46, 376
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	2 cut(s)	175, 550
BssT1I	CCWWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	6 cut(s)	218, 277, 315, 336, 359, 433
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	90, 489
BstF5I	GGATG	5 cut(s)	67, 153, 283, 295, 319
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	178, 553
BstMAI	GTCTC	3 cut(s)	91, 494, 528
BstMBI	GATC	2 cut(s)	175, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	484, 574
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	5 cut(s)	67, 153, 283, 295, 319
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	209
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	6 cut(s)	32, 137, 420, 484, 512, 574
CviKI_1	RGCY	6 cut(s)	32, 137, 420, 484, 512, 574
DdeI	CTNAG	2 cut(s)	90, 489
DpnI	GATC	2 cut(s)	177, 552
DpnII	GATC	2 cut(s)	175, 550
Eam1104I	CTCTTC	6 cut(s)	218, 277, 315, 336, 359, 433
EarI	CTCTTC	6 cut(s)	218, 277, 315, 336, 359, 433
EciI	GGCGGA	2 cut(s)	353, 563
Eco130I	CCWWGG	1 cut(s)	575
Eco31I	GGTCTC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	575
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	1 cut(s)	310
FaiI	YATR	1 cut(s)	308
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	135, 210, 485, 507, 510
FokI	GGATG	5 cut(s)	74, 140, 290, 302, 326
Fsp4HI	GCNGC	5 cut(s)	135, 210, 485, 507, 510
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	5 cut(s)	135, 210, 485, 507, 510
HaeIII	GGCC	2 cut(s)	484, 574
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	412
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	4 cut(s)	91, 180, 277, 286
Hpy188III	TCNNGA	2 cut(s)	446, 478
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	50, 78, 134, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	90, 489
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	175, 550
LpnPI	CCDG	8 cut(s)	9, 27, 357, 431, 498, 510, 539, 552
Lsp1109I	GCAGC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	177, 552
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	2 cut(s)	175, 550
MluCI	AATT	2 cut(s)	94, 111
MlyI	GAGTC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	2 cut(s)	175, 550
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	409
PkrI	GCNGC	5 cut(s)	136, 211, 486, 508, 511
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	136
SatI	GCNGC	5 cut(s)	135, 210, 485, 507, 510
Sau3AI	GATC	2 cut(s)	175, 550
SchI	GAGTC	1 cut(s)	406
SetI	ASST	9 cut(s)	20, 139, 192, 336, 393, 422, 445, 558, 596
SfcI	CTRYAG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	94, 111
SsiI	CCGC	9 cut(s)	209, 259, 338, 453, 485, 506, 509, 519, 548
SspMI	CTAG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	192
TasI	AATT	2 cut(s)	94, 111
TauI	GCSGC	4 cut(s)	212, 487, 509, 512
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	245, 330
TspGWI	ACGGA	1 cut(s)	401
XapI	RAATTY	2 cut(s)	94, 111
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.