pycom13g21120
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
17339975 .. 17341867
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21120.1

Sequence Viewer

Length: 1371 bp
ATGGCTGGAGGGGCTTTCGTTGGTGATGGTGGAGGGAGGAGCTATGAAGGAGGTGTCACCGTCTTTGTGCTATTCACTTGTGTGGCGGCTGCCATGGGCGGTCTCCTCTTCGGATATGATCTCGGAATCTCAGGGGGAGTGACTTCAATGGAGTCGTTCTTGAAAAAGTTCTTCCCATCTGTGTTCCACAAAATGAAGAATGAGACTCATCAAAACCAGTATTGCAAATTTGACAGCCAGCTGCTTACATTGTTCACGTCGTGCCTCTACATTGCGGCGTTGGTGGCATCCTTTTTGGCTTCAACGGTTACTAGGAAATTTGGTCGAAAAATCTCCATGTTTGTGGCAGGCCTTGTGTTTCTTCTTGGCTCTATCCTAAATGGTGTTGCCAATAACATTACACTTTTGATCATTGGTCGTCTCTTGCTTGGTGTTGGTGTTGGATTTGCAAACCAGGGTCAGATTCGGGCTACCTTAGGGCTAGCTAGCTACCTGATTCATAATGGCGTGGTGATTTTGCAGTCTGTTCCTGTTTATCTAGCGGAAATGGCTCCAACAAAGATTAGAGGAGCACTAAACATGGGGTTCCAAATGGCCATCACCATCGGTATTTTAGTGGCTGGTCTTGTCAACTTTGGCACTGCCAAGATCAAGGGCGGCTTTGGCTGGAGAATATCTCTCGCGCTTGCTGCCGTTCCTTCTCTGCTGATGACTCTTGCCGCAATCTTTCTTCCTGACACTCCAAATTCCATCCTAGAAAGAGGTCACCCCGAGAAGGCCAAGAAAATGTTAAAAAAAATCCGTGGCACAAACAACGTTGATGATGAGTTCCAAGACCTTCTTGATGCTACTGAGGCTGCTAAAAACGTGGACAACCAATGGACGAACATCACACAACCAAGATATAGGCCTCAACTTGTCATTTGCTTCCTCATTCCATTTTTCCAGCAGCTCACTGGCATCAATGTGATCATGTTTTACGCCCCAGTACTTTTCAAGACATTGGGTTTTGGGGATGAAGCTTCTCTAATGTCCACAGTCATCACCGGCAGTGTTAATGTGGTCTCTACCTTGGTCTCCATTTTCACAGTAGATAAGTTTGGAAGAAGAATATTGTTCCTTGAAGGTGGTACGCAAATGATGATATGCCAGGTTGCTATCGGAGTGATGATAGCCATGAAGTTTGGTCTTAGTGGAGAGGGATCATTTACAAAACATGAAGCCAATTGGATCTTGTTCTTGATATGTGCATATGTAGCAGCATTTGCATGGTCTTGGGGTCCGTTGGGGTGGCTGGTGCCAAGTGAGATCTGCCCTCTCGAGATCCAATTTCAACGAGATCAGCCGGACAAGCCATCAACGTCTCGGTGA

Protein Analysis

457

Amino Acids

49.4

Weight (kDa)

