Rmu_ssc0000400.1_g000007

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
Physical Location & Seq
Reverse (-)
28063 .. 32475
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000007.1.cds

Sequence Viewer

Length: 1605 bp
atgggcaagtgtctaagcaaaagcagagacccagagccacaacataatggttacagatcaggaggaggagctggacaacattaccaaaaaccccgtgagccagttgttcaccaatccaaggcctctgttcagcaacatcatcaattaccagagaagcgtggcatggcagcccatcaagaaccccaaccagcttggaagccatctgttccagccagaaaccccaaaccagttctcaggccagacacaattctggggaagccatatgaggatgtgaagttgcactacaccttgggaaaagagttgggtagagggcaatttggggtcacatatctttgtactgacatttcaaccgggaggaaatatgcttgcaagtcaatctcaaagaggaagctggtgaccaaaaatgacaaggaggatataaagagggagattcagattatgcagcatttgagtgggcagccaaacattgtggagttcaagggatcttatgaggataagcagtctgtgcatgtttgtatggagctttgtgcaggtggtgagctttttgataggattattgcaaagggtcattacagtgagagagcagcttctgcaatatgcaggtctattgtgagtgttgtgcatatctgtcatttcatgggtgtgatgcatagagacctcaagcctgagaatttcttgctgtctagcaaggatgagaatgcccttctcaaggctaccgatttcgggttgtcagtgttcattgaagaaggaaaggtgtatcgtgatatagttgggagtgcttattatgttgctcctgaagtactacggcgcagatacggcaaggaaatagatatctggagtgcaggagttatcctgtatattttactaagtggagtacctccattttgggctgaatcggagaagggaatatttgatgccattttggagggagtgatcgactttgatagtgcaccgtggccatcaatatcacacagtgctaaggacctggtccggaagatgctgacacaagaccctaaaaagcgaattacttcagctcaggtcttagaagcatcagacaaacccatagacagcgcagtgctttctagaatgaagcagtttagagcaatgaacaaactgaaaaaacttgcattgaaggttattgctgaaaatctttctgaagaagaaatccatgggcttaaggcaatgtttgcaaacatggatactgacaagagtggaaccatcacttatgatgaattgaagtcaggattggctcgacttgggtctaagctgactgaggctgaagtcaagcagctaatggaagctgctgatgtggatgggaatggagcaattgactacattgaattcattactgctacaatgcacagacacaagctagagagggatgaacatctttacaaagccttccaatactttgacacagacaacagtgggtttattactagagatgagctagaaaaagctatgaaagagtatggtatgggtgacgaagccacaattagggatataatatctgaagtagatacagataatgatggtaggatcaactatgaggagttctgcacaatgatgagaagtggaacccaacagcagggcaagctattctaa

Protein Analysis

534

Amino Acids

60.15

Weight (kDa)

