AT3G19940
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6938211 .. 6939975
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19940.1

Sequence Viewer

Length: 1545 bp
ATGGCAGGAGGAGCTTTTGTATCAGAAGGAGGAGGTGGTGGAAGAAGTTATGAAGGAGGAGTCACCGCATTCGTTATCATGACATGTATCGTCGCCGCCATGGGAGGTCTGCTCTTTGGTTATGACCTTGGAATCTCAGGAGGTGTTACATCAATGGAAGAGTTTCTTACCAAGTTCTTCCCTCAAGTAGAGAGCCAGATGAAAAAGGCGAAGCACGACACGGCTTACTGTAAATTTGATAACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTCGCAGCTCTTGTAGCTTCCTTTATGGCTTCAGTTATCACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATTGGTGGACTTGCTTTCCTCATCGGTGCACTTTTTAACGCATTTGCCGTTAATGTTTCAATGCTCATCATCGGTAGACTGTTGCTTGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTGTACCTATCTGAAATGGCTCCAGCGAAGATAAGAGGAGCTTTAAACATCGGTTTTCAGATGGCTATAACCATTGGAATCCTAGTGGCGAATCTGATTAACTATGGAACATCAAAGATGGCTCAACATGGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTTATGGTGATTGGATCATTTATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGGAAGCAAAACAAATGTTGAAGAAGATACGTGGAGCTGACAATGTTGATCATGAGTTTCAAGATCTCATTGATGCTGTTGAAGCTGCCAAAAAGGTGGAAAATCCATGGAAGAACATCATGGAGAGTAAATATAGACCAGCTTTAATCTTCTGCTCGGCCATTCCCTTTTTCCAACAGATCACTGGAATCAATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTGGTTTTGGTGATGATGCTGCTCTTATGTCTGCTGTTATAACCGGTGTTGTCAACATGCTTTCAACCTTTGTCTCAATTTACGCGGTTGATAGATATGGTAGAAGGTTGCTTTTCCTCGAAGGTGGCATTCAAATGTTCATTTGTCAGCTTCTTGTTGGTTCTTTCATCGGTGCAAGATTCGGAACCTCAGGAACCGGAACATTGACGCCAGCAACAGCAGACTGGATTCTTGCTTTCATATGTGTGTACGTTGCAGGATTTGCATGGTCATGGGGTCCATTGGGATGGTTGGTACCGAGTGAGATATGTCCATTGGAAATTAGACCAGCGGGACAAGCCATCAACGTCTCGGTCAACATGTTCTTCACTTTTCTCATTGGTCAATTCTTTTTGACAATGCTTTGTCACATGAAGTTTGGTCTATTCTACTTCTTTGCAAGCATGGTTGCGATCATGACGGTTTTCATTTACTTTTTGTTGCCGGAGACCAAAGGTGTTCCTATTGAAGAGATGGGAAGAGTTTGGAAGCAACATTGGTTCTGGAAAAAGTATATCCCAGAAGATGCTATTATTGGTGGACATGATGACAACAATACCAATTAA

Protein Analysis

514

Amino Acids

56.2

Weight (kDa)

