FvH4_3g22730

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
15730243 .. 15735611
5369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22730.t2

Sequence Viewer

Length: 1626 bp
ATGGGCAAGTGTCTAAGCAAAAGCAGAGAGCCAGAGCCACAGCATAATGGGTACAGATCAGGTGGAGGAGCTGGAGCACATTACCAAAAACCCCATGAGCCAGTTGTTCACCAACCCAAAGCCTCTGCTCAGCAACACCATCAGATACCAGAGAAGCGTGGCATGGCTGCCCATCAAGAACCCCAACCAGCTTGGAAGCCATCTGTCCCAGCCAGACACCCCAAACCAGTTCACAGGCCAGATACCATTCTGGGGAAGCCATATGAGGATGTGAAGCTTCACTACACCTTGGGAAAGGAGTTGGGTAGAGGGCAATTTGGGGTTACTTATCTTTGTACTGAGAATTCAACTGGGATGAAATATGCTTGTAAGTCAATCTCAAAGAGGAAGCTGGTGACCAAAAATGACAAGGAGGATATAAAGAGGGAGATTCAGATTCTGCAGCATTTGAGTGGGCAGCCAAACATTGTGGAGTTCAAGGGGTCCTATGAGGATAAGCAGTCTGTGCATGTTTGTATGGAGCTTTGTGCTGGTGGGGAGCTTTTTGATAGGATTATTGCAAAGGGTCATTATAGTGAGAGAGCAGCTTCTGCAATATGCAGGTCAATTGTGAGTGTTGTGCATATCTGTCATTTCATGGGTGTGATGCATAGAGACCTCAAGCCTGAGAATTTCTTGCTGTCTAGCAAGGATGAGAATGCCCTTCTCAAGGCTACTGACTTCGGGTTGTCAGTGTTCATCGAAGAAGGAAAGGTGTATCGTGATATAGTTGGGAGTGCTTACTATGTTGCTCCTGAAGTACTGCGGCGCAGATATGGCAAGGAAATAGATATCTGGAGTGCAGGAGTTATTCTGTATATTTTACTAAGTGGAGTACCTCCATTTTGGGCTGAAACTGAGAAGGGAATATTTGATGCTATATTGGAGGGAGAGATTGACTTTGAGAGTGCACCATGGCCATCAATATCACACAGTGCTAAGGACCTGGTCCGGAGGATGCTGACACAAGACCCTAAAAAGCGCATTACTTCAGCTCAGGTTCTAGAGCACCCATGGATCAAGGAAGAAGCATCAGACAAACCCATAGATAGCGCAGTGCTTTCTAGAATGAAGCAGTTTAGAGCAATGAACAAACTTAAAAAACTTGCATTGAAGGTTATTGCTGAGAATCTTTCTGAAGAAGAAATCCATGGGCTTAAGGCAATGTTTGCAAACATGGATACTGACAAGAGTGGAACCATCACTTATGATGAACTGAAGTCAGGATTGGCTCGACTTGGCTCTAAGCTGACTGAGGCTGAAGTCAAGCAGCTAATGGAAGCTGCTGATGTGGATGGCAATGGAGGAATTGATTACATTGAATTCATTACTGCTACAATGCATAGACACAAGCTAGAGAGGGACGAACATCTTTACAAAGCCTTTCAATATTTTGACACAGACAACAGCGGGTTTATTACTAGAGATGAGCTAGAAAAAGCTATGAAAGAGTATGGAATGGGTGACGAAGCCACAATTCGGGATATTATATCTGAAGTAGATACAGATAATGATGGTAGGATCAACTACGAGGAGTTCTGCACAATGATGAGAAGTGGAACCCAACAGCAGGGCAAGCTATTTTAA

Protein Analysis

542

Amino Acids

61.08

Weight (kDa)

