Rh6BG086100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
13417507 .. 13425405
7899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG086100.1

Sequence Viewer

Length: 1548 bp
ATGGCAGGGGGTACGTTTAACATTGAGGGTGAGGGTAAAAATTATGAAGGAAGGATCACTCTCTTTGTGATCTTCACCTGTGTAGTGGCCGCCTCCGGCGGTCTCCTCTTCGGATATGATATCGGAATATCAGGAGGAGTGACTTCCATGGACCCATTCTTAAGCAAGTTCTTCCCATCCGTCGAGAAGAAGATGAAGAATTCCGGTGATGGAAACATGTATTGCAAATTCGAAAGCCAGATCCTTACATTGTTCACCTCTTCACTCTACATTGCAGCGTTGGTAGCTTCCTTCTTTGCTTCAGTTGTAACCAGGAAATATGGTCGGAAAATCTCCATGTTTTTTGCAGGCTGTGTTTTCCTTCTAGGTGCTTTCTTAAATGGTGTTGCCAATAGCATTGTGCTTCTAATCCTCGGTCGTTTGTCTCTTGGTGTAGGTGTTGGATTCGCTAACCAGGCTGTCCCTGTTTATTTAGCGGAGATGGCTCCAGCAAAGTTTAGAGGAGCACTTAACATTGGCTTCACAATAGCTTGCACCATTGGTATTCTAGTGGCCAATCTTGTTAACTATGGCACATCAAAGATAAGGAGTGGACAAGGGTGGAGAGTTTCTCTAGCTCTTGCAGGCGTCCCGGCATTAATGATGATTATAGGCTCATTCTTTTTACCCGATACTCCAAATTCCATTCTAGCGAGAGGTCACGCAAAGGAGGCCAAGAAAGTGTTACAAAAAGTTCGTGGCACTGAAAATGTCGACGAAGAGTTCCAAGACCTTATTCAAGCAAGTGAGGCTGCAAAGAAGGTGGAGCACCCATGGACTAACATCACTCAACCGAGATATAGGCCTCAACTTGTTATTTGCTGTCTCATTCCATTATTCCAACAGCTTACCGGCATCAATGTGATCATGTTCTATGCACCAGTTATTTTCAAAACTTTGGGTATGGGAGATGATGCTTCCCTCATCTCTGCAGTCATCACCGGTTCTGTTAATGTCGTATCTACCATCGTGTCAATTATCACAGTCGATAGGCTTGGAAGAAGGGTGTTGTTCCTTGAAGGCGGAGTGCAAATGGTCGTGTGCCAGATTGCAGTTGCAATCCTGGTAGGGATGAAGTTCAGTGTGAGCGGAGTAGGATCACTGACAAAAGGCGAAGCTAATTTCCTCGTGTTCTTGATTTGTATGTATGTTGCGGGCTTTGCATGGTCTTGGGGTCCGTTGGGGTGGTTGGTGCCTAGTGAGATTTGTCCTTTAGAGATCCGATCTGCTGGGCAAGCCATCAATGTGTCGATTAACATGTTGTTCACTTTTGTCATTGGGCAAGCTTTCCTAACCATGCTTTGCTCTATGAAGTTTGGGTTGTTCTTCTTCTTTGCTGGCTTTGTAATTATCATGACCATATTTGTCGCCTTCTTCATACCCGAAACAAAGAATGTCCCAATCGAAGAGATTAACACCGTGTGGAAAGCACACTGGTTTTGGGGCAAGTACATCCCAGATGATGCTATCATTGATGGTACACACAACAAAGGCAAAGTTGATTTATAG

Protein Analysis

515

Amino Acids

55.89

Weight (kDa)

