Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008918

Physical Location & Seq

Genomic Coordinates Reverse (-)

31726393 .. 31730066

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1217500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGGGTGATGCATCGGGACCTGAAGCCGGAGAATTTCTTGCTGTCTAGCAAGGATGAGAATGCCCTTCTCAAGCCTACAGATTTCGGGTTGTCGGTCTTCATTGAAGAAGGAAAGGTGTATCGTGATATAGTTGGGAGTGCTTACTATGTTGCTCCTGAAGTAATGCGATGCAGATATGGGAAGGAAATAGACATATGGAGTACAGGAGTTATATTGTATATTTTACTAAGTGGAGTGCCTCCATTTTGGGCAGAAATGGAGAAGGGGATGTTTGATGCCATATTGGAGGGAGAGATTGACTTTTCAAGTGCACCATGGTCATCTATATCAACCAGTGCCAAGGACCTAGTCCGGAGGATGCTAACACAGGACCCTAAAAAACGTATCACTTCGACTCAGGTTCTAGAGCATCCATGGATCAGAGACGGTGGAGAAGCTTCAGACAAACCCATAGACAGTGCAGTGCTTTCTAGGATGAAGCAGTTCAGAGAAATGAACAAACTTAAAAAACTTGCATTGAAGGTTATTGCAGAAAATCTTTCTGAAGAAGAAATCCATGGGCTGAAGGCAACGTTTACAAACATGGACACCGACAACAGTGGAACCATCACTTATGATGAACTCAAGTCAGGATTGGCTCGACTTGGCTCTAAGCTCACAGAGGCTGAAGTCAAGCAGCTAATGGAAGCTGTAAGTTATTATCAAATTTTCGATTACCTTTTCCGCATACCTTTTTGCATCCCGCCCAACTCATATTCTGCATTTGCATTTCAGGCTGATGTGGATGGGAGTGGATCGATTGACTACATTGAATTCATCACTGCTACAATGCATAGACACAGGCTAGAGAGGGACGAACATCTTTACAAAGCCTTTCAATATTTTGACAAAGATAATATAGCTGGTAAGCTTTTCTTCCAATCTCTAAGAAATGCTTTTATCACAAGAGATGAGCTAGAATCAGCAATGAAAGAGTATGGGATGGGCGACGAAGCTACAATTAGGGAAATAATATCCGACGTTGATACAGATATTAGAAGATGCGACTATGGGACAGAGGTTCAGGGCCGAAGGGGTAGAGGAAGACCTAGGAAAACTTTGGAAGAGACTCTAAGAAAAGACTTAGAGTACTTGGATCTAACGAAGGACATGACACAGGATCGAGCACAATGGCGTTCTAAGATTCATATAGCCGATCCCACTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

404

Amino Acids

46.27

Weight (kDa)