9.17

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 27 - 151 6.1e-24 Sugar (and other) transporter
MFS_1 PF07690 64 - 152 1.4e-06 Major Facilitator Superfamily
Sugar_tr PF00083 174 - 442 2.3e-77 Sugar (and other) transporter
MFS_1 PF07690 176 - 425 1.9e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1297
AccII CGCG 1 cut(s) 683
AciI CCGC 6 cut(s) 86, 99, 275, 542, 657, 720
AclI AACGTT 1 cut(s) 816
AclWI GGATC 3 cut(s) 1210, 1238, 1318
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 3 cut(s) 227, 317, 745
AdeI CACNNNGTG 1 cut(s) 261
AfaI GTAC 2 cut(s) 990, 1132
AfiI CCNNNNNNNGG 1 cut(s) 775
AgsI TTSAA 6 cut(s) 147, 163, 303, 997, 1124, 1334
AjiI CACGTC 1 cut(s) 258
AjnI CCWGG 2 cut(s) 453, 1149
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 6 cut(s) 42, 241, 485, 489, 952, 1022
AluI AGCT 6 cut(s) 42, 241, 485, 489, 952, 1022
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 5 cut(s) 107, 197, 425, 1069, 1081
AlwI GGATC 3 cut(s) 1210, 1238, 1318
Ama87I CYCGRG 2 cut(s) 770, 1319
AoxI GGCC 4 cut(s) 349, 594, 777, 908
ApeKI GCWGC 6 cut(s) 89, 241, 689, 857, 949, 1259
ApoI RAATTY 3 cut(s) 227, 317, 745
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 1 cut(s) 1280
AsuHPI GGTGA 6 cut(s) 35, 49, 523, 592, 758, 1036
AsuNHI GCTAGC 2 cut(s) 481, 485
AvaI CYCGRG 2 cut(s) 770, 1319
AvaII GGWCC 1 cut(s) 1280
AxyI CCTNAGG 1 cut(s) 475
BalI TGGCCA 1 cut(s) 596
BanI GGYRCC 1 cut(s) 1297
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 6 cut(s) 76, 228, 676, 844, 961, 1271
BccI CCATC 6 cut(s) 20, 184, 605, 611, 758, 1363
BceAI ACGGC 1 cut(s) 677
BciT130I CCWGG 2 cut(s) 455, 1151
BclI TGATCA 2 cut(s) 408, 969
BcoDI GTCTC 5 cut(s) 107, 197, 425, 1069, 1081
BfaI CTAG 5 cut(s) 312, 482, 486, 539, 755
BglII AGATCT 1 cut(s) 1308
BmcAI AGTACT 1 cut(s) 990
Bme1390I CCNGG 2 cut(s) 455, 1151
Bme18I GGWCC 1 cut(s) 1280
BmeT110I CYCGRG 2 cut(s) 770, 1319
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 1280
BmiI GGNNCC 4 cut(s) 552, 587, 1281, 1299
BmrFI CCNGG 2 cut(s) 455, 1151
BmrI ACTGGG 1 cut(s) 980
BmsI GCATC 3 cut(s) 296, 835, 969
BmtI GCTAGC 2 cut(s) 485, 489
BmuI ACTGGG 1 cut(s) 980
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpmI CTGGAG 2 cut(s) 27, 688
BsaI GGTCTC 3 cut(s) 107, 1069, 1081
BsaJI CCNNGG 4 cut(s) 93, 454, 802, 1071
Bsc4I CCNNNNNNNGG 1 cut(s) 775
Bse118I RCCGGY 1 cut(s) 1046
Bse1I ACTGG 3 cut(s) 217, 961, 986
Bse21I CCTNAGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 455, 1151
BseDI CCNNGG 4 cut(s) 93, 454, 802, 1071
BseGI GGATG 3 cut(s) 287, 750, 1021
BseLI CCNNNNNNNGG 1 cut(s) 775
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 144, 843
BseNI ACTGG 3 cut(s) 217, 961, 986
BseRI GAGGAG 3 cut(s) 52, 95, 582
