AT1G50700

calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18781764 .. 18784582
2819 bp
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UTR
Exon/CDS
Intron
AT1G50700.2

Sequence Viewer

Length: 1566 bp
ATGGGGAATTGCTTAGCCAAGAAATACGGATTGGTGATGAAACCACAACAAAATGGTGAAAGATCAGTTGAGATCGAGAACAGAAGAAGGAGCACCCACCAAGATCCGTCTAAAATATCCACCGGAACGAATCAACCACCACCTTGGCGGAATCCAGCGAAACACAGTGGTGCTGCAGCTATACTCGAGAAGCCGTACGAAGACGTGAAACTGTTCTACACTTTGAGCAAAGAATTGGGTCGAGGCCAGTTTGGAGTAACGTATCTGTGCACAGAGAAGTCGACGGGGAAGAGATTCGCTTGCAAGTCGATTTCCAAGAAGAAACTTGTGACGAAAGGTGATAAAGAAGATATGAGGAGAGAGATTCAGATTATGCAGCATTTGAGTGGACAACCTAACATTGTTGAGTTTAAAGGAGCTTATGAAGATGAGAAAGCTGTGAATTTGGTTATGGAGCTTTGTGCTGGTGGTGAATTGTTCGATAGGATTTTAGCAAAGGGACATTACAGTGAGAGAGCAGCTGCTTCTGTTTGTAGACAGATTGTTAATGTTGTCAATATTTGTCATTTCATGGGTGTGATGCATAGAGACTTAAAGCCTGAGAATTTCTTGTTATCTAGCAAAGATGAGAAGGCTCTTATCAAAGCCACTGATTTCGGATTATCAGTCTTTATCGAAGAAGGGAGAGTGTATAAAGATATAGTTGGGAGTGCATATTATGTTGCTCCTGAAGTTTTGAAGCGGAGATATGGTAAAGAAATCGATATATGGAGTGCTGGAATTATACTATACATTCTACTTAGTGGTGTGCCTCCGTTTTGGGCTGAAACGGAGAAAGGGATATTTGATGCTATATTGGAAGGTGAAATCGACTTTGAATCCCAACCTTGGCCCTCAATTTCCAATAGTGCTAAAGATTTGGTACGTAGAATGTTGACACAAGATCCGAAAAGACGGATTTCTGCTGCTGAAGTTCTTAAGCATCCATGGCTAAGAGAAGGTGGAGAAGCATCGGATAAGCCTATTGATAGTGCTGTTCTCTCAAGGATGAAGCAATTTAGAGCGATGAATAAACTAAAGAAACTTGCTTTAAAGGTCATTGCGGAGAACATTGACACGGAAGAAATACAAGGCTTAAAGGCGATGTTTGCTAATATAGATACAGACAATAGTGGTACTATCACATACGAAGAATTGAAAGAAGGATTAGCCAAACTGGGATCAAGACTCACTGAAGCTGAAGTGAAACAGCTCATGGATGCTGCTGACGTTGATGGAAATGGGTCAATAGATTACATTGAGTTTATTACTGCAACAATGCATAGACATAGGCTTGAAAGTAATGAGAACGTTTACAAAGCCTTCCAACATTTTGACAAAGATGGGAGTGGATACATTACGACAGACGAGCTAGAGGCTGCTTTGAAGGAATATGGAATGGGAGATGATGCTACTATCAAAGAGATTTTGTCTGATGTCGACGCTGATAATGACGGTAGAATCAACTATGACGAGTTTTGTGCTATGATGAGAAGTGGGAATCCACAACAACCAAGATTGTTCTAA

Protein Analysis

521

Amino Acids

58.61

Weight (kDa)