7.02

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 2 cut(s) 521, 591
AccIII TCCGGA 1 cut(s) 990
AclWI GGATC 2 cut(s) 490, 1547
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 2 cut(s) 670, 1340
AcuI CTGAAG 5 cut(s) 816, 1014, 1176, 1299, 1533
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 3 cut(s) 337, 801, 876
AfiI CCNNNNNNNGG 5 cut(s) 118, 709, 723, 1497, 1588
AflII CTTAAG 1 cut(s) 1175
AgsI TTSAA 6 cut(s) 348, 478, 743, 1132, 1237, 1340
AjnI CCWGG 1 cut(s) 984
AjuI GAANNNNNNNTTGG 2 cut(s) 1229, 1261
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 2 cut(s) 21, 648
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 2 cut(s) 490, 1547
AlwNI CAGNNNCTG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 990
AoxI GGCC 3 cut(s) 120, 236, 956
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 6 cut(s) 167, 442, 457, 584, 1288, 1301
ApoI RAATTY 2 cut(s) 670, 1340
Asp700I GAANNNNTTC 1 cut(s) 1027
AspLEI GCGC 2 cut(s) 810, 1073
AspS9I GGNCC 2 cut(s) 982, 988
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 4 cut(s) 101, 406, 548, 1493
AvaII GGWCC 2 cut(s) 982, 988
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 1 cut(s) 958
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 6 cut(s) 179, 454, 469, 596, 1288, 1300
BccI CCATC 6 cut(s) 180, 208, 967, 1226, 1307, 1526
BceAI ACGGC 2 cut(s) 821, 832
BciT130I CCWGG 1 cut(s) 986
BciVI GTATCC 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 21, 648
BfaI CTAG 5 cut(s) 684, 1083, 1373, 1440, 1451
BfrI CTTAAG 1 cut(s) 1175
BfuAI ACCTGC 2 cut(s) 521, 591
BfuI GTATCC 1 cut(s) 1192
BisI GCNGC 6 cut(s) 168, 443, 458, 585, 1289, 1302
BlsI GCNGC 6 cut(s) 169, 444, 459, 586, 1290, 1303
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 2 cut(s) 352, 986
Bme18I GGWCC 2 cut(s) 982, 988
BmgT120I GGNCC 2 cut(s) 982, 988
BmiI GGNNCC 2 cut(s) 1216, 1579
BmrFI CCNGG 2 cut(s) 352, 986
BmsI GCATC 4 cut(s) 636, 904, 987, 1058
BoxI GACNNNNGTC 1 cut(s) 1258
BpmI CTGGAG 1 cut(s) 856
Bpu10I CCTNAGC 2 cut(s) 978, 1035
BpuEI CTTGAG 2 cut(s) 644, 692
BpuMI CCSGG 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 1386
BsaI GGTCTC 2 cut(s) 21, 648
BsaJI CCNNGG 4 cut(s) 117, 288, 953, 1168
BsaWI WCCGGW 1 cut(s) 990
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 709, 723, 1497, 1588
Bse1I ACTGG 2 cut(s) 101, 227
Bse3DI GCAATG 2 cut(s) 1110, 1188
Bse8I GATNNNNATC 1 cut(s) 1386
BseAI TCCGGA 1 cut(s) 990
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 4 cut(s) 117, 288, 953, 1168
BseGI GGATG 4 cut(s) 274, 697, 1318, 1387
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 5 cut(s) 118, 709, 723, 1497, 1588
BseMI GCAATG 2 cut(s) 1110, 1188
BseMII CTCAG 4 cut(s) 247, 657, 1049, 1263
BseNI ACTGG 2 cut(s) 101, 227
BseRI GAGGAG 3 cut(s) 78, 81, 1565
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 6 cut(s) 179, 454, 469, 596, 1288, 1300
BsgI GTGCAG 3 cut(s) 549, 861, 1543
BshFI GGCC 3 cut(s) 122, 238, 958
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 2 cut(s) 351, 991
BslI CCNNNNNNNGG 5 cut(s) 118, 709, 723, 1497, 1588
BsmAI GTCTC 2 cut(s) 21, 648
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 3 cut(s) 122, 238, 958
Bso31I GGTCTC 2 cut(s) 21, 648
Bsp1286I GDGCHC 1 cut(s) 952
Bsp13I TCCGGA 1 cut(s) 990
Bsp143I GATC 4 cut(s) 56, 482, 933, 1539
Bsp19I CCATGG 1 cut(s) 1168
BspANI GGCC 3 cut(s) 122, 238, 958
BspCNI CTCAG 4 cut(s) 246, 658, 1048, 1264
BspEI TCCGGA 1 cut(s) 990
BspLI GGNNCC 2 cut(s) 1216, 1579
BspMI ACCTGC 2 cut(s) 521, 591
BspPI GGATC 2 cut(s) 490, 1547
BspTI CTTAAG 1 cut(s) 1175
BspTNI GGTCTC 2 cut(s) 21, 648
BsrDI GCAATG 2 cut(s) 1110, 1188
BsrI ACTGG 2 cut(s) 101, 227