6.53

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 95 - 353 3.6e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 349 1.3e-26 Protein tyrosine and serine/threonine kinase
EF-hand_7 PF13499 399 - 459 8.6e-13 EF-hand domain pair
EF-hand_1 PF00036 399 - 425 1.2e-06 EF hand domain
EF-hand_7 PF13499 469 - 539 1.4e-12 EF-hand domain pair
EF-hand_1 PF00036 471 - 497 4.7e-07 EF hand domain
EF-hand_6 PF13405 471 - 499 1.2e-07 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AccIII TCCGGA 1 cut(s) 990
AciI CCGC 2 cut(s) 805, 1449
AclWI GGATC 2 cut(s) 1064, 1568
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 3 cut(s) 343, 670, 1361
AcuI CTGAAG 6 cut(s) 816, 1014, 1197, 1277, 1320, 1554
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 4 cut(s) 53, 337, 801, 876
AfiI CCNNNNNNNGG 4 cut(s) 252, 709, 1518, 1609
AflII CTTAAG 1 cut(s) 1196
AgsI TTSAA 5 cut(s) 348, 478, 1153, 1361, 1427
AjnI CCWGG 1 cut(s) 984
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
Alw21I GWGCWC 3 cut(s) 79, 952, 1050
Alw26I GTCTC 1 cut(s) 648
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 2 cut(s) 1064, 1568
AlwNI CAGNNNCTG 2 cut(s) 439, 590
Aor13HI TCCGGA 1 cut(s) 990
AoxI GGCC 2 cut(s) 236, 956
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 6 cut(s) 167, 442, 457, 584, 1309, 1322
ApoI RAATTY 3 cut(s) 343, 670, 1361
AspLEI GCGC 3 cut(s) 810, 1023, 1094
AspS9I GGNCC 3 cut(s) 483, 982, 988
AsuHPI GGTGA 3 cut(s) 101, 406, 1514
AvaII GGWCC 3 cut(s) 483, 982, 988
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 1 cut(s) 958
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
Bbv12I GWGCWC 3 cut(s) 79, 952, 1050
BbvI GCAGC 6 cut(s) 154, 454, 469, 596, 1309, 1321
BccI CCATC 7 cut(s) 147, 180, 208, 967, 1247, 1328, 1547
BciT130I CCWGG 1 cut(s) 986
BciVI GTATCC 1 cut(s) 1213
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 6 cut(s) 684, 1043, 1104, 1394, 1461, 1472
BfmI CTRYAG 1 cut(s) 440
BfrI CTTAAG 1 cut(s) 1196
BfuAI ACCTGC 1 cut(s) 591
BfuI GTATCC 1 cut(s) 1213
BisI GCNGC 7 cut(s) 168, 443, 458, 585, 806, 1310, 1323
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 7 cut(s) 169, 444, 459, 586, 807, 1311, 1324
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 1 cut(s) 986
Bme18I GGWCC 3 cut(s) 483, 982, 988
BmgT120I GGNCC 3 cut(s) 483, 982, 988
BmiI GGNNCC 3 cut(s) 484, 1237, 1600
BmrFI CCNGG 1 cut(s) 986
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 4 cut(s) 636, 904, 987, 1079
BmuI ACTGGG 1 cut(s) 360
BpmI CTGGAG 2 cut(s) 93, 856
Bpu10I CCTNAGC 2 cut(s) 978, 1035
Bpu1102I GCTNAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 644, 692
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 4 cut(s) 288, 953, 1052, 1189
BsaWI WCCGGW 1 cut(s) 990
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 709, 1518, 1609
Bse1I ACTGG 3 cut(s) 101, 227, 355
Bse3DI GCAATG 3 cut(s) 1131, 1209, 1345
