Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008918

Physical Location & Seq

Genomic Coordinates Forward (+)

17402852 .. 17406369

Gene Structure 3518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0180900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGTACTCGAAATTTGGTCGTATTGGATATGCACGCAAGGTGTTTGATGATATTCCTGAGAGAAATGAAGCTTCTTGGAACACGATGATGTCGAGCTATGTGAGAGTGGGGTTGTATTCTGACTCGGTTAGGTTCTTTTGTGAGATGGTTGGCTGTGGCGTTAGGCCGAGTGGGTTTGTCATTGCTAGTTTGGTTACTGCGTGTGATAAGTCTGGTTCTATGTTTTGTGAAGGAATGCAAGTCCATGGCTTTGTGGTGAAACTTGGGTTGTTGTGTGATGTGTTTGTGGGAACTTCTGTTTTGCATTTGTATGGTACGTATGGTGTTGTTTCGAATGCTCGAAAGGTGTTTGAGGAGATGCCGGAGAAGAATGTGGTTACTTGGACTTCTTTGATTGTTGGGTATTCTAATGGTGGAGATTTGGGAGAGGTAATGAGTATATATAAGCGTATGAGGCGTGAAGGAGTGTGTTGCAATGATAATACTTTAGCCATAGTGTTTAGTACTTGTGGGGCGCTGGGGGATGAGTTATTGGGTCAACAAGTTCTTGGAGATGTTGTGAAACTTGGGTTGCAGACTAGTGTTTCTGTGGCAAATTCGCTTATATCCATGTATGGTAGCTTTGGTAATGTGGGTGAGGCGTGCTATGTATTCGATCACATGGATGAAAGGGACACAATCTCATGGAATTCTATTATTTCTGCTAATGTGCAAAATGGGCTTTGTGAAGAATCATTACGGTATTTTCATCGTATGCGGCATGTTAATAAAGAAGTGAATTCTATAACAGTTTCAACGTTGTTGGGAGTCTGCGGTTCCACAGATAAACTGAAGTGGGGCAGGGGAATTCATGGACTAGTGGTGAAACTGGGGATGGAATCAAATGTTTGTGTTGGCAATACTCTTTTAAGTATGTATTCTGAGGCTGGAAAATCTGAAGATGCTGAGTTAGTTTTCAAAAGAATGATAGAGAAGGATATAATCTCATGGAACTCCATGTTAGCATGCTATGTTCAGAATGAGGAGTCCCAAAATGCCCTCAAACATTTTGCTGAAATGCTTCGGACAAGAAAAGCAATAAATTATGTGACTTTAACAAGTGCATTATCTGCCTGTTCAAATCCAGAATTTGTAGTTGAAGGAAAGATTCTTCATGCTCTAGCAGTCATTGCAGGCCTACAAGACAATCTGATAGTAGGAAATGCATTAGTTACCATGTATGGAAAGCTTAGTAAGACGCTTGAAGCAGCGAAGGTGTTGCAAACAATGCCCAAGCGAGATGAAGTTACTTGGAATTCTCTCATCGGTAGTTATGCTGAAAACAAAGAACCAGATGAGGTAATTACAGCTTTTAAACTCATGAGAAAAGAAGGAACTGCAGCAAACTACATTACAATAATTAATGTTCTTGGTGCTTTCCTGATTCCTAGTGATCTACTAAAACATGGGATGCCCATCCATGCATACATAGTTCTAACAGGATTTGAATCAGAAAAGTATGTGCAGAGTTCCCTTATTACGATGTATGCTAAGTGTGGTGATTTGAACTCAAGTAATTCCATATTTAGTGGACTAACTGTCAAGAACTCCATTGCATGGAATGCAATCATTGCTGCAAATGCTAACCATGGCCTTGAGGAAGCTTTGAAACTTGCTTTGATGATGAGAAGAGCTGGAGTGGACTTTGATCAGTTCAGCTTATCTATCGCACTTTCTGTTAGTGCAGACCTGGCTATGTTGGTAGAAGGTCAGCAGCTTCATGGCCTGGTAGTTAAGCTTGGTTTTGACACAGACCATTATATTACAAATGCTGCGATGGATATGTATGGAAAATGCGGGGAGATGGAAGATGTTCTGAAGATGCTTCCATCACCAACCATTAGGTCACGATTATCATGGAACATCATGATATCATCGTTTGCCAAACATGGGTGTTTCGAGAAGGCTAGGGAGAGCTTTCATGAAATGGTAAGTCTGGATGTGAAACCTGACCATGTCACCTTTGTCTCACTTCTCTCTGCGTGCAGTCATGGGGGTCTCGTGGATGATGGTCTTGCATACTATAATGCAATGACTACAGAGTTCGGTGTCCCACCAGCAATAGAACATTGTGTGTGCGTAATTGATCTTCTTGGGCGATCAGGAAGGCTTTCTGAGGCTGAAAACTTTATTAAAGAAATGCCAGTCCCCCCAAATGACCTTGTGTGGCGGAGCTTGTTGGCTGCATGTAAAATTCATCGCAATTTGGAATTAGGGAGGAAAGCAGCAGACCATCTTCTTGAGTTAGATCCATCAGACGATTCAGCTTATGTTCTTTTCTCAAATGTTTGTGCAAGTACTGGAAGATGGGAGGAAGTAGAGAATGTAAGGAGGCAAATGGGTTCGAGAAACATAACAAAAAAGCCAGCATGTAGTTGGGTCAAGTTGAAAAGTGAGGTGAGTAAATTCGGGATGGGAGAAAAGTCTCACCCACAGACACAGCAGATTTATGCCAAGTTGGGAGAGCTTATGAAGATGATTAGAGAAGCAGGCTATGTTCCTGATACAAGCTACTCCCTGCAAGATACCGATGAAGAACAGAAGGAGCAAAATCTTTGGAACCACAGTGAGAGAATTGCCCTTGCTTTTGGGTTGATCAATACTCCAGAAGGTTCACCTGTTAAGGTTTTCAAGAATCTTCGAGTCTGTGGTGATTGCCATTCTGTGTACAAGCATGTTAGCGCAGTAGTTGGGCGGAAAATCATATTGAGGGATCCATACCGGTTTCACCATTTCAGTGATGGCAAGTGTTCTTGTTCTGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