6.04

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 331 1.2e-78 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 74 - 326 3.6e-30 Protein tyrosine and serine/threonine kinase
EF-hand_7 PF13499 378 - 465 9.4e-09 EF-hand domain pair
EF-hand_1 PF00036 379 - 406 4.4e-07 EF hand domain
EF-hand_7 PF13499 476 - 537 7.4e-17 EF-hand domain pair
EF-hand_1 PF00036 478 - 503 3.1e-07 EF hand domain
EF-hand_6 PF13405 478 - 505 6.1e-08 EF-hand domain
EF-hand_1 PF00036 512 - 538 9.6e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 281, 535, 1479
AciI CCGC 3 cut(s) 148, 742, 1103
AclI AACGTT 1 cut(s) 1350
AclWI GGATC 3 cut(s) 98, 938, 1228
AcsI RAATTY 2 cut(s) 442, 604
AcuI CTGAAG 4 cut(s) 750, 990, 1254, 1260
AfaI GTAC 3 cut(s) 197, 924, 1177
AfiI CCNNNNNNNGG 1 cut(s) 888
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 5 cut(s) 739, 878, 1198, 1337, 1426
AjiI CACGTC 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 8 cut(s) 179, 419, 437, 457, 521, 1238, 1252, 1411
AluI AGCT 8 cut(s) 179, 419, 437, 457, 521, 1238, 1252, 1411
Alw21I GWGCWC 2 cut(s) 95, 272
Alw26I GTCTC 1 cut(s) 582
Alw44I GTGCAC 1 cut(s) 268
AlwI GGATC 3 cut(s) 98, 938, 1228
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 244, 890
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 8 cut(s) 173, 176, 376, 518, 521, 965, 1262, 1418
ApoI RAATTY 2 cut(s) 442, 604
Asp700I GAANNNNTTC 2 cut(s) 212, 293
AspS9I GGNCC 1 cut(s) 891
AsuHPI GGTGA 5 cut(s) 46, 68, 350, 482, 875
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 95, 272
BbvI GCAGC 8 cut(s) 160, 188, 388, 508, 530, 952, 1249, 1405
BccI CCATC 2 cut(s) 1268, 1376
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 1502, 1536
BciVI GTATCC 1 cut(s) 1385
BcoDI GTCTC 1 cut(s) 582
BfaI CTAG 2 cut(s) 618, 1412
BfmI CTRYAG 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 977
BfuI GTATCC 1 cut(s) 1385
BisI GCNGC 8 cut(s) 174, 177, 377, 519, 522, 966, 1263, 1419
BlpI GCTNAGC 1 cut(s) 13
BlsI GCNGC 8 cut(s) 175, 178, 378, 520, 523, 967, 1264, 1420
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 1226
BmsI GCATC 6 cut(s) 570, 838, 991, 1019, 1249, 1438
BmuI ACTGGG 1 cut(s) 1226
BpiI GAAGAC 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 1027
Bsa29I ATCGAT 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 926
BsaJI CCNNGG 3 cut(s) 143, 887, 986
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 1 cut(s) 888
Bse1I ACTGG 2 cut(s) 247, 1221
Bse3DI GCAATG 1 cut(s) 1098
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 3 cut(s) 143, 887, 986
BseGI GGATG 3 cut(s) 982, 1053, 1264
BseLI CCNNNNNNNGG 1 cut(s) 888
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 247, 1221
BseRI GAGGAG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 8 cut(s) 160, 188, 388, 508, 530, 952, 1249, 1405
BshFI GGCC 2 cut(s) 246, 892
BshVI ATCGAT 1 cut(s) 762
BsiHKAI GWGCWC 2 cut(s) 95, 272
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 123
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 888
BsmAI GTCTC 1 cut(s) 582
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 2 cut(s) 246, 892
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 95, 272
Bsp143I GATC 5 cut(s) 62, 72, 103, 943, 1220
Bsp1720I GCTNAGC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 986
BspACI CCGC 3 cut(s) 148, 742, 1103
BspANI GGCC 2 cut(s) 246, 892
BspCNI CTCAG 1 cut(s) 592
