RLG00000009330
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
51153568 .. 51155280
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009330

Sequence Viewer

Length: 1548 bp
ATGGCAGGAGGTGGTATTAGTGTTCAGGGCGGAGGTAGAAACTATGAAGGAGGTGTCACCGTTTTTGTGGTATTAGCATGTGTGGCGGCTGCCACGGGTGGTCTCCTCTTTGGATATGATATTGGCATCTCAGGAGGTGTGACATCAATGGAGTCATTCTTGAGCAAGTTCTTCCCATCTGTGCACCACAAGATGAAGAATGAGACTGCTGATCAAAACCAGTACTGTAAATTCGATAGCCAACTCCTCACATTGTTCACCTCTTCTCTTTACATTGCTGCGCTGGTGGCTTCCTTCTTTGCTTCATCGGTAACTAGGAGATTTGGTCGAAAAATATCCATGCTAGTGGCAGGCCTTGTTTTCTTCATTGGCTCTATCCTAAACGGTATTGCCAGTAACATCATAATTTTGATCATAAGTCGTCTCTTGCTTGGTATTGGTGTTGGATTTGCTAATCAGTCTGTTCCGGTTTATCTTGCGGAAATGGCCCCAACAAAGATTAGAGGAGCACTCAACATGGGCTTTCAAATGGCCATCACCATTGGTATTCTAGTAGCCGGGCTTGTTAACTTTGGCACTGCCAAGATCAAGGGTGGATATGGTTGGAGGATTTCTTTGGCTCTTGCAGCAATCCCTTCCTTGATCATGACTGTTTCTGCAATCTTTCTGCCCGATACACCAAATTCAATGGTAGAGAGAGGACACCCTGAGAAGGCTAGGAAAATGTTACAAAAAATTCGTGGCACTGACAATGTCAATGATGAGTTCCAAGACCTTGTTGATGCTACTGAGGCTGCACATAAAGTGGAGAACCAATGGGGAAACATCATGCAACCAAGATACAGGCCTCAACTTATCATTTGTGTTCTCATTCCATTCTTCCAGCAGCTCACGGGCATCAATGTGATCATGTTTTACGCGCCTGTTCTTTTCAAGACTTTGGGCTTTGGAGATGAAGCTTCTCTCATGTCTGCAGTCATCACTGGTGGTGTTAACGTTGTTTGTACCGTAGTGTCCATGGTCGTTGTTGACAAGTTTGGAAGAAAAGCGTTATTCCTCGAAGGTGGATTGCAAATGGTCCTTTGCCAGATTGCCGTCGGAGTCATGATTGCCTTGCAGTTTGGTCTTAGCGGACAAGGAGCATTTACAAGGGGTGAAGCTAATTGGGTCTTGGTCTTCATCTGTGGATATGTTGCAGCATTTGCATGGTCTTGGGGTCCATTAGGTTGGTTGGTCCCGAGTGAGATCTGTCCTTTGGAGATCCGATCAGCCGGACAAGCCATCAATGTCTCAGTTAACATGTTCTTTACTTTTCTCATTGGCCAGGGCTTCCTCACCATGCTTTGCCACCTGAAGTATGGTCTCTTCTTTTTCTTTGCCAGTTGGGTGACCGTTATGACCATTTTCGTCGCCTTCTTCCTACCCGAGACAAAGAACGTCCCTATTGAAGAGATGAATAGATTGTGGAAAGCACACTGGTTTTGGGGCAAGTACATCCCAGATGAGGCTGTCATTGGTCATGATAAACATGACAACGCTGTAGTTTGA

Protein Analysis

516

Amino Acids

56.04

Weight (kDa)