936

Amino Acids

103.62

Weight (kDa)

6.2

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	25 - 54	4.9e-06	PPR repeat
PPR_2	PF13041	123 - 170	6.4e-08	PPR repeat family
PPR	PF01535	126 - 156	1e-06	PPR repeat
PPR	PF01535	429 - 458	1e-05	PPR repeat
PPR	PF01535	632 - 660	6.8e-07	PPR repeat
PPR_2	PF13041	632 - 676	2.3e-10	PPR repeat family
E_motif	PF20431	746 - 807	5.3e-22	E motif
DYW_deaminase	PF14432	844 - 936	1.9e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50700 AT1G50700 AT1G50700 AT3G20410 AT3G20410
fragaria_vesca	FvH4_3g22730 FvH4_3g22730
malus_domestica	MD03G1200500.v1.1 MD11G1217500.v1.1
prunus_persica	Prupe.4G213800_v2.0.a1 Prupe.4G213800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039651
rosa_laevigata	RLG00000033934
rosa_multiflora	Rmu_ssc0000400.1_g000007 Rmu_ssc0000400.1_g000008
rosa_roxburghii	Rroxscaffold_1G00041560
rosa_rugosa	Rorug05G0180900
rosa_samantha	Rh5AG267700 Rh5BG272000 Rh5CG304600 Rh5DG279700
rosa_wichuraiana	Rw5G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1596
AciI	CCGC	5 cut(s)	757, 813, 1836, 2209, 2734
AclI	AACGTT	1 cut(s)	797
AclWI	GGATC	3 cut(s)	2282, 2747, 2760
AcsI	RAATTY	9 cut(s)	11, 595, 688, 778, 846, 1127, 1294, 2232, 2444
AcuI	CTGAAG	3 cut(s)	851, 957, 1877
AfaI	GTAC	5 cut(s)	5, 316, 505, 2338, 2708
AfiI	CCNNNNNNNGG	2 cut(s)	1596, 1929
AgeI	ACCGGT	1 cut(s)	2760
AhdI	GACNNNNNGTC	1 cut(s)	1577
AhlI	ACTAGT	2 cut(s)	578, 856
AjnI	CCWGG	2 cut(s)	1728, 1764
Alw26I	GTCTC	3 cut(s)	2011, 2042, 2469
AlwI	GGATC	3 cut(s)	2282, 2747, 2760
AoxI	GGCC	4 cut(s)	164, 1174, 1630, 1762
ApeKI	GCWGC	7 cut(s)	1247, 1379, 1613, 1753, 1811, 2222, 2264
ApoI	RAATTY	9 cut(s)	11, 595, 688, 778, 846, 1127, 1294, 2232, 2444
AseI	ATTAAT	1 cut(s)	1401
AsiGI	ACCGGT	1 cut(s)	2760
Asp700I	GAANNNNTTC	3 cut(s)	1059, 1851, 2149
AspLEI	GCGC	2 cut(s)	517, 2723
AsuII	TTCGAA	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	2752
BarI	GAAGNNNNNNTAC	4 cut(s)	720, 752, 2112, 2144
BauI	CACGAG	1 cut(s)	2039
BbvI	GCAGC	7 cut(s)	1259, 1391, 1600, 1765, 1798, 2209, 2276
BcgI	CGANNNNNNTGC	2 cut(s)	1240, 1274
BciT130I	CCWGG	2 cut(s)	1730, 1766
BclI	TGATCA	2 cut(s)	1687, 2634
BcoDI	GTCTC	3 cut(s)	2011, 2042, 2469
BcuI	ACTAGT	2 cut(s)	578, 856
BfaI	CTAG	6 cut(s)	186, 579, 857, 1160, 1428, 1947
BfmI	CTRYAG	2 cut(s)	1377, 2076
BfoI	RGCGCY	1 cut(s)	518
BisI	GCNGC	8 cut(s)	758, 1248, 1380, 1614, 1754, 1812, 2223, 2265
BlsI	GCNGC	8 cut(s)	759, 1249, 1381, 1615, 1755, 1813, 2224, 2266
BmcAI	AGTACT	2 cut(s)	505, 2338
Bme1390I	CCNGG	2 cut(s)	1730, 1766
BmeRI	GACNNNNNGTC	1 cut(s)	1577
BmiI	GGNNCC	3 cut(s)	817, 2600, 2754