8.35

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 29 - 489 3.1e-132 Sugar (and other) transporter
MFS_1 PF07690 44 - 435 7.1e-27 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
Acc65I GGTACC 1 cut(s) 1234
AccB1I GGYRCC 1 cut(s) 1234
AccI GTMKAC 2 cut(s) 424, 464
AccII CGCG 1 cut(s) 1025
AciI CCGC 4 cut(s) 66, 96, 1025, 1271
AclWI GGATC 1 cut(s) 664
AcoI YGGCCR 1 cut(s) 867
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 1148
AfaI GTAC 3 cut(s) 476, 1190, 1236
AflIII ACRYGT 2 cut(s) 83, 1299
AgeI ACCGGT 1 cut(s) 983
AgsI TTSAA 8 cut(s) 408, 730, 770, 791, 934, 1005, 1073, 1448
AhdI GACNNNNNGTC 1 cut(s) 335
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 4 cut(s) 343, 1018, 1294, 1421
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 1 cut(s) 664
Ama87I CYCGRG 1 cut(s) 692
AoxI GGCC 1 cut(s) 867
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 4 cut(s) 281, 626, 794, 959
ApoI RAATTY 1 cut(s) 233
AsiGI ACCGGT 1 cut(s) 983
Asp700I GAANNNNTTC 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 1234
AspS9I GGNCC 1 cut(s) 1217
AsuHPI GGTGA 3 cut(s) 55, 661, 962
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 1 cut(s) 1217
AxyI CCTNAGG 1 cut(s) 1129
BaeGI GKGCMC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 1234
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 4 cut(s) 293, 638, 781, 946
BccI CCATC 6 cut(s) 526, 583, 597, 1221, 1289, 1447
BceAI ACGGC 2 cut(s) 237, 380
BclI TGATCA 1 cut(s) 757
BcoDI GTCTC 4 cut(s) 343, 1018, 1294, 1421
BfaI CTAG 2 cut(s) 318, 554
BglII AGATCT 1 cut(s) 772
BisI GCNGC 5 cut(s) 96, 282, 627, 795, 960
BlsI GCNGC 5 cut(s) 97, 283, 628, 796, 961
Bme18I GGWCC 1 cut(s) 1217
BmeRI GACNNNNNGTC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 1217
BmiI GGNNCC 5 cut(s) 492, 1126, 1135, 1218, 1236
BmsI GCATC 4 cut(s) 678, 772, 946, 1495
BplI GAGNNNNNCTC 2 cut(s) 96, 128
BpmI CTGGAG 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 1148
BsaI GGTCTC 1 cut(s) 1421
BsaJI CCNNGG 3 cut(s) 99, 127, 815
BsaWI WCCGGW 3 cut(s) 469, 983, 1136
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 2 cut(s) 898, 1169
Bse21I CCTNAGG 1 cut(s) 1129
BseDI CCNNGG 3 cut(s) 99, 127, 815
BseGI GGATG 2 cut(s) 608, 1232
BseMII CTCAG 2 cut(s) 150, 1143
BseNI ACTGG 2 cut(s) 898, 1169
BseRI GAGGAG 4 cut(s) 24, 45, 72, 522
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 4 cut(s) 293, 638, 781, 946
Bsh1236I CGCG 1 cut(s) 1025
BshFI GGCC 1 cut(s) 869
BshNI GGYRCC 1 cut(s) 1234
BshTI ACCGGT 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 4 cut(s) 470, 984, 1137, 1424
BslFI GGGAC 1 cut(s) 1287
BsmAI GTCTC 4 cut(s) 343, 1018, 1294, 1421
BsmBI CGTCTC 1 cut(s) 1294
BsmFI GGGAC 1 cut(s) 1287
BsmI GAATGC 2 cut(s) 68, 1068
BsnI GGCC 1 cut(s) 869
Bso31I GGTCTC 1 cut(s) 1421
BsoBI CYCGRG 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 5 cut(s) 656, 757, 772, 888, 1392
Bsp19I CCATGG 2 cut(s) 99, 815
BspACI CCGC 4 cut(s) 66, 96, 1025, 1271
BspANI GGCC 1 cut(s) 869
BspCNI CTCAG 2 cut(s) 149, 1142
BspFNI CGCG 1 cut(s) 1025
BspHI TCATGA 3 cut(s) 78, 760, 1395
BspLI GGNNCC 5 cut(s) 492, 1126, 1135, 1218, 1236
BspPI GGATC 1 cut(s) 664
BspT107I GGYRCC 1 cut(s) 1234
BspTNI GGTCTC 1 cut(s) 1421
BsrFI RCCGGY 1 cut(s) 983
BsrI ACTGG 2 cut(s) 898, 1169
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 3 cut(s) 99, 127, 815