5.34

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 141	1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 137	1.1e-09	Protein tyrosine and serine/threonine kinase
EF-hand_7	PF13499	189 - 231	8.4e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50700 AT1G50700 AT1G50700 AT3G20410 AT3G20410
fragaria_vesca	FvH4_3g22730 FvH4_3g22730
malus_domestica	MD03G1200500.v1.1 MD11G1217500.v1.1
prunus_persica	Prupe.4G213800_v2.0.a1 Prupe.4G213800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039651
rosa_laevigata	RLG00000033934
rosa_multiflora	Rmu_ssc0000400.1_g000007 Rmu_ssc0000400.1_g000008
rosa_roxburghii	Rroxscaffold_1G00041560
rosa_rugosa	Rorug05G0180900
rosa_samantha	Rh5AG267700 Rh5BG272000 Rh5CG304600 Rh5DG279700
rosa_wichuraiana	Rw5G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	354
AciI	CCGC	2 cut(s)	727, 746
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	5 cut(s)	428, 805, 1146, 1170, 1193
AcsI	RAATTY	3 cut(s)	34, 708, 815
AcuI	CTGAAG	6 cut(s)	44, 180, 426, 567, 587, 690
AdeI	CACNNNGTG	1 cut(s)	1209
AfaI	GTAC	2 cut(s)	205, 1133
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	107, 309, 523, 815, 881
AluBI	AGCT	8 cut(s)	440, 658, 682, 692, 905, 913, 958, 998
AluI	AGCT	8 cut(s)	440, 658, 682, 692, 905, 913, 958, 998
Alw21I	GWGCWC	2 cut(s)	316, 1171
Alw26I	GTCTC	2 cut(s)	420, 1103
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	5 cut(s)	428, 805, 1146, 1170, 1193
AlwNI	CAGNNNCTG	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	354
AoxI	GGCC	1 cut(s)	1069
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	3 cut(s)	34, 708, 815
Asp700I	GAANNNNTTC	1 cut(s)	485
AspA2I	CCTAGG	1 cut(s)	1091
AspS9I	GGNCC	4 cut(s)	19, 346, 373, 1069
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	3 cut(s)	19, 346, 373
AvrII	CCTAGG	1 cut(s)	1091
BaeGI	GKGCMC	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	91, 1093
Bbv12I	GWGCWC	2 cut(s)	316, 1171
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	3 cut(s)	617, 782, 979
BcoDI	GTCTC	2 cut(s)	420, 1103
BfaI	CTAG	7 cut(s)	48, 350, 407, 474, 848, 959, 1092
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	680
BlnI	CCTAGG	1 cut(s)	1091
BlsI	GCNGC	1 cut(s)	681
BmcAI	AGTACT	1 cut(s)	1133
Bme18I	GGWCC	3 cut(s)	19, 346, 373
BmgT120I	GGNCC	4 cut(s)	19, 346, 373, 1069
BmiI	GGNNCC	3 cut(s)	20, 375, 607
BmsI	GCATC	7 cut(s)	22, 161, 268, 351, 421, 750, 1034
BpiI	GAAGAC	2 cut(s)	91, 1093
BpuEI	CTTGAG	2 cut(s)	56, 611
Bsa29I	ATCGAT	1 cut(s)	800
BsaJI	CCNNGG	5 cut(s)	317, 342, 416, 559, 1091
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	975
BseAI	TCCGGA	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	800
BseDI	CCNNGG	5 cut(s)	317, 342, 416, 559, 1091
BseGI	GGATG	8 cut(s)	61, 276, 366, 412, 483, 741, 793, 990
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	691
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	1071
BshVI	ATCGAT	1 cut(s)	800
BsiHKAI	GWGCWC	2 cut(s)	316, 1171
BsiSI	CCGG	2 cut(s)	29, 355
BslFI	GGGAC	3 cut(s)	32, 869, 1069
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	420, 1103
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	3 cut(s)	32, 869, 1069
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	1071