BssECI CCNNGG 4 cut(s) 117, 288, 953, 1168
BssMI GATC 4 cut(s) 56, 482, 933, 1539
BssT1I CCWWGG 3 cut(s) 117, 288, 1168
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 4 cut(s) 575, 954, 974, 1427
BstAFI CTTAAG 1 cut(s) 1175
BstAPI GCANNNNNTGC 3 cut(s) 505, 590, 1187
BstC8I GCNNGC 2 cut(s) 367, 1595
BstDEI CTNAG 9 cut(s) 14, 233, 666, 866, 978, 1035, 1042, 1263, 1272
BstDSI CCRYGG 2 cut(s) 953, 1168
BstEII GGTNACC 1 cut(s) 394
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 4 cut(s) 274, 697, 1318, 1387
BstHHI GCGC 2 cut(s) 810, 1073
BstKTI GATC 4 cut(s) 59, 485, 936, 1542
BstMAI GTCTC 2 cut(s) 21, 648
BstMBI GATC 4 cut(s) 56, 482, 933, 1539
BstMWI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1187, 1594
BstNI CCWGG 1 cut(s) 986
BstNSI RCATGY 1 cut(s) 512
BstPAI GACNNNNGTC 1 cut(s) 1258
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 2 cut(s) 350, 984
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 6 cut(s) 179, 454, 469, 596, 1288, 1300
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 3 cut(s) 122, 238, 958
BtgI CCRYGG 2 cut(s) 953, 1168
BtsCI GGATG 4 cut(s) 274, 697, 1318, 1387
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 5 cut(s) 580, 738, 979, 1080, 1432
BveI ACCTGC 2 cut(s) 521, 591
Cac8I GCNNGC 2 cut(s) 367, 1595
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 2 cut(s) 810, 1073
Cfr13I GGNCC 2 cut(s) 982, 988
CsiI ACCWGGT 1 cut(s) 984
Csp6I GTAC 3 cut(s) 336, 800, 875
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 5 cut(s) 163, 509, 637, 1169, 1195
CviQI GTAC 3 cut(s) 336, 800, 875
DdeI CTNAG 9 cut(s) 14, 233, 666, 866, 978, 1035, 1042, 1263, 1272
DpnI GATC 4 cut(s) 58, 484, 935, 1541
DpnII GATC 4 cut(s) 56, 482, 933, 1539
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 1 cut(s) 956
Eco130I CCWWGG 3 cut(s) 117, 288, 1168
Eco147I AGGCCT 1 cut(s) 122
Eco31I GGTCTC 2 cut(s) 21, 648
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 2 cut(s) 982, 988
Eco57I CTGAAG 5 cut(s) 816, 1014, 1176, 1299, 1533
Eco91I GGTNACC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 982
EcoO65I GGTNACC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 1340
EcoRII CCWGG 1 cut(s) 984
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 3 cut(s) 117, 288, 1168
EcoT22I ATGCAT 1 cut(s) 651
ErhI CCWWGG 3 cut(s) 117, 288, 1168
FaeI CATG 5 cut(s) 166, 512, 640, 1172, 1198
FatI CATG 5 cut(s) 162, 508, 636, 1168, 1194
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 168, 443, 458, 585, 1289, 1302
FokI GGATG 4 cut(s) 281, 704, 1325, 1394
Fsp4HI GCNGC 6 cut(s) 168, 443, 458, 585, 1289, 1302
FspBI CTAG 5 cut(s) 684, 1083, 1373, 1440, 1451
GlaI GCGC 2 cut(s) 809, 1072
GluI GCNGC 6 cut(s) 168, 443, 458, 585, 1289, 1302
GsuI CTGGAG 1 cut(s) 856
HaeIII GGCC 3 cut(s) 122, 238, 958
HapII CCGG 2 cut(s) 351, 991
HhaI GCGC 2 cut(s) 810, 1073
Hin1II CATG 5 cut(s) 166, 512, 640, 1172, 1198
Hin6I GCGC 2 cut(s) 808, 1071
HinP1I GCGC 2 cut(s) 808, 1071
HinfI GANTC 2 cut(s) 430, 893
HpaII CCGG 2 cut(s) 351, 991
HphI GGTGA 4 cut(s) 101, 406, 548, 1493
Hpy166II GTNNAC 2 cut(s) 109, 950
Hpy188I TCNGA 5 cut(s) 435, 898, 1054, 1156, 1513
Hpy188III TCNNGA 8 cut(s) 60, 176, 761, 794, 835, 991, 1083, 1242
Hpy8I GTNNAC 2 cut(s) 109, 950
HpyAV CCTTC 5 cut(s) 713, 740, 895, 1126, 1411
HpyCH4III ACNGT 4 cut(s) 575, 954, 974, 1427
HpyF10VI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1187, 1594
HpyF3I CTNAG 9 cut(s) 14, 233, 666, 866, 978, 1035, 1042, 1263, 1272
Hsp92II CATG 5 cut(s) 166, 512, 640, 1172, 1198
HspAI GCGC 2 cut(s) 808, 1071
Kpn2I TCCGGA 1 cut(s) 990
Kzo9I GATC 4 cut(s) 56, 482, 933, 1539
LmnI GCTCC 4 cut(s) 68, 520, 796, 1322