BseAI TCCGGA 1 cut(s) 990
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 4 cut(s) 288, 953, 1052, 1189
BseGI GGATG 5 cut(s) 274, 360, 697, 1002, 1339
BseLI CCNNNNNNNGG 4 cut(s) 252, 709, 1518, 1609
BseMI GCAATG 3 cut(s) 1131, 1209, 1345
BseMII CTCAG 7 cut(s) 143, 330, 657, 888, 1049, 1155, 1284
BseNI ACTGG 3 cut(s) 101, 227, 355
BseRI GAGGAG 2 cut(s) 81, 1586
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 6 cut(s) 154, 454, 469, 596, 1309, 1321
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 2 cut(s) 861, 1564
BshFI GGCC 2 cut(s) 238, 958
BsiHKAI GWGCWC 3 cut(s) 79, 952, 1050
BsiSI CCGG 1 cut(s) 991
BslFI GGGAC 2 cut(s) 191, 1415
BslI CCNNNNNNNGG 4 cut(s) 252, 709, 1518, 1609
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 2 cut(s) 191, 1415
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 238, 958
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 3 cut(s) 79, 952, 1050
Bsp13I TCCGGA 1 cut(s) 990
Bsp143I GATC 3 cut(s) 56, 1056, 1560
Bsp1720I GCTNAGC 1 cut(s) 129
Bsp19I CCATGG 3 cut(s) 953, 1052, 1189
BspACI CCGC 2 cut(s) 805, 1449
BspANI GGCC 2 cut(s) 238, 958
BspCNI CTCAG 7 cut(s) 142, 331, 658, 889, 1048, 1156, 1285
BspEI TCCGGA 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 484, 1237, 1600
BspMAI CTGCAG 1 cut(s) 444
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 2 cut(s) 1064, 1568
BspTI CTTAAG 1 cut(s) 1196
BspTNI GGTCTC 1 cut(s) 648
BsrDI GCAATG 3 cut(s) 1131, 1209, 1345
BsrI ACTGG 3 cut(s) 101, 227, 355
BssECI CCNNGG 4 cut(s) 288, 953, 1052, 1189
BssMI GATC 3 cut(s) 56, 1056, 1560
BssT1I CCWWGG 4 cut(s) 288, 953, 1052, 1189
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 1 cut(s) 974
BstAFI CTTAAG 1 cut(s) 1196
BstAPI GCANNNNNTGC 3 cut(s) 505, 590, 1208
BstC8I GCNNGC 1 cut(s) 1616
BstDSI CCRYGG 3 cut(s) 953, 1052, 1189
BstEII GGTNACC 1 cut(s) 394
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 5 cut(s) 274, 360, 697, 1002, 1339
BstHHI GCGC 3 cut(s) 810, 1023, 1094
BstKTI GATC 3 cut(s) 59, 1059, 1563
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 3 cut(s) 56, 1056, 1560
BstMWI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1208, 1615
BstNI CCWGG 1 cut(s) 986
BstNSI RCATGY 1 cut(s) 512
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 984
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 6 cut(s) 154, 454, 469, 596, 1309, 1321
BsuI GTATCC 1 cut(s) 1213
BsuRI GGCC 2 cut(s) 238, 958
BtgI CCRYGG 3 cut(s) 953, 1052, 1189
BtsCI GGATG 5 cut(s) 274, 360, 697, 1002, 1339
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 3 cut(s) 738, 979, 1101
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 1616
CaiI CAGNNNCTG 2 cut(s) 439, 590
CfoI GCGC 3 cut(s) 810, 1023, 1094
Cfr13I GGNCC 3 cut(s) 483, 982, 988
CsiI ACCWGGT 1 cut(s) 984
Csp6I GTAC 4 cut(s) 52, 336, 800, 875
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 8 cut(s) 95, 163, 509, 637, 954, 1053, 1190, 1216