8.89

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 27 - 488 6e-129 Sugar (and other) transporter
MFS_1 PF07690 83 - 437 4.9e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1231
AccBSI CCGCTC 1 cut(s) 1128
AccI GTMKAC 1 cut(s) 753
AciI CCGC 6 cut(s) 90, 99, 476, 1062, 1128, 1193
AclWI GGATC 4 cut(s) 62, 235, 1144, 1252
AcoI YGGCCR 2 cut(s) 87, 552
AcsI RAATTY 3 cut(s) 199, 227, 679
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 627
AdeI CACNNNGTG 1 cut(s) 1461
AfaI GTAC 3 cut(s) 13, 1490, 1519
AflII CTTAAG 1 cut(s) 160
AflIII ACRYGT 2 cut(s) 216, 1296
AgeI ACCGGT 1 cut(s) 980
AgsI TTSAA 3 cut(s) 779, 931, 1058
AjnI CCWGG 3 cut(s) 311, 453, 1101
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
AluBI AGCT 6 cut(s) 287, 530, 617, 886, 1157, 1325
AluI AGCT 6 cut(s) 287, 530, 617, 886, 1157, 1325
Alw21I GWGCWC 2 cut(s) 508, 810
Alw26I GTCTC 3 cut(s) 107, 429, 869
AlwI GGATC 4 cut(s) 62, 235, 1144, 1252
AoxI GGCC 4 cut(s) 87, 552, 711, 842
ApeKI GCWGC 2 cut(s) 275, 791
ApoI RAATTY 3 cut(s) 199, 227, 679
AseI ATTAAT 1 cut(s) 638
AsiGI ACCGGT 1 cut(s) 980
AspS9I GGNCC 2 cut(s) 151, 1214
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 5 cut(s) 41, 67, 218, 247, 970
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 2 cut(s) 151, 1214
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 1231
BauI CACGAG 1 cut(s) 1166
Bbv12I GWGCWC 2 cut(s) 508, 810
BbvI GCAGC 2 cut(s) 287, 778
BccI CCATC 6 cut(s) 184, 203, 475, 1013, 1286, 1508
BciT130I CCWGG 3 cut(s) 313, 455, 1103
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 3 cut(s) 107, 429, 869
BfaI CTAG 5 cut(s) 365, 548, 614, 689, 1236
BfmI CTRYAG 1 cut(s) 969
BfrI CTTAAG 1 cut(s) 160
BisI GCNGC 3 cut(s) 90, 276, 792
BlsI GCNGC 3 cut(s) 91, 277, 793
Bme1390I CCNGG 4 cut(s) 313, 455, 632, 1103
Bme18I GGWCC 2 cut(s) 151, 1214
BmgT120I GGNCC 2 cut(s) 151, 1214
BmiI GGNNCC 4 cut(s) 153, 486, 1215, 1233
BmrFI CCNGG 4 cut(s) 313, 455, 632, 1103
BmsI GCATC 3 cut(s) 903, 943, 1492
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 147, 412, 812
BsaWI WCCGGW 2 cut(s) 203, 980
Bse118I RCCGGY 2 cut(s) 890, 980
Bse1I ACTGG 2 cut(s) 920, 1478
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 3 cut(s) 313, 455, 1103
BseDI CCNNGG 3 cut(s) 147, 412, 812
BseGI GGATG 3 cut(s) 176, 1116, 1491
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 920, 1478
BseRI GAGGAG 3 cut(s) 95, 150, 516
BseXI GCAGC 2 cut(s) 287, 778
BseYI CCCAGC 1 cut(s) 1268
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 4 cut(s) 89, 554, 713, 844
BshNI GGYRCC 1 cut(s) 1231
BshTI ACCGGT 1 cut(s) 980
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 2 cut(s) 508, 810
BsiSI CCGG 5 cut(s) 96, 204, 632, 891, 981
BslFI GGGAC 3 cut(s) 446, 614, 1421
BsmAI GTCTC 3 cut(s) 107, 429, 869
BsmFI GGGAC 3 cut(s) 446, 614, 1421
BsnI GGCC 4 cut(s) 89, 554, 713, 844
Bso31I GGTCTC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 508, 810
Bsp143I GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
Bsp19I CCATGG 2 cut(s) 147, 812
BspACI CCGC 6 cut(s) 90, 99, 476, 1062, 1128, 1193
BspANI GGCC 4 cut(s) 89, 554, 713, 844
BspHI TCATGA 1 cut(s) 1392
BspLI GGNNCC 4 cut(s) 153, 486, 1215, 1233
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 4 cut(s) 62, 235, 1144, 1252
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 1231
BspTI CTTAAG 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 1128
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 890, 980
BsrI ACTGG 2 cut(s) 920, 1478
BssAI RCCGGY 2 cut(s) 890, 980
BssECI CCNNGG 3 cut(s) 147, 412, 812
BssMI GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