BspDI ATCGAT 1 cut(s) 762
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 3 cut(s) 98, 938, 1228
BspTI CTTAAG 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 1098
BsrI ACTGG 2 cut(s) 247, 1221
BssECI CCNNGG 3 cut(s) 143, 887, 986
BssMI GATC 5 cut(s) 62, 72, 103, 943, 1220
BssT1I CCWWGG 3 cut(s) 143, 887, 986
Bst4CI ACNGT 4 cut(s) 167, 213, 509, 1496
Bst6I CTCTTC 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 977
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 13, 600, 800, 992
BstDSI CCRYGG 1 cut(s) 986
BstF5I GGATG 3 cut(s) 982, 1053, 1264
BstKTI GATC 5 cut(s) 65, 75, 106, 946, 1223
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 5 cut(s) 62, 72, 103, 943, 1220
BstMWI GCNNNNNNNGC 2 cut(s) 988, 1148
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 272
BstSNI TACGTA 1 cut(s) 926
BstV1I GCAGC 8 cut(s) 160, 188, 388, 508, 530, 952, 1249, 1405
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 103, 943
BstXI CCANNNNNNTGG 1 cut(s) 144
BstYI RGATCY 2 cut(s) 103, 943
Bsu15I ATCGAT 1 cut(s) 762
BsuI GTATCC 1 cut(s) 1385
BsuRI GGCC 2 cut(s) 246, 892
BsuTUI ATCGAT 1 cut(s) 762
BtgI CCRYGG 1 cut(s) 986
BtgZI GCGATG 2 cut(s) 1079, 1157
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 3 cut(s) 982, 1053, 1264
BtsIMutI CAGTG 4 cut(s) 172, 514, 648, 1230
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 891
ClaI ATCGAT 1 cut(s) 762
CseI GACGC 1 cut(s) 1490
Csp6I GTAC 3 cut(s) 196, 923, 1176
CviAII CATG 3 cut(s) 571, 987, 1255
CviQI GTAC 3 cut(s) 196, 923, 1176
DdeI CTNAG 4 cut(s) 13, 600, 800, 992
DpnI GATC 5 cut(s) 64, 74, 105, 945, 1222
DpnII GATC 5 cut(s) 62, 72, 103, 943, 1220
DraI TTTAAA 2 cut(s) 412, 1092
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 163
Eco105I TACGTA 1 cut(s) 926
Eco130I CCWWGG 3 cut(s) 143, 887, 986
Eco57I CTGAAG 4 cut(s) 750, 990, 1254, 1260
Eco88I CYCGRG 1 cut(s) 185
EcoT14I CCWWGG 3 cut(s) 143, 887, 986
EcoT22I ATGCAT 2 cut(s) 585, 1323
ErhI CCWWGG 3 cut(s) 143, 887, 986
FaeI CATG 3 cut(s) 574, 990, 1258
FaqI GGGAC 1 cut(s) 513
FatI CATG 3 cut(s) 570, 986, 1254
FblI GTMKAC 3 cut(s) 281, 535, 1479
Fnu4HI GCNGC 8 cut(s) 174, 177, 377, 519, 522, 966, 1263, 1419
FokI GGATG 3 cut(s) 969, 1060, 1271
Fsp4HI GCNGC 8 cut(s) 174, 177, 377, 519, 522, 966, 1263, 1419
FspBI CTAG 2 cut(s) 618, 1412
GluI GCNGC 8 cut(s) 174, 177, 377, 519, 522, 966, 1263, 1419
HaeIII GGCC 2 cut(s) 246, 892
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 1490
Hin1II CATG 3 cut(s) 574, 990, 1258
HincII GTYRAC 3 cut(s) 282, 936, 1480
HindII GTYRAC 3 cut(s) 282, 936, 1480
HinfI GANTC 8 cut(s) 130, 151, 294, 364, 878, 1227, 1500, 1540
HpaII CCGG 1 cut(s) 123
HphI GGTGA 5 cut(s) 46, 68, 350, 482, 875
Hpy166II GTNNAC 7 cut(s) 270, 282, 389, 536, 936, 1354, 1480
Hpy188I TCNGA 5 cut(s) 369, 659, 948, 1015, 1474
Hpy188III TCNNGA 4 cut(s) 76, 187, 728, 1224
Hpy8I GTNNAC 7 cut(s) 270, 282, 389, 536, 936, 1354, 1480
Hpy99I CGWCG 2 cut(s) 286, 1484
HpyAV CCTTC 8 cut(s) 81, 625, 674, 854, 992, 1196, 1372, 1420
HpyCH4III ACNGT 4 cut(s) 167, 213, 509, 1496
HpyCH4IV ACGT 5 cut(s) 204, 260, 925, 1269, 1350
HpyCH4V TGCA 8 cut(s) 176, 270, 303, 376, 583, 713, 1313, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 988, 1148
HpyF3I CTNAG 4 cut(s) 13, 600, 800, 992
HpySE526I ACGT 5 cut(s) 204, 260, 925, 1269, 1350
Hsp92II CATG 3 cut(s) 574, 990, 1258
Kzo9I GATC 5 cut(s) 62, 72, 103, 943, 1220