CviQI GTAC 4 cut(s) 52, 336, 800, 875
DpnI GATC 3 cut(s) 58, 1058, 1562
DpnII GATC 3 cut(s) 56, 1056, 1560
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 1 cut(s) 956
Eco130I CCWWGG 4 cut(s) 288, 953, 1052, 1189
Eco31I GGTCTC 1 cut(s) 648
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 3 cut(s) 483, 982, 988
Eco57I CTGAAG 6 cut(s) 816, 1014, 1197, 1277, 1320, 1554
Eco91I GGTNACC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 2 cut(s) 483, 982
EcoO65I GGTNACC 1 cut(s) 394
EcoRI GAATTC 2 cut(s) 343, 1361
EcoRII CCWGG 1 cut(s) 984
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 4 cut(s) 288, 953, 1052, 1189
EcoT22I ATGCAT 2 cut(s) 651, 1383
ErhI CCWWGG 4 cut(s) 288, 953, 1052, 1189
FaeI CATG 8 cut(s) 98, 166, 512, 640, 957, 1056, 1193, 1219
FaqI GGGAC 2 cut(s) 191, 1415
FatI CATG 8 cut(s) 94, 162, 508, 636, 953, 1052, 1189, 1215
FauI CCCGC 1 cut(s) 1442
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 7 cut(s) 168, 443, 458, 585, 806, 1310, 1323
FokI GGATG 5 cut(s) 281, 367, 704, 1009, 1346
Fsp4HI GCNGC 7 cut(s) 168, 443, 458, 585, 806, 1310, 1323
FspBI CTAG 6 cut(s) 684, 1043, 1104, 1394, 1461, 1472
GlaI GCGC 3 cut(s) 809, 1022, 1093
GluI GCNGC 7 cut(s) 168, 443, 458, 585, 806, 1310, 1323
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 2 cut(s) 93, 856
HaeIII GGCC 2 cut(s) 238, 958
HapII CCGG 1 cut(s) 991
HhaI GCGC 3 cut(s) 810, 1023, 1094
Hin1II CATG 8 cut(s) 98, 166, 512, 640, 957, 1056, 1193, 1219
Hin6I GCGC 3 cut(s) 808, 1021, 1092
HinP1I GCGC 3 cut(s) 808, 1021, 1092
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 430, 436, 1168
HpaII CCGG 1 cut(s) 991
HphI GGTGA 3 cut(s) 101, 406, 1514
Hpy166II GTNNAC 3 cut(s) 109, 232, 950
Hpy188I TCNGA 5 cut(s) 144, 435, 1075, 1177, 1534
Hpy188III TCNNGA 9 cut(s) 176, 761, 794, 835, 991, 1043, 1104, 1263, 1520
Hpy8I GTNNAC 3 cut(s) 109, 232, 950
HpyAV CCTTC 4 cut(s) 713, 740, 895, 1147
HpyCH4III ACNGT 1 cut(s) 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1208, 1615
Hsp92II CATG 8 cut(s) 98, 166, 512, 640, 957, 1056, 1193, 1219
HspAI GCGC 3 cut(s) 808, 1021, 1092
Kpn2I TCCGGA 1 cut(s) 990
Kzo9I GATC 3 cut(s) 56, 1056, 1560
LmnI GCTCC 5 cut(s) 68, 74, 520, 538, 796
Lsp1109I GCAGC 6 cut(s) 154, 454, 469, 596, 1309, 1321
LweI GCATC 4 cut(s) 636, 904, 987, 1079
MabI ACCWGGT 1 cut(s) 984
MaeI CTAG 6 cut(s) 684, 1043, 1104, 1394, 1461, 1472
MaeIII GTNAC 3 cut(s) 322, 394, 1502
MalI GATC 3 cut(s) 58, 1058, 1562
MboI GATC 3 cut(s) 56, 1056, 1560
MboII GAAGA 4 cut(s) 755, 1076, 1190, 1193
MfeI CAATTG 1 cut(s) 606
MhlI GDGCHC 3 cut(s) 79, 952, 1050
MlsI TGGCCA 1 cut(s) 958
MluCI AATT 7 cut(s) 314, 343, 606, 670, 1347, 1361, 1515
MluNI TGGCCA 1 cut(s) 958
Mox20I TGGCCA 1 cut(s) 958
Mph1103I ATGCAT 2 cut(s) 651, 1383
MroI TCCGGA 1 cut(s) 990
MscI TGGCCA 1 cut(s) 958
MseI TTAA 3 cut(s) 1137, 1197, 1624
MslI CAYNNNNRTG 4 cut(s) 450, 573, 641, 1586
