Rh5AG267700

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
35310922 .. 35316759
5838 bp
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UTR
Exon/CDS
Intron
Rh5AG267700.1

Sequence Viewer

Length: 1455 bp
ATGGGCAAGTGTCTAAGCAAAAGCAGAGACCCAGAGCCACAACATAATGGGTACAGATCAGGAGGAGGAGCTGGACAACATTACCAAAAACCCCGTGAGCCAGTTGCTCACCAATCCAAGGCCTCTGTTCAGCAACACCATCAATTACCAGAGAAGCGTGGCATGGCAGCCCATCAAGAACCCCAACCAGCTTGGAAGCCATCTGTTCCAGCCAGAAGCCCCAAACCAGTTCTCAGGCCAGACACAATTCTGGGGAAGCCATATGAGGATGTGAAGTTGCACTACACCTTGGGAAAAGAGTTGGGTAGAGGGCAATTTGGGGTCACATATCTTTGTACTGACATTTCAACCGGGAGGAAATATGCTTGCAAGTCAATCTCAAAGAGGAAGCTGGTGACCAAAAATGACAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAGCCAAACATTGTGGAGTTCAAGGGATCTTATGAGGATAAGCAGTCTGTGCATGTTTGTATGGAGCTTTGTGCAGGTGGTGAGCTTTTTGATAGGATTATTGCAAAGGGTCATTACAGTGAGAGAGCAGCTTCTGCAATATGCAGGTCAATTGTGAGTGTTGTGCATATCTGTCATTTCATGGGTGTGATGCATAGAGACCTCAAGCCTGAGAATTTCTTGCTGTCTAGCAAGGATGAGAATGCCCTTCTCAAGGCTACCGATTTCGGGTTGTCAGTGTTCATTGAAGAAGGAAAGGTGTATCGTGATATAGTTGGGAGTGCTTATTATGTTGCTCCTGAAGTACTACGGCGCAGATACGGCAAGGAAATAGATATCTGGAGTGCAGGAGTTATCCTGTATATTTTACTAAGTGGAGTACCTCCATTTTGGGCTGAATCGGAGAAGGGAATATTTGATGCCATATTGGAGGGAGTGATCGACTTTGATAGTGCACCGTGGCCATCAATATCACACAGTGCTAAGGACCTGGTCCGGAGGATGCTGACACAAGACCCTAAAAAGCGAATTACTTCAGCTCAGGTCTTAGAGCACCCGTGGCTCAAAGAAGAAGCATCAGACAAACCCATAGACAGCGCAGTGCTTTCTAGAATGAAGCAGTTTAGAGCAATGAACAAACTGAAAAAACTTGCATTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTCATGGGCTTAAGGCAATGTTTGCAAACATGGATACTGACAAGAGTGGAACCATCACTTATGATGAATTGAAGTCAGGATTGGCTCGACTTGGCTCTAAGCTGACTGAGGCTGAAGTCAAGCAGCTAATGGAAGCTGCTGATGTGGATGGGAATGGAGCAATTGACTACATTGAATTCATTACTGCTACAATGCACAGACACAAGCTAGAGAGGGACGAACATCTTTACAAAGCCTTCCAATATTTTGACACAGACAACAGTGGGTAA

Protein Analysis

484

Amino Acids

54.44

Weight (kDa)