BseXI GCAGC 6 cut(s) 76, 228, 676, 844, 961, 1271
Bsh1236I CGCG 1 cut(s) 683
BshFI GGCC 4 cut(s) 351, 596, 779, 910
BshNI GGYRCC 1 cut(s) 1297
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 2 cut(s) 770, 1319
BsiSI CCGG 2 cut(s) 1047, 1346
BslI CCNNNNNNNGG 1 cut(s) 775
BsmAI GTCTC 5 cut(s) 107, 197, 425, 1069, 1081
BsmBI CGTCTC 1 cut(s) 425
BsnI GGCC 4 cut(s) 351, 596, 779, 910
Bso31I GGTCTC 3 cut(s) 107, 1069, 1081
BsoBI CYCGRG 2 cut(s) 770, 1319
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 86, 99, 275, 542, 657, 720
BspANI GGCC 4 cut(s) 351, 596, 779, 910
BspCNI CTCAG 2 cut(s) 143, 844
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 4 cut(s) 552, 587, 1281, 1299
BspOI GCTAGC 2 cut(s) 485, 489
BspPI GGATC 3 cut(s) 1210, 1238, 1318
BspT107I GGYRCC 1 cut(s) 1297
BspTNI GGTCTC 3 cut(s) 107, 1069, 1081
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 1046
BsrI ACTGG 3 cut(s) 217, 961, 986
BssAI RCCGGY 1 cut(s) 1046
BssECI CCNNGG 4 cut(s) 93, 454, 802, 1071
BssMI GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
BssT1I CCWWGG 2 cut(s) 93, 1071
Bst2UI CCWGG 2 cut(s) 455, 1151
Bst4CI ACNGT 4 cut(s) 61, 307, 1039, 1090
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstC8I GCNNGC 5 cut(s) 239, 349, 483, 487, 687
BstDEI CTNAG 4 cut(s) 130, 475, 852, 1190
BstDSI CCRYGG 2 cut(s) 93, 802
BstEII GGTNACC 1 cut(s) 764
BstF5I GGATG 3 cut(s) 287, 750, 1021
BstFNI CGCG 1 cut(s) 683
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 9 cut(s) 121, 411, 651, 972, 1205, 1233, 1311, 1326, 1342
BstMAI GTCTC 5 cut(s) 107, 197, 425, 1069, 1081
BstMBI GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
BstMWI GCNNNNNNNGC 9 cut(s) 11, 284, 548, 663, 689, 854, 1256, 1265, 1351
BstNI CCWGG 2 cut(s) 455, 1151
BstPI GGTNACC 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 453, 1149
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 6 cut(s) 76, 228, 676, 844, 961, 1271
BstX2I RGATCY 3 cut(s) 1230, 1308, 1323
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 3 cut(s) 1230, 1308, 1323
Bsu36I CCTNAGG 1 cut(s) 475
BsuRI GGCC 4 cut(s) 351, 596, 779, 910
BtgI CCRYGG 2 cut(s) 93, 802
BtrI CACGTC 1 cut(s) 258
BtsCI GGATG 3 cut(s) 287, 750, 1021
BtsI GCAGTG 2 cut(s) 639, 1057
BtsIMutI CAGTG 3 cut(s) 639, 954, 1057
Cac8I GCNNGC 5 cut(s) 239, 349, 483, 487, 687
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 1 cut(s) 1046
Cfr13I GGNCC 1 cut(s) 1280
Csp6I GTAC 2 cut(s) 989, 1131
CviAII CATG 7 cut(s) 94, 337, 580, 973, 1177, 1217, 1269
CviQI GTAC 2 cut(s) 989, 1131
DdeI CTNAG 4 cut(s) 130, 475, 852, 1190
DpnI GATC 9 cut(s) 120, 410, 650, 971, 1204, 1232, 1310, 1325, 1341
DpnII GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
DraIII CACNNNGTG 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 93, 1071
