Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015079

Physical Location & Seq

Genomic Coordinates Forward (+)

18217084 .. 18217416

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCCAAGTGTGATACAAACACTGTTTTCCCCCTTTACTCAAAACCAGCTCCTTTCTTTCCCCTCCGCCCTCCTCCTTTCTCCTCATTTGAAGATAAAAAACATGGACGCCAACGTCGTCTCCAAGCTCGTACTTCCTCCGGTCCATACAGCTACTTCAAGCTCTTACTCTTCGCTCACCGCTCCAAAGCTCTTCTCCTCATTCTTCTGCAGTTCTGGAAGCCAAATAAGACAAGCGGGCCTTTGCAATTCTTCTTCTTCTCGTACGGTTCATACGGTTCCCAAGTTTTCAATTGCTTCGAGTGCTGGTATTCAGGAAATTAACGAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

111

Amino Acids

11.75

Weight (kDa)

9.51

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50320
fragaria_vesca	FvH4_4g06760
malus_domestica	MD15G1433100.v1.1
prunus_persica	Prupe.1G070700_v2.0.a1
pyrus_communis	pycom13g21100 pycom16g20440
rosa_chinensis	RchiOBHm_Chr4g0398691
rosa_laevigata	RLG00000009331
rosa_multiflora	Rmu_sc0008600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343650
rosa_rugosa	Rorug04G0010900
rosa_samantha	Rh4AG088600 Rh4BG085600 Rh4CG096700 Rh4DG080200
rosa_wichuraiana	Rw4G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	3 cut(s)	66, 180, 236
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	2 cut(s)	132, 265
AgsI	TTSAA	3 cut(s)	91, 159, 291
AluBI	AGCT	5 cut(s)	49, 127, 152, 162, 190
AluI	AGCT	5 cut(s)	49, 127, 152, 162, 190
Alw26I	GTCTC	2 cut(s)	124, 320
AoxI	GGCC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	142, 238
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	124, 320
BfaI	CTAG	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 238
BmiI	GGNNCC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
BseRI	GAGGAG	3 cut(s)	62, 72, 187
BshFI	GGCC	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	140
BsiWI	CGTACG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	124, 320
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	320
BspACI	CCGC	3 cut(s)	66, 180, 236
BspANI	GGCC	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	182
BssNI	GRCGYC	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	24, 268, 277
Bst6I	CTCTTC	2 cut(s)	175, 197
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	238
BstMAI	GTCTC	2 cut(s)	124, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	142, 238
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	131, 264
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	49, 127, 152, 162, 190, 222, 240
CviKI_1	RGCY	7 cut(s)	49, 127, 152, 162, 190, 222, 240
CviQI	GTAC	2 cut(s)	131, 264
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	175, 197
EarI	CTCTTC	2 cut(s)	175, 197
EciI	GGCGGA	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	104, 147, 273
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	106
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	216, 314
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	24, 268, 277
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	210, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	54, 187
LpnPI	CCDG	5 cut(s)	59, 153, 201, 291, 299
MaeI	CTAG	1 cut(s)	331
MaeII	ACGT	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	182
MboII	GAAGA	7 cut(s)	103, 162, 184, 196, 243, 246, 249
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	3 cut(s)	247, 291, 318
MnlI	CCTC	6 cut(s)	73, 80, 83, 93, 147, 208
MseI	TTAA	1 cut(s)	321
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
Pfl23II	CGTACG	1 cut(s)	263
PspLI	CGTACG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	142, 238
PstI	CTGCAG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	132, 265
RsaNI	GTAC	2 cut(s)	131, 264
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	142, 238
SetI	ASST	7 cut(s)	51, 117, 129, 154, 164, 192, 332
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	247, 291, 318
SsiI	CCGC	3 cut(s)	66, 180, 236
SspMI	CTAG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	24, 268, 277
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	247, 291, 318
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.