8.68

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 27 - 489 3.7e-129 Sugar (and other) transporter
MFS_1 PF07690 78 - 436 1.1e-25 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 920
AciI CCGC 4 cut(s) 30, 86, 479, 1131
AclI AACGTT 1 cut(s) 996
AclWI GGATC 1 cut(s) 1255
AcoI YGGCCR 2 cut(s) 531, 1321
AcsI RAATTY 3 cut(s) 230, 682, 735
AcuI CTGAAG 1 cut(s) 1373
AfaI GTAC 3 cut(s) 224, 1006, 1493
AfiI CCNNNNNNNGG 2 cut(s) 712, 1504
AflIII ACRYGT 1 cut(s) 1299
AgsI TTSAA 4 cut(s) 527, 687, 934, 1448
AjnI CCWGG 1 cut(s) 1323
AluBI AGCT 3 cut(s) 889, 959, 1160
AluI AGCT 3 cut(s) 889, 959, 1160
Alw21I GWGCWC 2 cut(s) 186, 511
Alw26I GTCTC 6 cut(s) 107, 197, 428, 1294, 1367, 1421
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 1255
Ama87I CYCGRG 2 cut(s) 1237, 1424
AoxI GGCC 5 cut(s) 352, 486, 531, 845, 1321
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 6 cut(s) 89, 278, 626, 794, 886, 1196
ApoI RAATTY 3 cut(s) 230, 682, 735
AspLEI GCGC 2 cut(s) 283, 922
AspS9I GGNCC 4 cut(s) 487, 1078, 1217, 1234
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 6 cut(s) 49, 250, 529, 1166, 1327, 1399
AvaI CYCGRG 2 cut(s) 1237, 1424
AvaII GGWCC 3 cut(s) 1078, 1217, 1234
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 2 cut(s) 533, 1323
BarI GAAGNNNNNNTAC 2 cut(s) 1349, 1381
BbsI GAAGAC 1 cut(s) 1168
Bbv12I GWGCWC 2 cut(s) 186, 511
BbvI GCAGC 6 cut(s) 76, 265, 638, 781, 898, 1208
BccI CCATC 3 cut(s) 184, 542, 1289
BceAI ACGGC 1 cut(s) 1079
BciT130I CCWGG 1 cut(s) 1325
BclI TGATCA 4 cut(s) 211, 411, 642, 906
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 6 cut(s) 107, 197, 428, 1294, 1367, 1421
BfaI CTAG 4 cut(s) 315, 344, 551, 717
BfmI CTRYAG 2 cut(s) 972, 1539
BglII AGATCT 1 cut(s) 1245
BisI GCNGC 7 cut(s) 87, 90, 279, 627, 795, 887, 1197
BlsI GCNGC 7 cut(s) 88, 91, 280, 628, 796, 888, 1198
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 559, 1325
Bme18I GGWCC 3 cut(s) 1078, 1217, 1234
BmeT110I CYCGRG 2 cut(s) 1237, 1424
BmgT120I GGNCC 4 cut(s) 487, 1078, 1217, 1234
BmiI GGNNCC 3 cut(s) 489, 1218, 1236
BmrFI CCNGG 2 cut(s) 559, 1325
BmsI GCATC 3 cut(s) 135, 772, 906
BpiI GAAGAC 1 cut(s) 1168
BplI GAGNNNNNCTC 2 cut(s) 495, 527
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 559
BsaI GGTCTC 2 cut(s) 107, 1367
BsaJI CCNNGG 3 cut(s) 93, 1017, 1324
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 712, 1504
Bse1I ACTGG 5 cut(s) 220, 393, 988, 1380, 1481
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 1325
BseDI CCNNGG 3 cut(s) 93, 1017, 1324
BseGI GGATG 1 cut(s) 1494
BseLI CCNNNNNNNGG 2 cut(s) 712, 1504
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 4 cut(s) 144, 699, 780, 1305
BseNI ACTGG 5 cut(s) 220, 393, 988, 1380, 1481
BseRI GAGGAG 3 cut(s) 95, 236, 519