BssMI GATC 5 cut(s) 656, 757, 772, 888, 1392
BssNI GRCGYC 1 cut(s) 1148
BssT1I CCWWGG 3 cut(s) 99, 127, 815
Bst4CI ACNGT 3 cut(s) 230, 429, 1402
Bst6I CTCTTC 4 cut(s) 153, 935, 1443, 1453
BstACI GRCGYC 1 cut(s) 1148
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 1152, 1381
BstDEI CTNAG 2 cut(s) 136, 1129
BstDSI CCRYGG 2 cut(s) 99, 815
BstF5I GGATG 2 cut(s) 608, 1232
BstFNI CGCG 1 cut(s) 1025
BstKTI GATC 5 cut(s) 659, 760, 775, 891, 1395
BstMAI GTCTC 4 cut(s) 343, 1018, 1294, 1421
BstMBI GATC 5 cut(s) 656, 757, 772, 888, 1392
BstMWI GCNNNNNNNGC 6 cut(s) 11, 290, 635, 791, 1202, 1277
BstNSI RCATGY 3 cut(s) 87, 1000, 1303
BstSLI GKGCMC 1 cut(s) 379
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 4 cut(s) 293, 638, 781, 946
BstX2I RGATCY 1 cut(s) 772
BstXI CCANNNNNNTGG 2 cut(s) 805, 1227
BstYI RGATCY 1 cut(s) 772
Bsu36I CCTNAGG 1 cut(s) 1129
BsuRI GGCC 1 cut(s) 869
BtgI CCRYGG 2 cut(s) 99, 815
BtsCI GGATG 2 cut(s) 608, 1232
BtsIMutI CAGTG 1 cut(s) 891
Cac8I GCNNGC 2 cut(s) 1152, 1381
CciI TCATGA 3 cut(s) 78, 760, 1395
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 1 cut(s) 1217
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 3 cut(s) 475, 1189, 1235
CspAI ACCGGT 1 cut(s) 983
CviQI GTAC 3 cut(s) 475, 1189, 1235
DdeI CTNAG 2 cut(s) 136, 1129
DpnI GATC 5 cut(s) 658, 759, 774, 890, 1394
DpnII GATC 5 cut(s) 656, 757, 772, 888, 1392
DraI TTTAAA 1 cut(s) 516
DriI GACNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 867
Eam1104I CTCTTC 4 cut(s) 153, 935, 1443, 1453
Eam1105I GACNNNNNGTC 1 cut(s) 335
EarI CTCTTC 4 cut(s) 153, 935, 1443, 1453
Eco130I CCWWGG 3 cut(s) 99, 127, 815
Eco31I GGTCTC 1 cut(s) 1421
Eco47I GGWCC 1 cut(s) 1217
Eco57I CTGAAG 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 1129
Eco88I CYCGRG 1 cut(s) 692
EcoT14I CCWWGG 3 cut(s) 99, 127, 815
ErhI CCWWGG 3 cut(s) 99, 127, 815
Esp3I CGTCTC 1 cut(s) 1294
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 496, 528
FaqI GGGAC 1 cut(s) 1287
FauI CCCGC 1 cut(s) 1264
FauNDI CATATG 1 cut(s) 1181
FbaI TGATCA 1 cut(s) 757
FblI GTMKAC 2 cut(s) 424, 464
Fnu4HI GCNGC 5 cut(s) 96, 282, 627, 795, 960
FokI GGATG 2 cut(s) 615, 1239
Fsp4HI GCNGC 5 cut(s) 96, 282, 627, 795, 960
FspBI CTAG 2 cut(s) 318, 554
GluI GCNGC 5 cut(s) 96, 282, 627, 795, 960
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 869
HapII CCGG 4 cut(s) 470, 984, 1137, 1424
HgaI GACGC 1 cut(s) 1156
Hin1I GRCGYC 1 cut(s) 1148
HincII GTYRAC 2 cut(s) 994, 1297
HindII GTYRAC 2 cut(s) 994, 1297
HinfI GANTC 8 cut(s) 60, 132, 549, 562, 897, 937, 1119, 1168
HpaII CCGG 4 cut(s) 470, 984, 1137, 1424
HphI GGTGA 3 cut(s) 55, 661, 962
Hpy188I TCNGA 5 cut(s) 25, 484, 531, 567, 1124
Hpy188III TCNNGA 9 cut(s) 79, 138, 694, 761, 770, 934, 1131, 1396, 1483
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 20, 47, 1038, 1055
HpyCH4III ACNGT 3 cut(s) 230, 429, 1402
HpyCH4IV ACGT 4 cut(s) 331, 739, 1191, 1287
HpyCH4V TGCA 5 cut(s) 377, 1115, 1196, 1205, 1379
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 290, 635, 791, 1202, 1277
HpyF3I CTNAG 2 cut(s) 136, 1129
HpySE526I ACGT 4 cut(s) 331, 739, 1191, 1287
Hsp92I GRCGYC 1 cut(s) 1148
KpnI GGTACC 1 cut(s) 1238
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 5 cut(s) 656, 757, 772, 888, 1392
LmnI GCTCC 6 cut(s) 11, 255, 496, 509, 743, 925
Lsp1109I GCAGC 4 cut(s) 293, 638, 781, 946