Msp20I TGGCCA 1 cut(s) 958
MspA1I CMGCKG 1 cut(s) 1449
MspCI CTTAAG 1 cut(s) 1196
MspI CCGG 1 cut(s) 991
MspR9I CCNGG 1 cut(s) 986
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 986
MwoI GCNNNNNNNGC 5 cut(s) 505, 590, 816, 1208, 1615
NcoI CCATGG 3 cut(s) 953, 1052, 1189
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 56, 1056, 1560
NlaIII CATG 8 cut(s) 98, 166, 512, 640, 957, 1056, 1193, 1219
NlaIV GGNNCC 3 cut(s) 484, 1237, 1600
NmuCI GTSAC 2 cut(s) 394, 1502
NsiI ATGCAT 2 cut(s) 651, 1383
NspI RCATGY 1 cut(s) 512
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 3 cut(s) 430, 436, 1168
PflFI GACNNNGTC 1 cut(s) 986
PkrI GCNGC 7 cut(s) 169, 444, 459, 586, 807, 1311, 1324
PpuMI RGGWCCY 2 cut(s) 483, 982
Psp5II RGGWCCY 2 cut(s) 483, 982
Psp6I CCWGG 1 cut(s) 984
PspEI GGTNACC 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 3 cut(s) 484, 1237, 1600
PspPI GGNCC 3 cut(s) 483, 982, 988
PspPPI RGGWCCY 2 cut(s) 483, 982
PstI CTGCAG 1 cut(s) 444
PstNI CAGNNNCTG 2 cut(s) 439, 590
PsyI GACNNNGTC 1 cut(s) 986
RsaI GTAC 4 cut(s) 53, 337, 801, 876
RsaNI GTAC 4 cut(s) 52, 336, 800, 875
RseI CAYNNNNRTG 4 cut(s) 450, 573, 641, 1586
SaqAI TTAA 3 cut(s) 1137, 1197, 1624
SatI GCNGC 7 cut(s) 168, 443, 458, 585, 806, 1310, 1323
Sau3AI GATC 3 cut(s) 56, 1056, 1560
Sau96I GGNCC 3 cut(s) 483, 982, 988
ScaI AGTACT 1 cut(s) 801
ScrFI CCNGG 1 cut(s) 986
SduI GDGCHC 3 cut(s) 79, 952, 1050
SexAI ACCWGGT 1 cut(s) 984
SfaNI GCATC 4 cut(s) 636, 904, 987, 1079
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 3 cut(s) 483, 982, 988
SmiMI CAYNNNNRTG 4 cut(s) 450, 573, 641, 1586
SmlI CTYRAG 3 cut(s) 659, 707, 1196
SmoI CTYRAG 3 cut(s) 659, 707, 1196
Sse9I AATT 7 cut(s) 314, 343, 606, 670, 1347, 1361, 1515
SsiI CCGC 2 cut(s) 805, 1449
SspI AATATT 2 cut(s) 909, 1430
SspMI CTAG 6 cut(s) 684, 1043, 1104, 1394, 1461, 1472
StyD4I CCNGG 1 cut(s) 984
StyI CCWWGG 4 cut(s) 288, 953, 1052, 1189
TaaI ACNGT 1 cut(s) 974
TaqI TCGA 2 cut(s) 741, 1273
TasI AATT 7 cut(s) 314, 343, 606, 670, 1347, 1361, 1515
TatI WGTACW 2 cut(s) 335, 799
TauI GCSGC 1 cut(s) 808
TfiI GAWTC 3 cut(s) 430, 436, 1168
Tru1I TTAA 3 cut(s) 1137, 1197, 1624
Tru9I TTAA 3 cut(s) 1137, 1197, 1624
TscAI CASTG 3 cut(s) 738, 979, 1101
TseFI GTSAC 2 cut(s) 394, 1502
TseI GCWGC 6 cut(s) 167, 442, 457, 584, 1309, 1322
Tsp45I GTSAC 2 cut(s) 394, 1502
TspDTI ATGAA 8 cut(s) 371, 625, 727, 1124, 1142, 1266, 1354, 1499
TspRI CASTG 3 cut(s) 738, 979, 1101
Tth111I GACNNNGTC 1 cut(s) 986
Vha464I CTTAAG 1 cut(s) 1196
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 3 cut(s) 483, 982, 988
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 3 cut(s) 343, 670, 1361
XbaI TCTAGA 2 cut(s) 1042, 1103
XceI RCATGY 1 cut(s) 512
XspI CTAG 6 cut(s) 684, 1043, 1104, 1394, 1461, 1472
ZrmI AGTACT 1 cut(s) 801
Zsp2I ATGCAT 2 cut(s) 651, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.