Lsp1109I GCAGC 6 cut(s) 179, 454, 469, 596, 1288, 1300
LweI GCATC 4 cut(s) 636, 904, 987, 1058
MabI ACCWGGT 1 cut(s) 984
MaeI CTAG 5 cut(s) 684, 1083, 1373, 1440, 1451
MaeIII GTNAC 4 cut(s) 50, 322, 394, 1481
MalI GATC 4 cut(s) 58, 484, 935, 1541
MboI GATC 4 cut(s) 56, 482, 933, 1539
MboII GAAGA 4 cut(s) 755, 1006, 1169, 1172
MfeI CAATTG 1 cut(s) 1326
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 1 cut(s) 952
MlsI TGGCCA 1 cut(s) 958
MluCI AATT 9 cut(s) 143, 246, 314, 670, 1023, 1232, 1326, 1340, 1494
MluNI TGGCCA 1 cut(s) 958
Mox20I TGGCCA 1 cut(s) 958
Mph1103I ATGCAT 1 cut(s) 651
MroI TCCGGA 1 cut(s) 990
MroXI GAANNNNTTC 1 cut(s) 1027
MscI TGGCCA 1 cut(s) 958
MseI TTAA 1 cut(s) 1176
MslI CAYNNNNRTG 4 cut(s) 450, 573, 641, 1565
Msp20I TGGCCA 1 cut(s) 958
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 2 cut(s) 351, 991
MspR9I CCNGG 2 cut(s) 352, 986
MunI CAATTG 1 cut(s) 1326
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 986
MwoI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1187, 1594
NciI CCSGG 1 cut(s) 352
NcoI CCATGG 1 cut(s) 1168
NdeI CATATG 1 cut(s) 262
NdeII GATC 4 cut(s) 56, 482, 933, 1539
NlaIII CATG 5 cut(s) 166, 512, 640, 1172, 1198
NlaIV GGNNCC 2 cut(s) 1216, 1579
NmuCI GTSAC 3 cut(s) 322, 394, 1481
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 1 cut(s) 512
PaqCI CACCTGC 1 cut(s) 521
PceI AGGCCT 1 cut(s) 122
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 1027
PfeI GAWTC 2 cut(s) 430, 893
PflFI GACNNNGTC 1 cut(s) 986
PkrI GCNGC 6 cut(s) 169, 444, 459, 586, 1290, 1303
PpuMI RGGWCCY 1 cut(s) 982
PshAI GACNNNNGTC 1 cut(s) 1258
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 1 cut(s) 984
PspEI GGTNACC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 2 cut(s) 1216, 1579
PspPI GGNCC 2 cut(s) 982, 988
PspPPI RGGWCCY 1 cut(s) 982
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 986
RsaI GTAC 3 cut(s) 337, 801, 876
RsaNI GTAC 3 cut(s) 336, 800, 875
RseI CAYNNNNRTG 4 cut(s) 450, 573, 641, 1565
SaqAI TTAA 1 cut(s) 1176
SatI GCNGC 6 cut(s) 168, 443, 458, 585, 1289, 1302
Sau3AI GATC 4 cut(s) 56, 482, 933, 1539
Sau96I GGNCC 2 cut(s) 982, 988
ScaI AGTACT 1 cut(s) 801
ScrFI CCNGG 2 cut(s) 352, 986
SduI GDGCHC 1 cut(s) 952
SexAI ACCWGGT 1 cut(s) 984
SfaNI GCATC 4 cut(s) 636, 904, 987, 1058
SinI GGWCC 2 cut(s) 982, 988
SmiMI CAYNNNNRTG 4 cut(s) 450, 573, 641, 1565
SmlI CTYRAG 3 cut(s) 659, 707, 1175
SmoI CTYRAG 3 cut(s) 659, 707, 1175
Sse9I AATT 9 cut(s) 143, 246, 314, 670, 1023, 1232, 1326, 1340, 1494
SseBI AGGCCT 1 cut(s) 122
SspI AATATT 1 cut(s) 909
SspMI CTAG 5 cut(s) 684, 1083, 1373, 1440, 1451
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 350, 984
StyI CCWWGG 3 cut(s) 117, 288, 1168
TaaI ACNGT 4 cut(s) 575, 954, 974, 1427
TaqI TCGA 2 cut(s) 936, 1252
TasI AATT 9 cut(s) 143, 246, 314, 670, 1023, 1232, 1326, 1340, 1494
TatI WGTACW 2 cut(s) 335, 799
TfiI GAWTC 2 cut(s) 430, 893
Tru1I TTAA 1 cut(s) 1176
Tru9I TTAA 1 cut(s) 1176
TscAI CASTG 5 cut(s) 580, 738, 979, 1080, 1432
TseFI GTSAC 3 cut(s) 322, 394, 1481
TseI GCWGC 6 cut(s) 167, 442, 457, 584, 1288, 1301
Tsp45I GTSAC 3 cut(s) 322, 394, 1481
TspDTI ATGAA 8 cut(s) 625, 727, 1103, 1121, 1245, 1333, 1398, 1478
TspRI CASTG 5 cut(s) 580, 738, 979, 1080, 1432
Tth111I GACNNNGTC 1 cut(s) 986
Vha464I CTTAAG 1 cut(s) 1175
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 2 cut(s) 982, 988
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 2 cut(s) 670, 1340
XbaI TCTAGA 1 cut(s) 1082
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 1027
XspI CTAG 5 cut(s) 684, 1083, 1373, 1440, 1451
ZrmI AGTACT 1 cut(s) 801
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.