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 6 cut(s) 76, 265, 638, 781, 898, 1208
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 920
BshFI GGCC 5 cut(s) 354, 488, 533, 847, 1323
BsiHKAI GWGCWC 2 cut(s) 186, 511
BsiHKCI CYCGRG 2 cut(s) 1237, 1424
BsiSI CCGG 3 cut(s) 467, 558, 1272
BslFI GGGAC 2 cut(s) 1220, 1424
BslI CCNNNNNNNGG 2 cut(s) 712, 1504
BsmAI GTCTC 6 cut(s) 107, 197, 428, 1294, 1367, 1421
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 2 cut(s) 1220, 1424
BsnI GGCC 5 cut(s) 354, 488, 533, 847, 1323
Bso31I GGTCTC 2 cut(s) 107, 1367
BsoBI CYCGRG 2 cut(s) 1237, 1424
Bsp1286I GDGCHC 2 cut(s) 186, 511
Bsp143I GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 4 cut(s) 30, 86, 479, 1131
BspANI GGCC 5 cut(s) 354, 488, 533, 847, 1323
BspCNI CTCAG 4 cut(s) 143, 700, 781, 1304
BspFNI CGCG 1 cut(s) 920
BspHI TCATGA 3 cut(s) 645, 1104, 1519
BspLI GGNNCC 3 cut(s) 489, 1218, 1236
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 1 cut(s) 1255
BspTNI GGTCTC 2 cut(s) 107, 1367
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 5 cut(s) 220, 393, 988, 1380, 1481
BssECI CCNNGG 3 cut(s) 93, 1017, 1324
BssMI GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
BssT1I CCWWGG 1 cut(s) 1017
Bst2UI CCWGG 1 cut(s) 1325
Bst4CI ACNGT 6 cut(s) 61, 227, 386, 652, 1009, 1393
Bst6I CTCTTC 3 cut(s) 268, 1370, 1443
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 5 cut(s) 130, 708, 789, 1127, 1291
BstDSI CCRYGG 2 cut(s) 93, 1017
BstEII GGTNACC 1 cut(s) 1387
BstF5I GGATG 1 cut(s) 1494
BstFNI CGCG 1 cut(s) 920
BstHHI GCGC 2 cut(s) 283, 922
BstKTI GATC 8 cut(s) 214, 414, 588, 645, 909, 1248, 1263, 1268
BstMAI GTCTC 6 cut(s) 107, 197, 428, 1294, 1367, 1421
BstMBI GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
BstMWI GCNNNNNNNGC 7 cut(s) 83, 287, 485, 626, 791, 1202, 1277
BstNI CCWGG 1 cut(s) 1325
BstNSI RCATGY 2 cut(s) 81, 1303
BstPI GGTNACC 1 cut(s) 1387
BstSCI CCNGG 2 cut(s) 557, 1323
BstSFI CTRYAG 2 cut(s) 972, 1539
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 920
BstV1I GCAGC 6 cut(s) 76, 265, 638, 781, 898, 1208
BstV2I GAAGAC 1 cut(s) 1168
BstX2I RGATCY 2 cut(s) 1245, 1260
BstXI CCANNNNNNTGG 2 cut(s) 346, 1227
BstYI RGATCY 2 cut(s) 1245, 1260
BsuRI GGCC 5 cut(s) 354, 488, 533, 847, 1323
BtgI CCRYGG 2 cut(s) 93, 1017
BtsCI GGATG 1 cut(s) 1494
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 4 cut(s) 576, 744, 981, 1474
Cac8I GCNNGC 1 cut(s) 352
CciI TCATGA 3 cut(s) 645, 1104, 1519
CfoI GCGC 2 cut(s) 283, 922
Cfr13I GGNCC 4 cut(s) 487, 1078, 1217, 1234
Csp6I GTAC 3 cut(s) 223, 1005, 1492
CviQI GTAC 3 cut(s) 223, 1005, 1492
DdeI CTNAG 5 cut(s) 130, 708, 789, 1127, 1291
DpnI GATC 8 cut(s) 213, 413, 587, 644, 908, 1247, 1262, 1267
DpnII GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
