Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002419

Physical Location & Seq

Genomic Coordinates Forward (+)

77302251 .. 77302614

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0576600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAATAGTACAAAAGCTAGAGAGCAAAGTTATCTGTCTAAGAACTTGCCACAAATAGTCTTACGAAACAATAGAATTGATGGCATTATACCTAGTGAGATTGGCCAATTGCAGCTTCTCCATGCTTTGGATCTCAGTGTTAACCATTTTTCCGGCAACATTCCTGACCAAATTTCCAACCTTGAGAACTTGGAGACATTAGATCTCTCCGTGATTAATTTGTCTGCGAGATGTTGGGAAATTAATCCCCCGCCATGCAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

88

Amino Acids

9.93

Weight (kDa)

5.51

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	15 - 70	2.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50310 AT1G50310 AT3G19940 AT5G23270
fragaria_vesca	FvH4_2g06240 FvH4_2g06241 FvH4_2g06250
malus_domestica	MD00G1119600.v1.1 MD13G1238600.v1.1 MD13G1238700.v1.1 MD15G1433200.v1.1 MD16G1243500.v1.1
prunus_persica	Prupe.1G070800_v2.0.a1 Prupe.1G070900_v2.0.a1
pyrus_communis	pycom13g21110 pycom13g21120
rosa_chinensis	RchiOBHm_Chr4g0398701 RchiOBHm_Chr6g0256931 RchiOBHm_Chr6g0256941
rosa_laevigata	RLG00000009330 RLG00000014660 RLG00000014663
rosa_multiflora	Rmu_sc0000659.1_g000045 Rmu_sc0008600.1_g000002 Rmu_sc0017404.1_g000011
rosa_roxburghii	Rroxscaffold_5G00343660 Rroxscaffold_7G00208330 Rroxscaffold_7G00208350
rosa_rugosa	Rorug04G0010900 Rorug05G0576400 Rorug05G0576500 Rorug05G0576600
rosa_samantha	Rh4DG080100 Rh6AG095000 Rh6BG086100 Rh6BG086200 Rh6CG082200 Rh6DG077900
rosa_wichuraiana	Rw4G007340 Rw6G008110 Rw6G008130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	2 cut(s)	10, 263
AfiI	CCNNNNNNNGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	17, 115
AluI	AGCT	2 cut(s)	17, 115
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	171
AseI	ATTAAT	2 cut(s)	216, 243
BalI	TGGCCA	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	18, 93, 265
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmcAI	AGTACT	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	130, 202
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	147
BspPI	GGATC	1 cut(s)	138
BssMI	GATC	2 cut(s)	130, 202
BstDEI	CTNAG	2 cut(s)	39, 134
BstKTI	GATC	2 cut(s)	133, 205
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	130, 202
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	130, 202
BstYI	RGATCY	2 cut(s)	130, 202
BsuRI	GGCC	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	9, 262
CviAII	CATG	2 cut(s)	122, 255
CviJI	RGCY	3 cut(s)	17, 105, 115
CviKI_1	RGCY	3 cut(s)	17, 105, 115
CviQI	GTAC	2 cut(s)	9, 262
DdeI	CTNAG	2 cut(s)	39, 134
DpnI	GATC	2 cut(s)	132, 204
DpnII	GATC	2 cut(s)	130, 202
EaeI	YGGCCR	1 cut(s)	103
FaeI	CATG	2 cut(s)	125, 258
FaiI	YATR	3 cut(s)	89, 123, 256
FatI	CATG	2 cut(s)	121, 254
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	3 cut(s)	18, 93, 265
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	125, 258
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	112, 258
HpyF3I	CTNAG	2 cut(s)	39, 134
Hsp92II	CATG	2 cut(s)	125, 258
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	130, 202
LpnPI	CCDG	2 cut(s)	166, 177
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	3 cut(s)	18, 93, 265
MalI	GATC	2 cut(s)	132, 204
MboI	GATC	2 cut(s)	130, 202
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	2 cut(s)	130, 202
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	5 cut(s)	75, 107, 171, 217, 240
MluNI	TGGCCA	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	3 cut(s)	141, 216, 243
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	107
NdeII	GATC	2 cut(s)	130, 202
NlaIII	CATG	2 cut(s)	125, 258
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	114
PshBI	ATTAAT	2 cut(s)	216, 243
PsuI	RGATCY	2 cut(s)	130, 202
RsaI	GTAC	2 cut(s)	10, 263
RsaNI	GTAC	2 cut(s)	9, 262
SaqAI	TTAA	3 cut(s)	141, 216, 243
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	130, 202
ScaI	AGTACT	1 cut(s)	263
SetI	ASST	4 cut(s)	19, 94, 117, 183
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	5 cut(s)	75, 107, 171, 217, 240
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	18, 93, 265
TasI	AATT	5 cut(s)	75, 107, 171, 217, 240
TatI	WGTACW	2 cut(s)	8, 261
Tru1I	TTAA	3 cut(s)	141, 216, 243
Tru9I	TTAA	3 cut(s)	141, 216, 243
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	127
VspI	ATTAAT	2 cut(s)	216, 243
XapI	RAATTY	1 cut(s)	171
XspI	CTAG	3 cut(s)	18, 93, 265
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.