Eco147I AGGCCT 2 cut(s) 351, 910
Eco31I GGTCTC 3 cut(s) 107, 1069, 1081
Eco47I GGWCC 1 cut(s) 1280
Eco81I CCTNAGG 1 cut(s) 475
Eco88I CYCGRG 2 cut(s) 770, 1319
Eco91I GGTNACC 1 cut(s) 764
EcoO65I GGTNACC 1 cut(s) 764
EcoRII CCWGG 2 cut(s) 453, 1149
EcoT14I CCWWGG 2 cut(s) 93, 1071
ErhI CCWWGG 2 cut(s) 93, 1071
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 7 cut(s) 97, 340, 583, 976, 1180, 1220, 1272
FalI AAGNNNNNCTT 4 cut(s) 644, 676, 825, 857
FatI CATG 7 cut(s) 93, 336, 579, 972, 1176, 1216, 1268
FauNDI CATATG 1 cut(s) 1252
FbaI TGATCA 2 cut(s) 408, 969
FokI GGATG 3 cut(s) 274, 737, 1028
FspBI CTAG 5 cut(s) 312, 482, 486, 539, 755
GlaI GCGC 1 cut(s) 684
GsuI CTGGAG 2 cut(s) 27, 688
HaeIII GGCC 4 cut(s) 351, 596, 779, 910
HapII CCGG 2 cut(s) 1047, 1346
HhaI GCGC 1 cut(s) 685
Hin1II CATG 7 cut(s) 97, 340, 583, 976, 1180, 1220, 1272
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 6 cut(s) 126, 152, 205, 463, 496, 712
HpaII CCGG 2 cut(s) 1047, 1346
HphI GGTGA 6 cut(s) 35, 49, 523, 592, 758, 1036
Hpy166II GTNNAC 4 cut(s) 255, 631, 871, 1035
Hpy188I TCNGA 4 cut(s) 113, 125, 462, 1163
Hpy188III TCNNGA 7 cut(s) 160, 734, 842, 997, 1240, 1319, 1321
Hpy8I GTNNAC 4 cut(s) 255, 631, 871, 1035
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 5 cut(s) 41, 708, 769, 848, 1118
HpyCH4III ACNGT 4 cut(s) 61, 307, 1039, 1090
HpyCH4IV ACGT 4 cut(s) 257, 816, 867, 1361
HpyCH4V TGCA 5 cut(s) 225, 449, 520, 1250, 1268
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 284, 548, 663, 689, 854, 1256, 1265, 1351
HpyF3I CTNAG 4 cut(s) 130, 475, 852, 1190
HpySE526I ACGT 4 cut(s) 257, 816, 867, 1361
Hsp92II CATG 7 cut(s) 97, 340, 583, 976, 1180, 1220, 1272
HspAI GCGC 1 cut(s) 683
Ksp22I TGATCA 2 cut(s) 408, 969
Kzo9I GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
LmnI GCTCC 3 cut(s) 39, 556, 569
Lsp1109I GCAGC 6 cut(s) 76, 228, 676, 844, 961, 1271
LweI GCATC 3 cut(s) 296, 835, 969
MaeI CTAG 5 cut(s) 312, 482, 486, 539, 755
MaeII ACGT 4 cut(s) 257, 816, 867, 1361
MaeIII GTNAC 4 cut(s) 55, 139, 307, 764
MalI GATC 9 cut(s) 120, 410, 650, 971, 1204, 1232, 1310, 1325, 1341
MboI GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
MboII GAAGA 7 cut(s) 100, 163, 208, 353, 722, 1116, 1119
MfeI CAATTG 1 cut(s) 1225
MflI RGATCY 3 cut(s) 1230, 1308, 1323
MhlI GDGCHC 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 5 cut(s) 227, 317, 745, 1225, 1328
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 3 cut(s) 161, 199, 706
MmeI TCCRAC 2 cut(s) 421, 578
Mox20I TGGCCA 1 cut(s) 596
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 596
MseI TTAA 2 cut(s) 791, 1056
MslI CAYNNNNRTG 4 cut(s) 80, 341, 965, 1267
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 2 cut(s) 1047, 1346
