AT3G20410

calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7115819 .. 7119144
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20410.1

Sequence Viewer

Length: 1626 bp
ATGGGAAATTGTTTTGCCAAGAACCATGGATTGATGAAGCCACAGCAAAATGGTAATACCACTAGATCAGTTGAAGTAGGAGTAACCAACCAAGATCCACCGTCGTATACTCCACAAGCGAGAACCACTCAGCAGCCGGAGAAACCAGGTTCCGTGAATAGTCAACCACCACCGTGGAGGGCGGCGGCTGCAGCACCAGGACTAAGTCCCAAGACCACCACTAAGAGCAATTCAATACTAGAGAACGCTTTCGAAGACGTGAAGCTCTTTTACACATTGGGTAAAGAGCTAGGTCGTGGTCAATTTGGGGTAACGTATCTGTGCACAGAGAATTCCACGGGGAAGAAGTACGCTTGCAAATCGATCTCGAAGAAGAAGCTGGTGACTAAAGCTGATAAGGATGATATGAGGAGAGAGATTCAGATAATGCAGCATTTGAGTGGGCAGCCTAATATTGTGGAGTTTAAAGGAGCTTATGAGGATGAGAAAGCTGTGAATTTGGTGATGGAGCTTTGTGCTGGTGGTGAATTGTTTGATAGAATCATTGCTAAGGGACATTACACTGAGAGAGCTGCTGCTTCTGTTTGTAGACAGATTGTGAATGTTGTCAAGATTTGTCATTTCATGGGTGTGTTGCATAGAGACTTGAAGCCTGAGAATTTCTTGCTCTCTAGCAAAGATGAGAAGGCTTTGATCAAGGCTACTGATTTCGGATTGTCTGTCTTTATTGAAGAGGGAAAAGTATATAGAGATATTGTTGGGAGTGCATACTATGTTGCTCCAGAAGTCTTACGTCGCAGATATGGGAAAGAAGTTGATATCTGGAGTGCTGGAATCATCTTATACATTCTACTCAGCGGTGTGCCCCCGTTTTGGGCTGAGACTGAGAAAGGAATATTTGATGCTATATTGGAAGGCCATATCGACTTTGAGAGCCAACCATGGCCGTCAATCTCCAGCAGTGCCAAAGATTTGGTACGTAGAATGTTGACTGCGGATCCAAAAAGGCGGATTTCTGCTGCTGATGTTCTTCAGCATCCATGGCTTAGAGAAGGTGGAGAAGCATCAGACAAGCCAATTGACAGTGCTGTTCTCTCAAGGATGAAACAATTTAGAGCAATGAATAAGCTAAAGAAACTTGCTTTAAAGGTCATAGCGGAGAATATTGACACGGAAGAAATCCAAGGATTGAAGGCAATGTTTGCTAACATAGACACTGACAACAGTGGCACAATCACTTATGAAGAACTGAAAGAAGGATTAGCCAAATTGGGATCTAAACTCACAGAGGCAGAAGTGAAACAGCTCATGGATGCTGCTGATGTTGATGGGAACGGGTCCATCGACTACATAGAGTTTATTACAGCAACAATGCATAGGCACAGGCTTGAAAGTAATGAGAATCTTTACAAAGCTTTCCAGCATTTTGACAAAGACAGCAGCGGATACATTACAATAGACGAACTGGAATCTGCATTGAAGGAATATGGAATGGGAGATGATGCAACAATCAAAGAGGTTTTGTCAGATGTCGACTCCGATAACGATGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGGAAATCCACAACAACAACAACCTCGGCTGTTCTAG

Protein Analysis

541

Amino Acids

60.36

Weight (kDa)