Bsp1286I	GDGCHC	2 cut(s)	316, 1171
Bsp13I	TCCGGA	1 cut(s)	354
Bsp143I	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
Bsp19I	CCATGG	3 cut(s)	317, 416, 559
BspACI	CCGC	2 cut(s)	727, 746
BspANI	GGCC	1 cut(s)	1071
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	800
BspEI	TCCGGA	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	20, 375, 607
BspPI	GGATC	5 cut(s)	428, 805, 1146, 1170, 1193
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	5 cut(s)	317, 342, 416, 559, 1091
BssMI	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
BssT1I	CCWWGG	5 cut(s)	317, 342, 416, 559, 1091
Bst4CI	ACNGT	3 cut(s)	431, 461, 602
Bst6I	CTCTTC	1 cut(s)	1101
BstDEI	CTNAG	8 cut(s)	230, 399, 654, 929, 1115, 1126, 1182, 1206
BstDSI	CCRYGG	3 cut(s)	317, 416, 559
BstF5I	GGATG	8 cut(s)	61, 276, 366, 412, 483, 741, 793, 990
BstKTI	GATC	5 cut(s)	423, 800, 1141, 1165, 1201
BstMAI	GTCTC	2 cut(s)	420, 1103
BstMBI	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	691
BstV2I	GAAGAC	2 cut(s)	91, 1093
BstX2I	RGATCY	1 cut(s)	1138
BstYI	RGATCY	1 cut(s)	1138
Bsu15I	ATCGAT	1 cut(s)	800
BsuRI	GGCC	1 cut(s)	1071
BsuTUI	ATCGAT	1 cut(s)	800
BtgI	CCRYGG	3 cut(s)	317, 416, 559
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	8 cut(s)	61, 276, 366, 412, 483, 741, 793, 990
BtsI	GCAGTG	2 cut(s)	471, 822
BtsIMutI	CAGTG	5 cut(s)	343, 466, 471, 607, 822
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr13I	GGNCC	4 cut(s)	19, 346, 373, 1069
ClaI	ATCGAT	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	204, 1132
CviAII	CATG	5 cut(s)	318, 417, 560, 586, 1153
CviQI	GTAC	2 cut(s)	204, 1132
DdeI	CTNAG	8 cut(s)	230, 399, 654, 929, 1115, 1126, 1182, 1206
DpnI	GATC	5 cut(s)	422, 799, 1140, 1164, 1200
DpnII	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
DraIII	CACNNNGTG	1 cut(s)	1209
Eam1104I	CTCTTC	1 cut(s)	1101
EarI	CTCTTC	1 cut(s)	1101
Eco130I	CCWWGG	5 cut(s)	317, 342, 416, 559, 1091
Eco47I	GGWCC	3 cut(s)	19, 346, 373
Eco57I	CTGAAG	6 cut(s)	44, 180, 426, 567, 587, 690
EcoO109I	RGGNCCY	3 cut(s)	19, 346, 373
EcoRI	GAATTC	1 cut(s)	815
EcoT14I	CCWWGG	5 cut(s)	317, 342, 416, 559, 1091
EcoT22I	ATGCAT	2 cut(s)	15, 837
ErhI	CCWWGG	5 cut(s)	317, 342, 416, 559, 1091
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	5 cut(s)	321, 420, 563, 589, 1156
FalI	AAGNNNNNCTT	4 cut(s)	902, 934, 922, 954
FaqI	GGGAC	3 cut(s)	32, 869, 1069
FatI	CATG	5 cut(s)	317, 416, 559, 585, 1152
FauI	CCCGC	1 cut(s)	753
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	680
FokI	GGATG	8 cut(s)	68, 283, 373, 399, 490, 728, 800, 997
Fsp4HI	GCNGC	1 cut(s)	680
FspBI	CTAG	7 cut(s)	48, 350, 407, 474, 848, 959, 1092
GluI	GCNGC	1 cut(s)	680
HaeIII	GGCC	1 cut(s)	1071
HapII	CCGG	2 cut(s)	29, 355
Hin1II	CATG	5 cut(s)	321, 420, 563, 589, 1156
HindIII	AAGCTT	2 cut(s)	438, 911
HinfI	GANTC	4 cut(s)	397, 962, 1111, 1186
HpaII	CCGG	2 cut(s)	29, 355
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	314, 579
Hpy188I	TCNGA	5 cut(s)	425, 445, 491, 547, 1021
Hpy188III	TCNNGA	6 cut(s)	17, 125, 158, 355, 407, 633
Hpy8I	GTNNAC	2 cut(s)	314, 579
Hpy99I	CGWCG	2 cut(s)	995, 1025
HpyAV	CCTTC	8 cut(s)	77, 104, 178, 259, 517, 562, 1068, 1141
HpyCH4III	ACNGT	3 cut(s)	431, 461, 602