MspR9I CCNGG 2 cut(s) 455, 1151
MunI CAATTG 1 cut(s) 1225
MvaI CCWGG 2 cut(s) 455, 1151
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 9 cut(s) 11, 284, 548, 663, 689, 854, 1256, 1265, 1351
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 1252
NdeII GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
NheI GCTAGC 2 cut(s) 481, 485
NlaIII CATG 7 cut(s) 97, 340, 583, 976, 1180, 1220, 1272
NlaIV GGNNCC 4 cut(s) 552, 587, 1281, 1299
NmuCI GTSAC 3 cut(s) 55, 139, 764
OliI CACNNNNGTG 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 1319
PceI AGGCCT 2 cut(s) 351, 910
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 3 cut(s) 126, 463, 496
PleI GAGTC 3 cut(s) 160, 199, 706
PpsI GAGTC 3 cut(s) 160, 199, 706
Psp1406I AACGTT 1 cut(s) 816
Psp6I CCWGG 2 cut(s) 453, 1149
PspEI GGTNACC 1 cut(s) 764
PspGI CCWGG 2 cut(s) 453, 1149
PspN4I GGNNCC 4 cut(s) 552, 587, 1281, 1299
PspPI GGNCC 1 cut(s) 1280
PsuI RGATCY 3 cut(s) 1230, 1308, 1323
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 2 cut(s) 990, 1132
RsaNI GTAC 2 cut(s) 989, 1131
RseI CAYNNNNRTG 4 cut(s) 80, 341, 965, 1267
SaqAI TTAA 2 cut(s) 791, 1056
Sau3AI GATC 9 cut(s) 118, 408, 648, 969, 1202, 1230, 1308, 1323, 1339
Sau96I GGNCC 1 cut(s) 1280
ScaI AGTACT 1 cut(s) 990
SchI GAGTC 3 cut(s) 161, 199, 706
ScrFI CCNGG 2 cut(s) 455, 1151
SduI GDGCHC 1 cut(s) 574
SfaNI GCATC 3 cut(s) 296, 835, 969
Sfr274I CTCGAG 1 cut(s) 1319
SinI GGWCC 1 cut(s) 1280
SlaI CTCGAG 1 cut(s) 1319
SmiMI CAYNNNNRTG 4 cut(s) 80, 341, 965, 1267
SmlI CTYRAG 1 cut(s) 1319
SmoI CTYRAG 1 cut(s) 1319
Sse9I AATT 5 cut(s) 227, 317, 745, 1225, 1328
SseBI AGGCCT 2 cut(s) 351, 910
SsiI CCGC 6 cut(s) 86, 99, 275, 542, 657, 720
SspI AATATT 1 cut(s) 1113
SspMI CTAG 5 cut(s) 312, 482, 486, 539, 755
StuI AGGCCT 2 cut(s) 351, 910
StyD4I CCNGG 2 cut(s) 453, 1149
StyI CCWWGG 2 cut(s) 93, 1071
TaaI ACNGT 4 cut(s) 61, 307, 1039, 1090
TaiI ACGT 4 cut(s) 260, 819, 870, 1364
TaqI TCGA 2 cut(s) 325, 1320
TasI AATT 5 cut(s) 227, 317, 745, 1225, 1328
TatI WGTACW 1 cut(s) 988
TauI GCSGC 4 cut(s) 89, 278, 660, 722
TfiI GAWTC 3 cut(s) 126, 463, 496
Tru1I TTAA 2 cut(s) 791, 1056
Tru9I TTAA 2 cut(s) 791, 1056
TscAI CASTG 3 cut(s) 646, 961, 1057
TseFI GTSAC 3 cut(s) 55, 139, 764
TseI GCWGC 6 cut(s) 89, 241, 689, 857, 949, 1259
Tsp45I GTSAC 3 cut(s) 55, 139, 764
TspDTI ATGAA 6 cut(s) 60, 209, 488, 1032, 1193, 1233
TspGWI ACGGA 2 cut(s) 791, 1272
TspRI CASTG 3 cut(s) 646, 961, 1057
VpaK11BI GGWCC 1 cut(s) 1280
XapI RAATTY 3 cut(s) 227, 317, 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XhoI CTCGAG 1 cut(s) 1319
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 5 cut(s) 312, 482, 486, 539, 755
ZrmI AGTACT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.