5.83

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 91 - 349 1.1e-78 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 92 - 344 2.8e-30 Protein tyrosine and serine/threonine kinase
EF-hand_7 PF13499 396 - 457 3.2e-14 EF-hand domain pair
EF-hand_1 PF00036 397 - 424 4.3e-07 EF hand domain
EF-hand_8 PF13833 409 - 456 2.4e-06 EF-hand domain pair
EF-hand_7 PF13499 467 - 529 3e-17 EF-hand domain pair
EF-hand_6 PF13405 469 - 497 3e-07 EF-hand domain
EF-hand_1 PF00036 470 - 495 1.2e-06 EF hand domain
EF-hand_1 PF00036 504 - 530 2.1e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1576
AccI GTMKAC 3 cut(s) 107, 589, 1533
AciI CCGC 7 cut(s) 182, 185, 858, 995, 1009, 1157, 1443
AclWI GGATC 4 cut(s) 89, 992, 1005, 1282
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 3 cut(s) 331, 496, 658
AcuI CTGAAG 1 cut(s) 1016
AfaI GTAC 2 cut(s) 350, 978
AfiI CCNNNNNNNGG 2 cut(s) 873, 874
AgsI TTSAA 7 cut(s) 74, 234, 649, 731, 1192, 1391, 1480
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 2 cut(s) 145, 196
AleI CACNNNNGTG 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 636, 875
Alw44I GTGCAC 1 cut(s) 322
AlwI GGATC 4 cut(s) 89, 992, 1005, 1282
AoxI GGCC 2 cut(s) 916, 944
ApaLI GTGCAC 1 cut(s) 322
ApoI RAATTY 3 cut(s) 331, 496, 658
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 1577
AspS9I GGNCC 1 cut(s) 1338
AsuHPI GGTGA 3 cut(s) 394, 514, 536
AsuII TTCGAA 1 cut(s) 252
AvaII GGWCC 1 cut(s) 1338
BaeGI GKGCMC 2 cut(s) 326, 867
BamHI GGATCC 1 cut(s) 997
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 326
BccI CCATC 4 cut(s) 499, 1322, 1349, 1541
BceAI ACGGC 1 cut(s) 931
BciT130I CCWGG 2 cut(s) 147, 198
BciVI GTATCC 1 cut(s) 1439
BclI TGATCA 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 636, 875
BfaI CTAG 5 cut(s) 63, 239, 290, 672, 1624
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 1439
Bme1390I CCNGG 2 cut(s) 147, 198
Bme18I GGWCC 1 cut(s) 1338
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 1338
BmiI GGNNCC 3 cut(s) 151, 999, 1339
BmrFI CCNGG 2 cut(s) 147, 198
BmsI GCATC 5 cut(s) 892, 1045, 1073, 1303, 1492
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 3 cut(s) 765, 844, 940
Bpu10I CCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 1081
Bsa29I ATCGAT 1 cut(s) 362
BsaAI YACGTR 1 cut(s) 980
BsaJI CCNNGG 7 cut(s) 25, 173, 336, 941, 1040, 1183, 1613
Bsc4I CCNNNNNNNGG 2 cut(s) 873, 874
Bse1I ACTGG 1 cut(s) 1470
Bse3DI GCAATG 4 cut(s) 543, 1125, 1203, 1584
BseBI CCWGG 2 cut(s) 147, 198
BseCI ATCGAT 1 cut(s) 362
BseDI CCNNGG 7 cut(s) 25, 173, 336, 941, 1040, 1183, 1613
BseGI GGATG 5 cut(s) 406, 487, 1036, 1107, 1318
BseLI CCNNNNNNNGG 2 cut(s) 873, 874
BseMI GCAATG 4 cut(s) 543, 1125, 1203, 1584
BseMII CTCAG 6 cut(s) 143, 555, 645, 868, 870, 876
BseNI ACTGG 1 cut(s) 1470
BseRI GAGGAG 1 cut(s) 424
BseSI GKGCMC 2 cut(s) 326, 867
BshFI GGCC 2 cut(s) 918, 946
BshVI ATCGAT 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 192, 567
BslI CCNNNNNNNGG 2 cut(s) 873, 874
BsmAI GTCTC 2 cut(s) 636, 875
BsmFI GGGAC 2 cut(s) 192, 567
BsnI GGCC 2 cut(s) 918, 946
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 326, 867
Bsp143I GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
Bsp19I CCATGG 3 cut(s) 25, 941, 1040
BspACI CCGC 7 cut(s) 182, 185, 858, 995, 1009, 1157, 1443
BspANI GGCC 2 cut(s) 918, 946
BspCNI CTCAG 6 cut(s) 142, 556, 646, 867, 871, 877
BspDI ATCGAT 1 cut(s) 362
BspLI GGNNCC 3 cut(s) 151, 999, 1339
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 4 cut(s) 89, 992, 1005, 1282
BspT104I TTCGAA 1 cut(s) 252
BsrDI GCAATG 4 cut(s) 543, 1125, 1203, 1584
BsrI ACTGG 1 cut(s) 1470