LmnI GCTCC 4 cut(s) 90, 416, 454, 730
LpnPI CCDG 8 cut(s) 136, 168, 260, 450, 612, 741, 762, 1202
Lsp1109I GCAGC 8 cut(s) 160, 188, 388, 508, 530, 952, 1249, 1405
LweI GCATC 6 cut(s) 570, 838, 991, 1019, 1249, 1438
MaeI CTAG 2 cut(s) 618, 1412
MaeII ACGT 5 cut(s) 204, 260, 925, 1269, 1350
MaeIII GTNAC 2 cut(s) 256, 328
MalI GATC 5 cut(s) 64, 74, 105, 945, 1222
MboI GATC 5 cut(s) 62, 72, 103, 943, 1220
MboII GAAGA 9 cut(s) 96, 212, 301, 331, 359, 437, 689, 1133, 1202
MflI RGATCY 2 cut(s) 103, 943
MhlI GDGCHC 2 cut(s) 95, 272
MluCI AATT 9 cut(s) 7, 233, 442, 473, 604, 780, 897, 1055, 1193
MlyI GAGTC 1 cut(s) 1221
MmeI TCCRAC 1 cut(s) 1390
MnlI CCTC 5 cut(s) 236, 348, 822, 904, 1408
Mph1103I ATGCAT 2 cut(s) 585, 1323
MroXI GAANNNNTTC 2 cut(s) 212, 293
MseI TTAA 6 cut(s) 411, 546, 593, 978, 1091, 1136
MslI CAYNNNNRTG 4 cut(s) 168, 384, 507, 575
MspA1I CMGCKG 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 988, 1148
NcoI CCATGG 1 cut(s) 986
NdeII GATC 5 cut(s) 62, 72, 103, 943, 1220
NlaIII CATG 3 cut(s) 574, 990, 1258
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 2 cut(s) 585, 1323
OliI CACNNNNGTG 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 185
PdmI GAANNNNTTC 2 cut(s) 212, 293
PfeI GAWTC 7 cut(s) 130, 151, 294, 364, 878, 1500, 1540
Pfl23II CGTACG 1 cut(s) 195
PkrI GCNGC 8 cut(s) 175, 178, 378, 520, 523, 967, 1264, 1420
PleI GAGTC 1 cut(s) 1221
PpsI GAGTC 1 cut(s) 1221
Ppu21I YACGTR 1 cut(s) 926
Psp1406I AACGTT 1 cut(s) 1350
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 891
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 103, 943
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 3 cut(s) 197, 924, 1177
RsaNI GTAC 3 cut(s) 196, 923, 1176
RseI CAYNNNNRTG 4 cut(s) 168, 384, 507, 575
SalI GTCGAC 2 cut(s) 280, 1478
SaqAI TTAA 6 cut(s) 411, 546, 593, 978, 1091, 1136
SatI GCNGC 8 cut(s) 174, 177, 377, 519, 522, 966, 1263, 1419
Sau3AI GATC 5 cut(s) 62, 72, 103, 943, 1220
Sau96I GGNCC 1 cut(s) 891
SchI GAGTC 1 cut(s) 1221
SduI GDGCHC 2 cut(s) 95, 272
SfaNI GCATC 6 cut(s) 570, 838, 991, 1019, 1249, 1438
SfcI CTRYAG 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 4 cut(s) 168, 384, 507, 575
SmlI CTYRAG 3 cut(s) 185, 977, 1042
SmoI CTYRAG 3 cut(s) 185, 977, 1042
SnaBI TACGTA 1 cut(s) 926
Sse9I AATT 9 cut(s) 7, 233, 442, 473, 604, 780, 897, 1055, 1193
SsiI CCGC 3 cut(s) 148, 742, 1103
SspI AATATT 1 cut(s) 559
SspMI CTAG 2 cut(s) 618, 1412
StyI CCWWGG 3 cut(s) 143, 887, 986
TaaI ACNGT 4 cut(s) 167, 213, 509, 1496
TaiI ACGT 5 cut(s) 207, 263, 928, 1272, 1353
TasI AATT 9 cut(s) 7, 233, 442, 473, 604, 780, 897, 1055, 1193
TfiI GAWTC 7 cut(s) 130, 151, 294, 364, 878, 1500, 1540
Tru1I TTAA 6 cut(s) 411, 546, 593, 978, 1091, 1136
Tru9I TTAA 6 cut(s) 411, 546, 593, 978, 1091, 1136
TscAI CASTG 4 cut(s) 172, 514, 655, 1237
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 8 cut(s) 173, 176, 376, 518, 521, 965, 1262, 1418
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 53, 438, 559, 1064, 1082
TspGWI ACGGA 6 cut(s) 42, 96, 804, 845, 970, 1133
TspRI CASTG 4 cut(s) 172, 514, 655, 1237
Vha464I CTTAAG 1 cut(s) 977
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 2 cut(s) 442, 604
XhoI CTCGAG 1 cut(s) 185
XmiI GTMKAC 3 cut(s) 281, 535, 1479
XmnI GAANNNNTTC 2 cut(s) 212, 293
XspI CTAG 2 cut(s) 618, 1412
Zsp2I ATGCAT 2 cut(s) 585, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.