LweI GCATC 4 cut(s) 678, 772, 946, 1495
MaeI CTAG 2 cut(s) 318, 554
MaeII ACGT 4 cut(s) 331, 739, 1191, 1287
MaeIII GTNAC 3 cut(s) 61, 145, 1346
MalI GATC 5 cut(s) 658, 759, 774, 890, 1394
MboI GATC 5 cut(s) 656, 757, 772, 888, 1392
MfeI CAATTG 1 cut(s) 254
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 6 cut(s) 233, 254, 1017, 1260, 1325, 1540
MlyI GAGTC 2 cut(s) 69, 931
MmeI TCCRAC 2 cut(s) 427, 907
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 6 cut(s) 384, 399, 515, 570, 854, 1543
MslI CAYNNNNRTG 4 cut(s) 1073, 1184, 1210, 1225
MspA1I CMGCKG 3 cut(s) 629, 638, 1271
MspI CCGG 4 cut(s) 470, 984, 1137, 1424
MunI CAATTG 1 cut(s) 254
Mva1269I GAATGC 2 cut(s) 68, 1068
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 6 cut(s) 11, 290, 635, 791, 1202, 1277
NcoI CCATGG 2 cut(s) 99, 815
NdeI CATATG 1 cut(s) 1181
NdeII GATC 5 cut(s) 656, 757, 772, 888, 1392
NlaIV GGNNCC 5 cut(s) 492, 1126, 1135, 1218, 1236
NmeAIII GCCGAG 1 cut(s) 845
NmuCI GTSAC 2 cut(s) 61, 1346
NspI RCATGY 3 cut(s) 87, 1000, 1303
PaeR7I CTCGAG 1 cut(s) 692
PagI TCATGA 3 cut(s) 78, 760, 1395
PciI ACATGT 2 cut(s) 83, 1299
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 2 cut(s) 68, 1068
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 6 cut(s) 132, 549, 562, 897, 1119, 1168
PinAI ACCGGT 1 cut(s) 983
PkrI GCNGC 5 cut(s) 97, 283, 628, 796, 961
PleI GAGTC 2 cut(s) 68, 931
PpsI GAGTC 2 cut(s) 68, 931
Ppu21I YACGTR 1 cut(s) 740
PscI ACATGT 2 cut(s) 83, 1299
PsiI TTATAA 1 cut(s) 980
PspN4I GGNNCC 5 cut(s) 492, 1126, 1135, 1218, 1236
PspPI GGNCC 1 cut(s) 1217
PsuI RGATCY 1 cut(s) 772
PvuII CAGCTG 2 cut(s) 629, 638
RsaI GTAC 3 cut(s) 476, 1190, 1236
RsaNI GTAC 3 cut(s) 475, 1189, 1235
RseI CAYNNNNRTG 4 cut(s) 1073, 1184, 1210, 1225
SaqAI TTAA 6 cut(s) 384, 399, 515, 570, 854, 1543
SatI GCNGC 5 cut(s) 96, 282, 627, 795, 960
Sau3AI GATC 5 cut(s) 656, 757, 772, 888, 1392
Sau96I GGNCC 1 cut(s) 1217
SchI GAGTC 2 cut(s) 69, 931
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 4 cut(s) 678, 772, 946, 1495
Sfr274I CTCGAG 1 cut(s) 692
SinI GGWCC 1 cut(s) 1217
SlaI CTCGAG 1 cut(s) 692
SmiMI CAYNNNNRTG 4 cut(s) 1073, 1184, 1210, 1225
SmlI CTYRAG 2 cut(s) 183, 692
SmoI CTYRAG 2 cut(s) 183, 692
Sse9I AATT 6 cut(s) 233, 254, 1017, 1260, 1325, 1540
SsiI CCGC 4 cut(s) 66, 96, 1025, 1271
SspMI CTAG 2 cut(s) 318, 554
StyI CCWWGG 3 cut(s) 99, 127, 815
TaaI ACNGT 3 cut(s) 230, 429, 1402
TaiI ACGT 4 cut(s) 334, 742, 1194, 1290
TaqI TCGA 3 cut(s) 686, 693, 1059
TaqII GACCGA 1 cut(s) 1282
TasI AATT 6 cut(s) 233, 254, 1017, 1260, 1325, 1540
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 6 cut(s) 132, 549, 562, 897, 1119, 1168
Tru1I TTAA 6 cut(s) 384, 399, 515, 570, 854, 1543
Tru9I TTAA 6 cut(s) 384, 399, 515, 570, 854, 1543
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 61, 1346
TseI GCWGC 4 cut(s) 281, 626, 794, 959
Tsp45I GTSAC 2 cut(s) 61, 1346
TspDTI ATGAA 7 cut(s) 66, 215, 1069, 1096, 1168, 1367, 1396
TspRI CASTG 1 cut(s) 898
VneI GTGCAC 1 cut(s) 375
VpaK11BI GGWCC 1 cut(s) 1217
XapI RAATTY 1 cut(s) 233
XceI RCATGY 3 cut(s) 87, 1000, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XhoI CTCGAG 1 cut(s) 692
XmiI GTMKAC 2 cut(s) 424, 464
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 2 cut(s) 318, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.