8.44

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 95 - 353 4.3e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 349 5.9e-26 Protein tyrosine and serine/threonine kinase
EF-hand_1 PF00036 399 - 425 1e-06 EF hand domain
EF-hand_7 PF13499 399 - 459 5.2e-13 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 2 cut(s) 521, 591
AccIII TCCGGA 1 cut(s) 990
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 3 cut(s) 670, 1185, 1361
AcuI CTGAAG 4 cut(s) 816, 1014, 1197, 1320
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 4 cut(s) 53, 337, 801, 876
AfiI CCNNNNNNNGG 3 cut(s) 118, 709, 723
AflII CTTAAG 1 cut(s) 1196
AgsI TTSAA 6 cut(s) 348, 478, 743, 1153, 1258, 1361
AjnI CCWGG 1 cut(s) 984
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
Alw21I GWGCWC 2 cut(s) 952, 1050
Alw26I GTCTC 2 cut(s) 21, 648
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 1 cut(s) 490
AlwNI CAGNNNCTG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 990
AoxI GGCC 3 cut(s) 120, 236, 956
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 6 cut(s) 167, 442, 457, 584, 1309, 1322
ApoI RAATTY 3 cut(s) 670, 1185, 1361
Asp700I GAANNNNTTC 2 cut(s) 1027, 1185
AspLEI GCGC 2 cut(s) 810, 1094
AspS9I GGNCC 2 cut(s) 982, 988
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 3 cut(s) 101, 406, 548
AvaII GGWCC 2 cut(s) 982, 988
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 1 cut(s) 958
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
Bbv12I GWGCWC 2 cut(s) 952, 1050
BbvI GCAGC 6 cut(s) 179, 454, 469, 596, 1309, 1321
BccI CCATC 6 cut(s) 147, 180, 208, 967, 1247, 1328
BceAI ACGGC 2 cut(s) 821, 832
BciT130I CCWGG 1 cut(s) 986
BciVI GTATCC 1 cut(s) 1213
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 21, 648
BfaI CTAG 3 cut(s) 684, 1104, 1394
BfrI CTTAAG 1 cut(s) 1196
BfuAI ACCTGC 2 cut(s) 521, 591
BfuI GTATCC 1 cut(s) 1213
BisI GCNGC 6 cut(s) 168, 443, 458, 585, 1310, 1323
BlsI GCNGC 6 cut(s) 169, 444, 459, 586, 1311, 1324
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 2 cut(s) 352, 986
Bme18I GGWCC 2 cut(s) 982, 988
BmgT120I GGNCC 2 cut(s) 982, 988
BmiI GGNNCC 1 cut(s) 1237
BmrFI CCNGG 2 cut(s) 352, 986
BmsI GCATC 4 cut(s) 636, 904, 987, 1079
BpmI CTGGAG 1 cut(s) 856
Bpu10I CCTNAGC 2 cut(s) 978, 1035
BpuEI CTTGAG 2 cut(s) 644, 692
BpuMI CCSGG 1 cut(s) 352
BsaI GGTCTC 2 cut(s) 21, 648
BsaJI CCNNGG 4 cut(s) 117, 288, 953, 1052
BsaWI WCCGGW 1 cut(s) 990
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 709, 723
Bse1I ACTGG 2 cut(s) 101, 227
Bse3DI GCAATG 2 cut(s) 1131, 1209
BseAI TCCGGA 1 cut(s) 990
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 4 cut(s) 117, 288, 953, 1052
BseGI GGATG 4 cut(s) 274, 697, 1002, 1339
BseLI CCNNNNNNNGG 3 cut(s) 118, 709, 723
BseMI GCAATG 2 cut(s) 1131, 1209
BseMII CTCAG 4 cut(s) 247, 657, 1049, 1284
BseNI ACTGG 2 cut(s) 101, 227
BseRI GAGGAG 2 cut(s) 78, 81
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 6 cut(s) 179, 454, 469, 596, 1309, 1321
BsgI GTGCAG 2 cut(s) 549, 861
BshFI GGCC 3 cut(s) 122, 238, 958
BsiHKAI GWGCWC 2 cut(s) 952, 1050
BsiSI CCGG 2 cut(s) 351, 991
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 3 cut(s) 118, 709, 723
BsmAI GTCTC 2 cut(s) 21, 648
BsmFI GGGAC 1 cut(s) 1415
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 3 cut(s) 122, 238, 958
Bso31I GGTCTC 2 cut(s) 21, 648
Bsp1286I GDGCHC 2 cut(s) 952, 1050
Bsp13I TCCGGA 1 cut(s) 990
Bsp143I GATC 3 cut(s) 56, 482, 933
BspANI GGCC 3 cut(s) 122, 238, 958
BspCNI CTCAG 4 cut(s) 246, 658, 1048, 1285
BspEI TCCGGA 1 cut(s) 990