BmrFI	CCNGG	2 cut(s)	1730, 1766
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	4 cut(s)	348, 931, 1440, 1851
BmuI	ACTGGG	1 cut(s)	878
BpmI	CTGGAG	2 cut(s)	1695, 2628
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	3 cut(s)	1534, 1655, 2300
BsaAI	YACGTR	1 cut(s)	318
BsaBI	GATNNNNATC	2 cut(s)	1454, 1486
BsaI	GGTCTC	1 cut(s)	2042
BsaJI	CCNNGG	2 cut(s)	244, 1627
BsaWI	WCCGGW	1 cut(s)	2760
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	1596, 1929
Bse118I	RCCGGY	1 cut(s)	2760
Bse1I	ACTGG	3 cut(s)	873, 2183, 2344
Bse3DI	GCAATG	6 cut(s)	180, 481, 1167, 1590, 1608, 2076
Bse8I	GATNNNNATC	2 cut(s)	1454, 1486
BseBI	CCWGG	2 cut(s)	1730, 1766
BseDI	CCNNGG	2 cut(s)	244, 1627
BseGI	GGATG	8 cut(s)	529, 670, 879, 1455, 1455, 1984, 2050, 2457
BseJI	GATNNNNATC	2 cut(s)	1454, 1486
BseLI	CCNNNNNNNGG	2 cut(s)	1596, 1929
BseMI	GCAATG	6 cut(s)	180, 481, 1167, 1590, 1608, 2076
BseMII	CTCAG	4 cut(s)	48, 912, 936, 2145
BseNI	ACTGG	3 cut(s)	873, 2183, 2344
BseRI	GAGGAG	2 cut(s)	368, 1037
BseXI	GCAGC	7 cut(s)	1259, 1391, 1600, 1765, 1798, 2209, 2276
BseYI	CCCAGC	1 cut(s)	517
BsgI	GTGCAG	3 cut(s)	1523, 1743, 2044
BshFI	GGCC	4 cut(s)	166, 1176, 1632, 1764
BshTI	ACCGGT	1 cut(s)	2760
BsiSI	CCGG	2 cut(s)	362, 2761
BslFI	GGGAC	4 cut(s)	686, 1012, 2075, 2171
BslI	CCNNNNNNNGG	2 cut(s)	1596, 1929
BsmAI	GTCTC	3 cut(s)	2011, 2042, 2469
BsmFI	GGGAC	4 cut(s)	686, 1012, 2075, 2171
BsmI	GAATGC	3 cut(s)	240, 340, 1606
BsnI	GGCC	4 cut(s)	166, 1176, 1632, 1764
Bso31I	GGTCTC	1 cut(s)	2042
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1407I	TGTACA	1 cut(s)	2706
Bsp143I	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
Bsp19I	CCATGG	2 cut(s)	244, 1627
BspACI	CCGC	5 cut(s)	757, 813, 1836, 2209, 2734
BspANI	GGCC	4 cut(s)	166, 1176, 1632, 1764
BspCNI	CTCAG	4 cut(s)	49, 913, 937, 2146
BspHI	TCATGA	3 cut(s)	1359, 1905, 1960
BspLI	GGNNCC	3 cut(s)	817, 2600, 2754
BspMAI	CTGCAG	1 cut(s)	1381
BspPI	GGATC	3 cut(s)	2282, 2747, 2760
BspQI	GCTCTTC	1 cut(s)	1663
BspT104I	TTCGAA	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	2042
BsrDI	GCAATG	6 cut(s)	180, 481, 1167, 1590, 1608, 2076
BsrFI	RCCGGY	1 cut(s)	2760
BsrGI	TGTACA	1 cut(s)	2706
BsrI	ACTGG	3 cut(s)	873, 2183, 2344
BssAI	RCCGGY	1 cut(s)	2760
BssECI	CCNNGG	2 cut(s)	244, 1627
BssMI	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
BssSI	CACGAG	1 cut(s)	2039
BssT1I	CCWWGG	2 cut(s)	244, 1627
Bst2BI	CACGAG	1 cut(s)	2039
Bst2UI	CCWGG	2 cut(s)	1730, 1766
Bst4CI	ACNGT	4 cut(s)	741, 790, 1579, 2606
Bst6I	CTCTTC	1 cut(s)	1663
BstAPI	GCANNNNNTGC	5 cut(s)	1109, 1169, 1267, 1601, 1610
BstAUI	TGTACA	1 cut(s)	2706