BssNI GRCGYC 1 cut(s) 627
BssSI CACGAG 1 cut(s) 1166
BssT1I CCWWGG 2 cut(s) 147, 812
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 3 cut(s) 313, 455, 1103
Bst4CI ACNGT 2 cut(s) 1024, 1459
Bst6I CTCTTC 4 cut(s) 113, 265, 753, 1440
BstACI GRCGYC 1 cut(s) 627
BstAFI CTTAAG 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 7 cut(s) 349, 532, 625, 1195, 1275, 1323, 1378
BstDSI CCRYGG 2 cut(s) 147, 812
BstF5I GGATG 3 cut(s) 176, 1116, 1491
BstKTI GATC 7 cut(s) 57, 72, 243, 906, 1139, 1260, 1265
BstMAI GTCTC 3 cut(s) 107, 429, 869
BstMBI GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 7 cut(s) 284, 455, 482, 710, 788, 1199, 1274
BstNI CCWGG 3 cut(s) 313, 455, 1103
BstNSI RCATGY 2 cut(s) 220, 1300
BstSCI CCNGG 4 cut(s) 311, 453, 630, 1101
BstSFI CTRYAG 1 cut(s) 969
BstV1I GCAGC 2 cut(s) 287, 778
BstX2I RGATCY 2 cut(s) 240, 1257
BstYI RGATCY 2 cut(s) 240, 1257
BsuRI GGCC 4 cut(s) 89, 554, 713, 844
BtgI CCRYGG 2 cut(s) 147, 812
BtsCI GGATG 3 cut(s) 176, 1116, 1491
BtsIMutI CAGTG 4 cut(s) 741, 1126, 1139, 1471
Cac8I GCNNGC 7 cut(s) 349, 532, 625, 1195, 1275, 1323, 1378
CciI TCATGA 1 cut(s) 1392
Cfr10I RCCGGY 2 cut(s) 890, 980
Cfr13I GGNCC 2 cut(s) 151, 1214
CseI GACGC 1 cut(s) 616
Csp6I GTAC 3 cut(s) 12, 1489, 1518
CspAI ACCGGT 1 cut(s) 980
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviAII CATG 9 cut(s) 148, 217, 337, 813, 907, 1203, 1297, 1336, 1393
CviQI GTAC 3 cut(s) 12, 1489, 1518
DpnI GATC 7 cut(s) 56, 71, 242, 905, 1138, 1259, 1264
DpnII GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
DraIII CACNNNGTG 1 cut(s) 1461
EaeI YGGCCR 2 cut(s) 87, 552
Eam1104I CTCTTC 4 cut(s) 113, 265, 753, 1440
EarI CTCTTC 4 cut(s) 113, 265, 753, 1440
EciI GGCGGA 1 cut(s) 1077
Eco130I CCWWGG 2 cut(s) 147, 812
Eco147I AGGCCT 1 cut(s) 844
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 151, 1214
Eco57I CTGAAG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 311, 453, 1101
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 147, 812
ErhI CCWWGG 2 cut(s) 147, 812
FaeI CATG 9 cut(s) 151, 220, 340, 816, 910, 1206, 1300, 1339, 1396
FaqI GGGAC 3 cut(s) 446, 614, 1421
FatI CATG 9 cut(s) 147, 216, 336, 812, 906, 1202, 1296, 1335, 1392
FauI CCCGC 1 cut(s) 1186
FbaI TGATCA 1 cut(s) 903
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 90, 276, 792
FokI GGATG 3 cut(s) 163, 1123, 1478
Fsp4HI GCNGC 3 cut(s) 90, 276, 792
FspBI CTAG 5 cut(s) 365, 548, 614, 689, 1236
GluI GCNGC 3 cut(s) 90, 276, 792
GsaI CCCAGC 1 cut(s) 1272
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 4 cut(s) 89, 554, 713, 844
HapII CCGG 5 cut(s) 96, 204, 632, 891, 981
HgaI GACGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 9 cut(s) 151, 220, 340, 816, 910, 1206, 1300, 1339, 1396
HincII GTYRAC 2 cut(s) 565, 754
HindII GTYRAC 2 cut(s) 565, 754
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 1 cut(s) 444
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 5 cut(s) 96, 204, 632, 891, 981
HphI GGTGA 5 cut(s) 41, 67, 218, 247, 970
Hpy166II GTNNAC 6 cut(s) 255, 565, 593, 754, 1305, 1520
Hpy188I TCNGA 4 cut(s) 113, 125, 327, 1262
Hpy188III TCNNGA 4 cut(s) 132, 184, 1174, 1393
Hpy8I GTNNAC 6 cut(s) 255, 565, 593, 754, 1305, 1520
Hpy99I CGWCG 2 cut(s) 185, 758
HpyAV CCTTC 8 cut(s) 41, 45, 301, 371, 793, 1035, 1052, 1420
HpyCH4III ACNGT 2 cut(s) 1024, 1459
HpyCH4IV ACGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 455, 482, 710, 788, 1199, 1274
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 9 cut(s) 151, 220, 340, 816, 910, 1206, 1300, 1339, 1396
Ksp22I TGATCA 1 cut(s) 903
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
LmnI GCTCC 3 cut(s) 490, 503, 805