BspLI GGNNCC 1 cut(s) 1237
BspMI ACCTGC 2 cut(s) 521, 591
BspPI GGATC 1 cut(s) 490
BspTI CTTAAG 1 cut(s) 1196
BspTNI GGTCTC 2 cut(s) 21, 648
BsrDI GCAATG 2 cut(s) 1131, 1209
BsrI ACTGG 2 cut(s) 101, 227
BssECI CCNNGG 4 cut(s) 117, 288, 953, 1052
BssMI GATC 3 cut(s) 56, 482, 933
BssT1I CCWWGG 2 cut(s) 117, 288
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 4 cut(s) 575, 954, 974, 1448
BstAFI CTTAAG 1 cut(s) 1196
BstAPI GCANNNNNTGC 3 cut(s) 505, 590, 1208
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 9 cut(s) 14, 233, 666, 866, 978, 1035, 1042, 1284, 1293
BstDSI CCRYGG 2 cut(s) 953, 1052
BstEII GGTNACC 1 cut(s) 394
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 4 cut(s) 274, 697, 1002, 1339
BstHHI GCGC 2 cut(s) 810, 1094
BstKTI GATC 3 cut(s) 59, 485, 936
BstMAI GTCTC 2 cut(s) 21, 648
BstMBI GATC 3 cut(s) 56, 482, 933
BstMWI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1054, 1208
BstNI CCWGG 1 cut(s) 986
BstNSI RCATGY 1 cut(s) 512
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 2 cut(s) 350, 984
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 6 cut(s) 179, 454, 469, 596, 1309, 1321
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
BsuI GTATCC 1 cut(s) 1213
BsuRI GGCC 3 cut(s) 122, 238, 958
BtgI CCRYGG 2 cut(s) 953, 1052
BtsCI GGATG 4 cut(s) 274, 697, 1002, 1339
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 5 cut(s) 580, 738, 979, 1101, 1453
BveI ACCTGC 2 cut(s) 521, 591
Cac8I GCNNGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 2 cut(s) 810, 1094
Cfr13I GGNCC 2 cut(s) 982, 988
CsiI ACCWGGT 1 cut(s) 984
Csp6I GTAC 4 cut(s) 52, 336, 800, 875
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 5 cut(s) 163, 509, 637, 1190, 1216
CviQI GTAC 4 cut(s) 52, 336, 800, 875
DdeI CTNAG 9 cut(s) 14, 233, 666, 866, 978, 1035, 1042, 1284, 1293
DpnI GATC 3 cut(s) 58, 484, 935
DpnII GATC 3 cut(s) 56, 482, 933
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 1 cut(s) 956
Eco130I CCWWGG 2 cut(s) 117, 288
Eco147I AGGCCT 1 cut(s) 122
Eco31I GGTCTC 2 cut(s) 21, 648
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 2 cut(s) 982, 988
Eco57I CTGAAG 4 cut(s) 816, 1014, 1197, 1320
Eco91I GGTNACC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 982
EcoO65I GGTNACC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 1361
EcoRII CCWGG 1 cut(s) 984
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 2 cut(s) 117, 288
EcoT22I ATGCAT 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 117, 288
FaeI CATG 5 cut(s) 166, 512, 640, 1193, 1219
FaqI GGGAC 1 cut(s) 1415
FatI CATG 5 cut(s) 162, 508, 636, 1189, 1215
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 168, 443, 458, 585, 1310, 1323
FokI GGATG 4 cut(s) 281, 704, 1009, 1346
Fsp4HI GCNGC 6 cut(s) 168, 443, 458, 585, 1310, 1323
FspBI CTAG 3 cut(s) 684, 1104, 1394
GlaI GCGC 2 cut(s) 809, 1093
GluI GCNGC 6 cut(s) 168, 443, 458, 585, 1310, 1323
GsuI CTGGAG 1 cut(s) 856
HaeIII GGCC 3 cut(s) 122, 238, 958
HapII CCGG 2 cut(s) 351, 991
HhaI GCGC 2 cut(s) 810, 1094
Hin1II CATG 5 cut(s) 166, 512, 640, 1193, 1219
Hin6I GCGC 2 cut(s) 808, 1092
HinP1I GCGC 2 cut(s) 808, 1092
HinfI GANTC 2 cut(s) 430, 893
HpaII CCGG 2 cut(s) 351, 991
HphI GGTGA 3 cut(s) 101, 406, 548
Hpy166II GTNNAC 1 cut(s) 950
Hpy188I TCNGA 4 cut(s) 435, 898, 1075, 1177
Hpy188III TCNNGA 8 cut(s) 60, 176, 761, 794, 835, 991, 1104, 1263
Hpy8I GTNNAC 1 cut(s) 950
HpyAV CCTTC 5 cut(s) 713, 740, 895, 1147, 1432
HpyCH4III ACNGT 4 cut(s) 575, 954, 974, 1448
HpyF10VI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1054, 1208
