Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015079

Physical Location & Seq

Genomic Coordinates Forward (+)

53344266 .. 53351320

Gene Structure 7055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1433100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAGCCAACGTCGTCTCCAAGCTCGTACTTCCTCCGGTCCGTACAGCTACTTCAAGCTCTTACTCTTCGCCCACCGCTCCAAAGCTCTTCTCCTCATTCTCCTGCGGTTCTAGAAGCCAAATAAGACAAGCGGGCCTTGGCAATTCTTCTTCTTCTTCTTCTTCTTCTCGTACGGTTCCCAAGTTTTCAATTGCTTCGAGTGCTGGTATTCAGGAAATTAATGAGACCCAGTTCCGGGATTCGGTTCTTAACTCGGACCGTCCGGTTCTTGTCGAGTTCGTTGCCAGTTGGTGCGGCCCTTGCCGCTTAATCTCGCCTGCTATGGAATGGCTCGCTCAGGTTCCTCTCTCTCCCCTGGGAGCCTTTCGATTTCCCATTAGTTTTTTAGGATTTAGACTTGAACTTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

139

Amino Acids

14.83

Weight (kDa)

9.05

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	72 - 114	2.6e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50320
fragaria_vesca	FvH4_4g06760
malus_domestica	MD15G1433100.v1.1
prunus_persica	Prupe.1G070700_v2.0.a1
pyrus_communis	pycom13g21100 pycom16g20440
rosa_chinensis	RchiOBHm_Chr4g0398691
rosa_laevigata	RLG00000009331
rosa_multiflora	Rmu_sc0008600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343650
rosa_rugosa	Rorug04G0010900
rosa_samantha	Rh4AG088600 Rh4BG085600 Rh4CG096700 Rh4DG080200
rosa_wichuraiana	Rw4G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	5 cut(s)	78, 108, 134, 297, 307
AfaI	GTAC	3 cut(s)	30, 46, 175
AfiI	CCNNNNNNNGG	3 cut(s)	237, 238, 244
AgsI	TTSAA	4 cut(s)	57, 192, 404, 410
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	25, 50, 60, 88
AluI	AGCT	4 cut(s)	25, 50, 60, 88
Alw26I	GTCTC	2 cut(s)	22, 221
AoxI	GGCC	2 cut(s)	136, 298
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	4 cut(s)	40, 136, 259, 299
AsuC2I	CCSGG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	40, 259
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	22, 221
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	298, 307
BlsI	GCNGC	2 cut(s)	299, 308
Bme1390I	CCNGG	2 cut(s)	239, 359
Bme18I	GGWCC	2 cut(s)	40, 259
BmgT120I	GGNCC	4 cut(s)	40, 136, 259, 299
BmiI	GGNNCC	3 cut(s)	180, 345, 364
BmrFI	CCNGG	2 cut(s)	239, 359
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	139, 357, 358
BsaWI	WCCGGW	2 cut(s)	37, 265
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 238, 244
Bse1I	ACTGG	2 cut(s)	232, 288
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	3 cut(s)	139, 357, 358
BseLI	CCNNNNNNNGG	3 cut(s)	237, 238, 244
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	232, 288
BseRI	GAGGAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	138, 300
BsiSI	CCGG	3 cut(s)	38, 238, 266
BsiWI	CGTACG	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	237, 238, 244
BsmAI	GTCTC	2 cut(s)	22, 221
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	138, 300
Bso31I	GGTCTC	1 cut(s)	221
BspACI	CCGC	5 cut(s)	78, 108, 134, 297, 307
BspANI	GGCC	2 cut(s)	138, 300
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	180, 345, 364
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	232, 288
BssECI	CCNNGG	3 cut(s)	139, 357, 358
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	178, 263
Bst6I	CTCTTC	2 cut(s)	73, 95
BstC8I	GCNNGC	3 cut(s)	136, 321, 336
BstDEI	CTNAG	1 cut(s)	339
BstMAI	GTCTC	2 cut(s)	22, 221
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 303, 306
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	237, 357
BsuRI	GGCC	2 cut(s)	138, 300
Cac8I	GCNNGC	3 cut(s)	136, 321, 336
Cfr13I	GGNCC	4 cut(s)	40, 136, 259, 299
CpoI	CGGWCCG	2 cut(s)	40, 259
Csp6I	GTAC	3 cut(s)	29, 45, 174
CspI	CGGWCCG	2 cut(s)	40, 259
CviQI	GTAC	3 cut(s)	29, 45, 174
DdeI	CTNAG	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	73, 95
EarI	CTCTTC	2 cut(s)	73, 95
Eco130I	CCWWGG	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	40, 259
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	22
FaiI	YATR	1 cut(s)	326
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	298, 307
Fsp4HI	GCNGC	2 cut(s)	298, 307
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	298, 307
HaeIII	GGCC	2 cut(s)	138, 300
HapII	CCGG	3 cut(s)	38, 238, 266
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	3 cut(s)	38, 238, 266
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	114, 215
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	178, 263
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 303, 306
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	85, 362
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	12
MbiI	CCGCTC	1 cut(s)	80
MboII	GAAGA	9 cut(s)	60, 82, 141, 144, 147, 150, 153, 156, 159
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	3 cut(s)	145, 192, 219
MnlI	CCTC	3 cut(s)	45, 106, 357
MseI	TTAA	3 cut(s)	222, 252, 311
MspI	CCGG	3 cut(s)	38, 238, 266
MspR9I	CCNGG	2 cut(s)	239, 359
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	203, 303, 306
NciI	CCSGG	1 cut(s)	239
NlaIV	GGNNCC	3 cut(s)	180, 345, 364
PasI	CCCWGGG	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	242
Pfl23II	CGTACG	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	299, 308
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspLI	CGTACG	1 cut(s)	173
PspN4I	GGNNCC	3 cut(s)	180, 345, 364
PspPI	GGNCC	4 cut(s)	40, 136, 259, 299
RsaI	GTAC	3 cut(s)	30, 46, 175
RsaNI	GTAC	3 cut(s)	29, 45, 174
Rsr2I	CGGWCCG	2 cut(s)	40, 259
RsrII	CGGWCCG	2 cut(s)	40, 259
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	222, 252, 311
SatI	GCNGC	2 cut(s)	298, 307
Sau96I	GGNCC	4 cut(s)	40, 136, 259, 299
ScrFI	CCNGG	2 cut(s)	239, 359
SetI	ASST	6 cut(s)	15, 27, 52, 62, 90, 345
SinI	GGWCC	2 cut(s)	40, 259
Sse9I	AATT	3 cut(s)	145, 192, 219
SsiI	CCGC	5 cut(s)	78, 108, 134, 297, 307
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	237, 357
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	178, 263
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	200, 276, 370
TasI	AATT	3 cut(s)	145, 192, 219
TauI	GCSGC	2 cut(s)	300, 309
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	222, 252, 311
Tru9I	TTAA	3 cut(s)	222, 252, 311
TspGWI	ACGGA	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	40, 259
VspI	ATTAAT	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.