HpyCH4IV	ACGT	3 cut(s)	385, 575, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	8 cut(s)	230, 399, 654, 929, 1115, 1126, 1182, 1206
HpySE526I	ACGT	3 cut(s)	385, 575, 1023
Hsp92II	CATG	5 cut(s)	321, 420, 563, 589, 1156
Kpn2I	TCCGGA	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	7 cut(s)	22, 161, 268, 351, 421, 750, 1034
MaeI	CTAG	7 cut(s)	48, 350, 407, 474, 848, 959, 1092
MaeII	ACGT	3 cut(s)	385, 575, 1023
MalI	GATC	5 cut(s)	422, 799, 1140, 1164, 1200
MboI	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
MboII	GAAGA	8 cut(s)	91, 119, 560, 563, 910, 1053, 1098, 1118
MflI	RGATCY	1 cut(s)	1138
MhlI	GDGCHC	2 cut(s)	316, 1171
MluCI	AATT	4 cut(s)	34, 708, 815, 1002
MlyI	GAGTC	2 cut(s)	391, 1105
MmeI	TCCRAC	1 cut(s)	1044
MnlI	CCTC	7 cut(s)	252, 283, 351, 658, 846, 1054, 1076
Mph1103I	ATGCAT	2 cut(s)	15, 837
MroI	TCCGGA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	1 cut(s)	507
MspI	CCGG	2 cut(s)	29, 355
Mva1269I	GAATGC	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	776
NcoI	CCATGG	3 cut(s)	317, 416, 559
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
NlaIII	CATG	5 cut(s)	321, 420, 563, 589, 1156
NlaIV	GGNNCC	3 cut(s)	20, 375, 607
NsiI	ATGCAT	2 cut(s)	15, 837
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	962, 1186
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	681
PleI	GAGTC	2 cut(s)	391, 1105
PpsI	GAGTC	2 cut(s)	391, 1105
PpuMI	RGGWCCY	3 cut(s)	19, 346, 373
Psp1406I	AACGTT	1 cut(s)	575
Psp5II	RGGWCCY	3 cut(s)	19, 346, 373
PspN4I	GGNNCC	3 cut(s)	20, 375, 607
PspPI	GGNCC	4 cut(s)	19, 346, 373, 1069
PspPPI	RGGWCCY	3 cut(s)	19, 346, 373
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	1138
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	205, 1133
RsaNI	GTAC	2 cut(s)	204, 1132
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	680
Sau3AI	GATC	5 cut(s)	420, 797, 1138, 1162, 1198
Sau96I	GGNCC	4 cut(s)	19, 346, 373, 1069
ScaI	AGTACT	1 cut(s)	1133
SchI	GAGTC	2 cut(s)	391, 1105
SduI	GDGCHC	2 cut(s)	316, 1171
SfaNI	GCATC	7 cut(s)	22, 161, 268, 351, 421, 750, 1034
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	3 cut(s)	19, 346, 373
SmlI	CTYRAG	2 cut(s)	71, 626
SmoI	CTYRAG	2 cut(s)	71, 626
Sse9I	AATT	4 cut(s)	34, 708, 815, 1002
SsiI	CCGC	2 cut(s)	727, 746
SspI	AATATT	1 cut(s)	884
SspMI	CTAG	7 cut(s)	48, 350, 407, 474, 848, 959, 1092
StyI	CCWWGG	5 cut(s)	317, 342, 416, 559, 1091
TaaI	ACNGT	3 cut(s)	431, 461, 602
TaiI	ACGT	3 cut(s)	388, 578, 1026
TaqI	TCGA	5 cut(s)	395, 643, 714, 800, 1165
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	34, 708, 815, 1002
TatI	WGTACW	2 cut(s)	203, 1131
TfiI	GAWTC	2 cut(s)	962, 1186
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	5 cut(s)	343, 466, 471, 607, 829
TseI	GCWGC	1 cut(s)	679
TspDTI	ATGAA	7 cut(s)	91, 494, 512, 636, 808, 986, 1178
TspRI	CASTG	5 cut(s)	343, 466, 471, 607, 829
Tth111I	GACNNNGTC	1 cut(s)	350
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	19, 346, 373
XapI	RAATTY	3 cut(s)	34, 708, 815
XbaI	TCTAGA	1 cut(s)	406
XmaJI	CCTAGG	1 cut(s)	1091
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	7 cut(s)	48, 350, 407, 474, 848, 959, 1092
ZrmI	AGTACT	1 cut(s)	1133
Zsp2I	ATGCAT	2 cut(s)	15, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.