HpyF3I CTNAG 9 cut(s) 14, 233, 666, 866, 978, 1035, 1042, 1284, 1293
Hsp92II CATG 5 cut(s) 166, 512, 640, 1193, 1219
HspAI GCGC 2 cut(s) 808, 1092
Kpn2I TCCGGA 1 cut(s) 990
Kzo9I GATC 3 cut(s) 56, 482, 933
LmnI GCTCC 4 cut(s) 68, 520, 796, 1343
Lsp1109I GCAGC 6 cut(s) 179, 454, 469, 596, 1309, 1321
LweI GCATC 4 cut(s) 636, 904, 987, 1079
MabI ACCWGGT 1 cut(s) 984
MaeI CTAG 3 cut(s) 684, 1104, 1394
MaeIII GTNAC 2 cut(s) 322, 394
MalI GATC 3 cut(s) 58, 484, 935
MboI GATC 3 cut(s) 56, 482, 933
MboII GAAGA 4 cut(s) 755, 1076, 1190, 1193
MfeI CAATTG 2 cut(s) 606, 1347
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 2 cut(s) 952, 1050
MlsI TGGCCA 1 cut(s) 958
MluNI TGGCCA 1 cut(s) 958
Mox20I TGGCCA 1 cut(s) 958
Mph1103I ATGCAT 1 cut(s) 651
MroI TCCGGA 1 cut(s) 990
MroXI GAANNNNTTC 2 cut(s) 1027, 1185
MscI TGGCCA 1 cut(s) 958
MseI TTAA 1 cut(s) 1197
MslI CAYNNNNRTG 3 cut(s) 450, 573, 641
Msp20I TGGCCA 1 cut(s) 958
MspCI CTTAAG 1 cut(s) 1196
MspI CCGG 2 cut(s) 351, 991
MspR9I CCNGG 2 cut(s) 352, 986
MunI CAATTG 2 cut(s) 606, 1347
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 986
MwoI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1054, 1208
NciI CCSGG 1 cut(s) 352
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 56, 482, 933
NlaIII CATG 5 cut(s) 166, 512, 640, 1193, 1219
NlaIV GGNNCC 1 cut(s) 1237
NmuCI GTSAC 2 cut(s) 322, 394
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 1 cut(s) 512
PaqCI CACCTGC 1 cut(s) 521
PceI AGGCCT 1 cut(s) 122
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 2 cut(s) 1027, 1185
PfeI GAWTC 2 cut(s) 430, 893
PflFI GACNNNGTC 1 cut(s) 986
PkrI GCNGC 6 cut(s) 169, 444, 459, 586, 1311, 1324
PpuMI RGGWCCY 1 cut(s) 982
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 1 cut(s) 984
PspEI GGTNACC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 1237
PspPI GGNCC 2 cut(s) 982, 988
PspPPI RGGWCCY 1 cut(s) 982
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 986
RsaI GTAC 4 cut(s) 53, 337, 801, 876
RsaNI GTAC 4 cut(s) 52, 336, 800, 875
RseI CAYNNNNRTG 3 cut(s) 450, 573, 641
SaqAI TTAA 1 cut(s) 1197
SatI GCNGC 6 cut(s) 168, 443, 458, 585, 1310, 1323
Sau3AI GATC 3 cut(s) 56, 482, 933
Sau96I GGNCC 2 cut(s) 982, 988
ScaI AGTACT 1 cut(s) 801
ScrFI CCNGG 2 cut(s) 352, 986
SduI GDGCHC 2 cut(s) 952, 1050
SexAI ACCWGGT 1 cut(s) 984
SfaNI GCATC 4 cut(s) 636, 904, 987, 1079
SinI GGWCC 2 cut(s) 982, 988
SmiMI CAYNNNNRTG 3 cut(s) 450, 573, 641
SmlI CTYRAG 3 cut(s) 659, 707, 1196
SmoI CTYRAG 3 cut(s) 659, 707, 1196
SseBI AGGCCT 1 cut(s) 122
SspI AATATT 2 cut(s) 909, 1430
SspMI CTAG 3 cut(s) 684, 1104, 1394
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 350, 984
StyI CCWWGG 2 cut(s) 117, 288
TaaI ACNGT 4 cut(s) 575, 954, 974, 1448
TaqI TCGA 2 cut(s) 936, 1273
TatI WGTACW 2 cut(s) 335, 799
TfiI GAWTC 2 cut(s) 430, 893
Tru1I TTAA 1 cut(s) 1197
Tru9I TTAA 1 cut(s) 1197
TscAI CASTG 5 cut(s) 580, 738, 979, 1101, 1453
TseFI GTSAC 2 cut(s) 322, 394
TseI GCWGC 6 cut(s) 167, 442, 457, 584, 1309, 1322
Tsp45I GTSAC 2 cut(s) 322, 394
TspDTI ATGAA 7 cut(s) 625, 727, 1124, 1142, 1178, 1266, 1354
TspRI CASTG 5 cut(s) 580, 738, 979, 1101, 1453
Tth111I GACNNNGTC 1 cut(s) 986
Vha464I CTTAAG 1 cut(s) 1196
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 2 cut(s) 982, 988
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 3 cut(s) 670, 1185, 1361
XbaI TCTAGA 1 cut(s) 1103
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 2 cut(s) 1027, 1185
XspI CTAG 3 cut(s) 684, 1104, 1394
ZrmI AGTACT 1 cut(s) 801
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.