EaeI YGGCCR 2 cut(s) 531, 1321
Eam1104I CTCTTC 3 cut(s) 268, 1370, 1443
EarI CTCTTC 3 cut(s) 268, 1370, 1443
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 1017
Eco147I AGGCCT 2 cut(s) 354, 847
Eco31I GGTCTC 2 cut(s) 107, 1367
Eco47I GGWCC 3 cut(s) 1078, 1217, 1234
Eco57I CTGAAG 1 cut(s) 1373
Eco88I CYCGRG 2 cut(s) 1237, 1424
Eco91I GGTNACC 1 cut(s) 1387
EcoO65I GGTNACC 1 cut(s) 1387
EcoRII CCWGG 1 cut(s) 1323
EcoT14I CCWWGG 1 cut(s) 1017
ErhI CCWWGG 1 cut(s) 1017
Esp3I CGTCTC 1 cut(s) 428
FaqI GGGAC 2 cut(s) 1220, 1424
FbaI TGATCA 4 cut(s) 211, 411, 642, 906
Fnu4HI GCNGC 7 cut(s) 87, 90, 279, 627, 795, 887, 1197
FokI GGATG 1 cut(s) 1481
Fsp4HI GCNGC 7 cut(s) 87, 90, 279, 627, 795, 887, 1197
FspBI CTAG 4 cut(s) 315, 344, 551, 717
GlaI GCGC 2 cut(s) 282, 921
GluI GCNGC 7 cut(s) 87, 90, 279, 627, 795, 887, 1197
HaeIII GGCC 5 cut(s) 354, 488, 533, 847, 1323
HapII CCGG 3 cut(s) 467, 558, 1272
HhaI GCGC 2 cut(s) 283, 922
Hin6I GCGC 2 cut(s) 281, 920
HinP1I GCGC 2 cut(s) 281, 920
HincII GTYRAC 4 cut(s) 568, 994, 1030, 1297
HindII GTYRAC 4 cut(s) 568, 994, 1030, 1297
HindIII AAGCTT 1 cut(s) 957
HinfI GANTC 2 cut(s) 152, 1101
HpaI GTTAAC 3 cut(s) 568, 994, 1297
HpaII CCGG 3 cut(s) 467, 558, 1272
HphI GGTGA 6 cut(s) 49, 250, 529, 1166, 1327, 1399
Hpy166II GTNNAC 6 cut(s) 184, 258, 568, 994, 1030, 1297
Hpy188I TCNGA 2 cut(s) 1100, 1265
Hpy188III TCNNGA 7 cut(s) 132, 160, 646, 934, 1105, 1237, 1520
Hpy8I GTNNAC 6 cut(s) 184, 258, 568, 994, 1030, 1297
Hpy99I CGWCG 2 cut(s) 1100, 1412
HpyAV CCTTC 6 cut(s) 41, 304, 645, 706, 1055, 1423
HpyCH4III ACNGT 6 cut(s) 61, 227, 386, 652, 1009, 1393
HpyCH4IV ACGT 2 cut(s) 996, 1437
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 287, 485, 626, 791, 1202, 1277
HpyF3I CTNAG 5 cut(s) 130, 708, 789, 1127, 1291
HpySE526I ACGT 2 cut(s) 996, 1437
HspAI GCGC 2 cut(s) 281, 920
Ksp22I TGATCA 4 cut(s) 211, 411, 642, 906
KspAI GTTAAC 3 cut(s) 568, 994, 1297
Kzo9I GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
LmnI GCTCC 2 cut(s) 506, 1139
Lsp1109I GCAGC 6 cut(s) 76, 265, 638, 781, 898, 1208
LweI GCATC 3 cut(s) 135, 772, 906
MaeI CTAG 4 cut(s) 315, 344, 551, 717
MaeII ACGT 2 cut(s) 996, 1437
MaeIII GTNAC 6 cut(s) 55, 139, 310, 395, 726, 1387
MalI GATC 8 cut(s) 213, 413, 587, 644, 908, 1247, 1262, 1267
MboI GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
MflI RGATCY 2 cut(s) 1245, 1260
MhlI GDGCHC 2 cut(s) 186, 511
MlsI TGGCCA 2 cut(s) 533, 1323
MluCI AATT 5 cut(s) 230, 405, 682, 735, 1162
MluNI TGGCCA 2 cut(s) 533, 1323
MlyI GAGTC 2 cut(s) 161, 1110
MmeI TCCRAC 3 cut(s) 424, 584, 1078
Mox20I TGGCCA 2 cut(s) 533, 1323
MscI TGGCCA 2 cut(s) 533, 1323
MseI TTAA 3 cut(s) 567, 993, 1296
MslI CAYNNNNRTG 3 cut(s) 344, 902, 1204