BssECI CCNNGG 7 cut(s) 25, 173, 336, 941, 1040, 1183, 1613
BssMI GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
BssNAI GTATAC 1 cut(s) 108
BssT1I CCWWGG 4 cut(s) 25, 941, 1040, 1183
Bst1107I GTATAC 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 147, 198
Bst4CI ACNGT 4 cut(s) 102, 174, 1085, 1226
Bst6I CTCTTC 2 cut(s) 726, 1560
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstBAI YACGTR 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 355
BstDSI CCRYGG 5 cut(s) 25, 173, 336, 941, 1040
BstF5I GGATG 5 cut(s) 406, 487, 1036, 1107, 1318
BstHHI GCGC 1 cut(s) 1577
BstKTI GATC 6 cut(s) 68, 97, 366, 696, 1000, 1277
BstMAI GTCTC 2 cut(s) 636, 875
BstMBI GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
BstMWI GCNNNNNNNGC 4 cut(s) 188, 191, 1042, 1202
BstNI CCWGG 2 cut(s) 147, 198
BstSCI CCNGG 2 cut(s) 145, 196
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 2 cut(s) 326, 867
BstSNI TACGTA 1 cut(s) 980
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 3 cut(s) 94, 997, 1274
BstXI CCANNNNNNTGG 2 cut(s) 174, 973
BstYI RGATCY 3 cut(s) 94, 997, 1274
BstZ17I GTATAC 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 362
BsuI GTATCC 1 cut(s) 1439
BsuRI GGCC 2 cut(s) 918, 946
BsuTUI ATCGAT 1 cut(s) 362
BtgI CCRYGG 5 cut(s) 25, 173, 336, 941, 1040
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 5 cut(s) 406, 487, 1036, 1107, 1318
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 5 cut(s) 561, 967, 1090, 1215, 1231
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 1577
Cfr13I GGNCC 1 cut(s) 1338
ClaI ATCGAT 1 cut(s) 362
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 2 cut(s) 349, 977
CviAII CATG 5 cut(s) 26, 625, 942, 1041, 1309
CviQI GTAC 2 cut(s) 349, 977
DpnI GATC 6 cut(s) 67, 96, 365, 695, 999, 1276
DpnII GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
DraI TTTAAA 2 cut(s) 466, 1146
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 2 cut(s) 726, 1560
EarI CTCTTC 2 cut(s) 726, 1560
EciI GGCGGA 1 cut(s) 1024
Eco105I TACGTA 1 cut(s) 980
Eco130I CCWWGG 4 cut(s) 25, 941, 1040, 1183
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 1338
Eco57I CTGAAG 1 cut(s) 1016
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 145, 196
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 4 cut(s) 25, 941, 1040, 1183
EcoT22I ATGCAT 1 cut(s) 1377
ErhI CCWWGG 4 cut(s) 25, 941, 1040, 1183
FaeI CATG 5 cut(s) 29, 628, 945, 1044, 1312
FaqI GGGAC 2 cut(s) 192, 567
FatI CATG 5 cut(s) 25, 624, 941, 1040, 1308
FbaI TGATCA 1 cut(s) 693
FblI GTMKAC 3 cut(s) 107, 589, 1533
FokI GGATG 5 cut(s) 413, 494, 1023, 1114, 1325
FspBI CTAG 5 cut(s) 63, 239, 290, 672, 1624
FspI TGCGCA 1 cut(s) 1576
GlaI GCGC 1 cut(s) 1576
GsuI CTGGAG 3 cut(s) 765, 844, 940
HaeIII GGCC 2 cut(s) 918, 946
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 1577
Hin1II CATG 5 cut(s) 29, 628, 945, 1044, 1312
Hin6I GCGC 1 cut(s) 1575
HinP1I GCGC 1 cut(s) 1575
HincII GTYRAC 3 cut(s) 164, 990, 1534
HindII GTYRAC 3 cut(s) 164, 990, 1534
HindIII AAGCTT 1 cut(s) 1413
HinfI GANTC 7 cut(s) 418, 540, 834, 1402, 1469, 1535, 1554
HpaII CCGG 1 cut(s) 137
HphI GGTGA 3 cut(s) 394, 514, 536
Hpy166II GTNNAC 6 cut(s) 108, 164, 324, 590, 990, 1534
Hpy188I TCNGA 5 cut(s) 423, 713, 1069, 1528, 1540
Hpy188III TCNNGA 4 cut(s) 367, 610, 782, 823
Hpy8I GTNNAC 6 cut(s) 108, 164, 324, 590, 990, 1534
Hpy99I CGWCG 2 cut(s) 106, 798
HpyAV CCTTC 6 cut(s) 679, 908, 1046, 1186, 1250, 1474
HpyCH4III ACNGT 4 cut(s) 102, 174, 1085, 1226
HpyCH4IV ACGT 4 cut(s) 258, 314, 793, 979
HpyCH4V TGCA 9 cut(s) 191, 324, 357, 430, 637, 767, 1375, 1475, 1505