Lsp1109I GCAGC 2 cut(s) 287, 778
LweI GCATC 3 cut(s) 903, 943, 1492
MaeI CTAG 5 cut(s) 365, 548, 614, 689, 1236
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 4 cut(s) 139, 307, 698, 723
MalI GATC 7 cut(s) 56, 71, 242, 905, 1138, 1259, 1264
MbiI CCGCTC 1 cut(s) 1128
MboI GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
MflI RGATCY 2 cut(s) 240, 1257
MhlI GDGCHC 2 cut(s) 508, 810
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 7 cut(s) 40, 199, 227, 679, 1014, 1159, 1386
MluNI TGGCCA 1 cut(s) 554
MmeI TCCRAC 3 cut(s) 305, 421, 904
Mox20I TGGCCA 1 cut(s) 554
MscI TGGCCA 1 cut(s) 554
MseI TTAA 9 cut(s) 18, 161, 377, 510, 564, 638, 990, 1293, 1452
MslI CAYNNNNRTG 2 cut(s) 899, 1283
Msp20I TGGCCA 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 5 cut(s) 96, 204, 632, 891, 981
MspR9I CCNGG 4 cut(s) 313, 455, 632, 1103
MvaI CCWGG 3 cut(s) 313, 455, 1103
MwoI GCNNNNNNNGC 7 cut(s) 284, 455, 482, 710, 788, 1199, 1274
NciI CCSGG 1 cut(s) 632
NcoI CCATGG 2 cut(s) 147, 812
NdeII GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
NlaIII CATG 9 cut(s) 151, 220, 340, 816, 910, 1206, 1300, 1339, 1396
NlaIV GGNNCC 4 cut(s) 153, 486, 1215, 1233
NmuCI GTSAC 2 cut(s) 139, 698
NspI RCATGY 2 cut(s) 220, 1300
NspV TTCGAA 1 cut(s) 231
PagI TCATGA 1 cut(s) 1392
PceI AGGCCT 1 cut(s) 844
PciI ACATGT 2 cut(s) 216, 1296
PfeI GAWTC 1 cut(s) 444
PinAI ACCGGT 1 cut(s) 980
PkrI GCNGC 3 cut(s) 91, 277, 793
PscI ACATGT 2 cut(s) 216, 1296
PshBI ATTAAT 1 cut(s) 638
Psp6I CCWGG 3 cut(s) 311, 453, 1101
PspFI CCCAGC 1 cut(s) 1268
PspGI CCWGG 3 cut(s) 311, 453, 1101
PspN4I GGNNCC 4 cut(s) 153, 486, 1215, 1233
PspPI GGNCC 2 cut(s) 151, 1214
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 2 cut(s) 240, 1257
RsaI GTAC 3 cut(s) 13, 1490, 1519
RsaNI GTAC 3 cut(s) 12, 1489, 1518
RseI CAYNNNNRTG 2 cut(s) 899, 1283
SalI GTCGAC 1 cut(s) 752
SaqAI TTAA 9 cut(s) 18, 161, 377, 510, 564, 638, 990, 1293, 1452
SatI GCNGC 3 cut(s) 90, 276, 792
Sau3AI GATC 7 cut(s) 54, 69, 240, 903, 1136, 1257, 1262
Sau96I GGNCC 2 cut(s) 151, 1214
ScrFI CCNGG 4 cut(s) 313, 455, 632, 1103
SduI GDGCHC 2 cut(s) 508, 810
SfaNI GCATC 3 cut(s) 903, 943, 1492
SfcI CTRYAG 1 cut(s) 969
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 2 cut(s) 151, 1214
SmiMI CAYNNNNRTG 2 cut(s) 899, 1283
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 7 cut(s) 40, 199, 227, 679, 1014, 1159, 1386
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 6 cut(s) 90, 99, 476, 1062, 1128, 1193
SspMI CTAG 5 cut(s) 365, 548, 614, 689, 1236
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 4 cut(s) 311, 453, 630, 1101
StyI CCWWGG 2 cut(s) 147, 812
TaaI ACNGT 2 cut(s) 1024, 1459
TaiI ACGT 1 cut(s) 17
TaqI TCGA 6 cut(s) 183, 231, 753, 1026, 1289, 1443
TaqII GACCGA 1 cut(s) 404
TasI AATT 7 cut(s) 40, 199, 227, 679, 1014, 1159, 1386
TatI WGTACW 1 cut(s) 1488
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 444
Tru1I TTAA 9 cut(s) 18, 161, 377, 510, 564, 638, 990, 1293, 1452
Tru9I TTAA 9 cut(s) 18, 161, 377, 510, 564, 638, 990, 1293, 1452
TscAI CASTG 4 cut(s) 748, 1126, 1146, 1478
TseFI GTSAC 2 cut(s) 139, 698
TseI GCWGC 2 cut(s) 275, 791
Tsp45I GTSAC 2 cut(s) 139, 698
TspDTI ATGAA 5 cut(s) 60, 209, 1127, 1364, 1405
TspGWI ACGGA 2 cut(s) 169, 1206
TspRI CASTG 4 cut(s) 748, 1126, 1146, 1478
Vha464I CTTAAG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 151, 1214
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 3 cut(s) 199, 227, 679
XceI RCATGY 2 cut(s) 220, 1300
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 5 cut(s) 365, 548, 614, 689, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.