Msp20I TGGCCA 2 cut(s) 533, 1323
MspI CCGG 3 cut(s) 467, 558, 1272
MspR9I CCNGG 2 cut(s) 559, 1325
MvaI CCWGG 1 cut(s) 1325
MvnI CGCG 1 cut(s) 920
MwoI GCNNNNNNNGC 7 cut(s) 83, 287, 485, 626, 791, 1202, 1277
NciI CCSGG 1 cut(s) 559
NcoI CCATGG 1 cut(s) 1017
NdeII GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
NlaIV GGNNCC 3 cut(s) 489, 1218, 1236
NmuCI GTSAC 3 cut(s) 55, 139, 1387
NspI RCATGY 2 cut(s) 81, 1303
PagI TCATGA 3 cut(s) 645, 1104, 1519
PceI AGGCCT 2 cut(s) 354, 847
PciI ACATGT 1 cut(s) 1299
PflFI GACNNNGTC 1 cut(s) 752
PkrI GCNGC 7 cut(s) 88, 91, 280, 628, 796, 888, 1198
PleI GAGTC 2 cut(s) 160, 1109
PpsI GAGTC 2 cut(s) 160, 1109
PscI ACATGT 1 cut(s) 1299
Psp1406I AACGTT 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 1323
PspEI GGTNACC 1 cut(s) 1387
PspGI CCWGG 1 cut(s) 1323
PspN4I GGNNCC 3 cut(s) 489, 1218, 1236
PspPI GGNCC 4 cut(s) 487, 1078, 1217, 1234
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 2 cut(s) 1245, 1260
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 3 cut(s) 224, 1006, 1493
RsaNI GTAC 3 cut(s) 223, 1005, 1492
RseI CAYNNNNRTG 3 cut(s) 344, 902, 1204
SaqAI TTAA 3 cut(s) 567, 993, 1296
SatI GCNGC 7 cut(s) 87, 90, 279, 627, 795, 887, 1197
Sau3AI GATC 8 cut(s) 211, 411, 585, 642, 906, 1245, 1260, 1265
Sau96I GGNCC 4 cut(s) 487, 1078, 1217, 1234
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 2 cut(s) 161, 1110
ScrFI CCNGG 2 cut(s) 559, 1325
SduI GDGCHC 2 cut(s) 186, 511
SfaNI GCATC 3 cut(s) 135, 772, 906
SfcI CTRYAG 2 cut(s) 972, 1539
SinI GGWCC 3 cut(s) 1078, 1217, 1234
SmiMI CAYNNNNRTG 3 cut(s) 344, 902, 1204
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 5 cut(s) 230, 405, 682, 735, 1162
SseBI AGGCCT 2 cut(s) 354, 847
SsiI CCGC 4 cut(s) 30, 86, 479, 1131
SspMI CTAG 4 cut(s) 315, 344, 551, 717
StuI AGGCCT 2 cut(s) 354, 847
StyD4I CCNGG 2 cut(s) 557, 1323
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 6 cut(s) 61, 227, 386, 652, 1009, 1393
TaiI ACGT 2 cut(s) 999, 1440
TaqI TCGA 3 cut(s) 234, 328, 1059
TasI AATT 5 cut(s) 230, 405, 682, 735, 1162
TatI WGTACW 2 cut(s) 222, 1491
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 567, 993, 1296
Tru9I TTAA 3 cut(s) 567, 993, 1296
TscAI CASTG 4 cut(s) 583, 751, 988, 1481
TseFI GTSAC 3 cut(s) 55, 139, 1387
TseI GCWGC 6 cut(s) 89, 278, 626, 794, 886, 1196
Tsp45I GTSAC 3 cut(s) 55, 139, 1387
TspDTI ATGAA 7 cut(s) 60, 209, 294, 355, 969, 1168, 1469
TspRI CASTG 4 cut(s) 583, 751, 988, 1481
Tth111I GACNNNGTC 1 cut(s) 752
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 3 cut(s) 1078, 1217, 1234
XapI RAATTY 3 cut(s) 230, 682, 735
XceI RCATGY 2 cut(s) 81, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 1355
XspI CTAG 4 cut(s) 315, 344, 551, 717
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.