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 191, 1042, 1202
HpySE526I ACGT 4 cut(s) 258, 314, 793, 979
Hsp92II CATG 5 cut(s) 29, 628, 945, 1044, 1312
HspAI GCGC 1 cut(s) 1575
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
LmnI GCTCC 3 cut(s) 470, 508, 784
LweI GCATC 5 cut(s) 892, 1045, 1073, 1303, 1492
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 5 cut(s) 63, 239, 290, 672, 1624
MaeII ACGT 4 cut(s) 258, 314, 793, 979
MaeIII GTNAC 3 cut(s) 82, 310, 382
MalI GATC 6 cut(s) 67, 96, 365, 695, 999, 1276
MboI GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
MboII GAAGA 9 cut(s) 266, 355, 382, 385, 743, 1022, 1187, 1256, 1577
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 3 cut(s) 94, 997, 1274
MhlI GDGCHC 2 cut(s) 326, 867
MlyI GAGTC 1 cut(s) 1529
MnlI CCTC 7 cut(s) 171, 402, 472, 727, 1282, 1510, 1623
Mph1103I ATGCAT 1 cut(s) 1377
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 2 cut(s) 465, 1145
MslI CAYNNNNRTG 3 cut(s) 172, 438, 629
MspA1I CMGCKG 2 cut(s) 858, 1443
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 147, 198
MunI CAATTG 1 cut(s) 1077
MvaI CCWGG 2 cut(s) 147, 198
MwoI GCNNNNNNNGC 4 cut(s) 188, 191, 1042, 1202
NcoI CCATGG 3 cut(s) 25, 941, 1040
NdeII GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
NlaIII CATG 5 cut(s) 29, 628, 945, 1044, 1312
NlaIV GGNNCC 3 cut(s) 151, 999, 1339
NmeAIII GCCGAG 1 cut(s) 1594
NmuCI GTSAC 1 cut(s) 382
NsbI TGCGCA 1 cut(s) 1576
NsiI ATGCAT 1 cut(s) 1377
NspV TTCGAA 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 1341
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 6 cut(s) 418, 540, 834, 1402, 1469, 1554
PflFI GACNNNGTC 1 cut(s) 204
PleI GAGTC 1 cut(s) 1529
PpsI GAGTC 1 cut(s) 1529
Ppu21I YACGTR 1 cut(s) 980
Psp6I CCWGG 2 cut(s) 145, 196
PspGI CCWGG 2 cut(s) 145, 196
PspN4I GGNNCC 3 cut(s) 151, 999, 1339
PspPI GGNCC 1 cut(s) 1338
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 3 cut(s) 94, 997, 1274
PsyI GACNNNGTC 1 cut(s) 204
RsaI GTAC 2 cut(s) 350, 978
RsaNI GTAC 2 cut(s) 349, 977
RseI CAYNNNNRTG 3 cut(s) 172, 438, 629
SalI GTCGAC 1 cut(s) 1532
SaqAI TTAA 2 cut(s) 465, 1145
Sau3AI GATC 6 cut(s) 65, 94, 363, 693, 997, 1274
Sau96I GGNCC 1 cut(s) 1338
SchI GAGTC 1 cut(s) 1529
ScrFI CCNGG 2 cut(s) 147, 198
SduI GDGCHC 2 cut(s) 326, 867
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 5 cut(s) 892, 1045, 1073, 1303, 1492
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 1 cut(s) 1338
SmiMI CAYNNNNRTG 3 cut(s) 172, 438, 629
SmlI CTYRAG 1 cut(s) 1096
SmoI CTYRAG 1 cut(s) 1096
SnaBI TACGTA 1 cut(s) 980
SsiI CCGC 7 cut(s) 182, 185, 858, 995, 1009, 1157, 1443
SspI AATATT 3 cut(s) 454, 897, 1165
SspMI CTAG 5 cut(s) 63, 239, 290, 672, 1624
StyD4I CCNGG 2 cut(s) 145, 196
StyI CCWWGG 4 cut(s) 25, 941, 1040, 1183
TaaI ACNGT 4 cut(s) 102, 174, 1085, 1226
TaiI ACGT 4 cut(s) 261, 317, 796, 982
TaqI TCGA 6 cut(s) 252, 362, 368, 924, 1344, 1533
TauI GCSGC 2 cut(s) 185, 188
TfiI GAWTC 6 cut(s) 418, 540, 834, 1402, 1469, 1554
Tru1I TTAA 2 cut(s) 465, 1145
Tru9I TTAA 2 cut(s) 465, 1145
TscAI CASTG 5 cut(s) 568, 967, 1090, 1222, 1231
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 6 cut(s) 50, 613, 1118, 1136, 1257, 1578
TspGWI ACGGA 2 cut(s) 142, 1187
TspRI CASTG 5 cut(s) 568, 967, 1090, 1222, 1231
Tth111I GACNNNGTC 1 cut(s) 204
VneI GTGCAC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 1338
XapI RAATTY 3 cut(s) 331, 496, 658
XmiI GTMKAC 3 cut(s) 107, 589, 1533
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 5 cut(s) 63, 239, 290, 672, 1624
Zsp2I ATGCAT 1 cut(s) 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.