BstBAI	YACGTR	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	7 cut(s)	34, 643, 1006, 1174, 2023, 2406, 2530
BstDEI	CTNAG	6 cut(s)	57, 921, 945, 1229, 1530, 2154
BstDSI	CCRYGG	2 cut(s)	244, 1627
BstF5I	GGATG	8 cut(s)	529, 670, 879, 1455, 1455, 1984, 2050, 2457
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	517, 2723
BstKTI	GATC	8 cut(s)	658, 1435, 1690, 2128, 2141, 2290, 2637, 2755
BstMAI	GTCTC	3 cut(s)	2011, 2042, 2469
BstMBI	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
BstMWI	GCNNNNNNNGC	9 cut(s)	454, 718, 1109, 1169, 1267, 1601, 1610, 1619, 1730
BstNI	CCWGG	2 cut(s)	1730, 1766
BstNSI	RCATGY	5 cut(s)	764, 1008, 2229, 2412, 2717
BstSCI	CCNGG	2 cut(s)	1728, 1764
BstSFI	CTRYAG	2 cut(s)	1377, 2076
BstSNI	TACGTA	1 cut(s)	318
BstV1I	GCAGC	7 cut(s)	1259, 1391, 1600, 1765, 1798, 2209, 2276
BstX2I	RGATCY	2 cut(s)	2287, 2752
BstYI	RGATCY	2 cut(s)	2287, 2752
BsuRI	GGCC	4 cut(s)	166, 1176, 1632, 1764
BtgI	CCRYGG	2 cut(s)	244, 1627
BtgZI	GCGATG	2 cut(s)	1829, 2222
BtsCI	GGATG	8 cut(s)	529, 670, 879, 1455, 1455, 1984, 2050, 2457
BtsIMutI	CAGTG	2 cut(s)	2611, 2782
Cac8I	GCNNGC	7 cut(s)	34, 643, 1006, 1174, 2023, 2406, 2530
CciI	TCATGA	3 cut(s)	1359, 1905, 1960
CfoI	GCGC	2 cut(s)	517, 2723
Cfr10I	RCCGGY	1 cut(s)	2760
CseI	GACGC	1 cut(s)	1246
Csp6I	GTAC	5 cut(s)	4, 315, 504, 2337, 2707
CspAI	ACCGGT	1 cut(s)	2760
CviQI	GTAC	5 cut(s)	4, 315, 504, 2337, 2707
DdeI	CTNAG	6 cut(s)	57, 921, 945, 1229, 1530, 2154
DpnI	GATC	8 cut(s)	657, 1434, 1689, 2127, 2140, 2289, 2636, 2754
DpnII	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
DraI	TTTAAA	1 cut(s)	1354
DriI	GACNNNNNGTC	1 cut(s)	1577
Eam1104I	CTCTTC	1 cut(s)	1663
Eam1105I	GACNNNNNGTC	1 cut(s)	1577
EarI	CTCTTC	1 cut(s)	1663
EciI	GGCGGA	2 cut(s)	2224, 2749
Eco105I	TACGTA	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	244, 1627
Eco147I	AGGCCT	1 cut(s)	1176
Eco31I	GGTCTC	1 cut(s)	2042
Eco32I	GATATC	1 cut(s)	1911
Eco57I	CTGAAG	3 cut(s)	851, 957, 1877
EcoRI	GAATTC	4 cut(s)	688, 778, 846, 1294
EcoRII	CCWGG	2 cut(s)	1728, 1764
EcoRV	GATATC	1 cut(s)	1911
EcoT14I	CCWWGG	2 cut(s)	244, 1627
EcoT22I	ATGCAT	2 cut(s)	1207, 1465
ErhI	CCWWGG	2 cut(s)	244, 1627
FaqI	GGGAC	4 cut(s)	686, 1012, 2075, 2171
FauI	CCCGC	1 cut(s)	1829
FbaI	TGATCA	2 cut(s)	1687, 2634
Fnu4HI	GCNGC	8 cut(s)	758, 1248, 1380, 1614, 1754, 1812, 2223, 2265
FokI	GGATG	8 cut(s)	536, 677, 886, 1442, 1462, 1991, 2057, 2464
Fsp4HI	GCNGC	8 cut(s)	758, 1248, 1380, 1614, 1754, 1812, 2223, 2265
FspBI	CTAG	6 cut(s)	186, 579, 857, 1160, 1428, 1947
GlaI	GCGC	2 cut(s)	516, 2722
GluI	GCNGC	8 cut(s)	758, 1248, 1380, 1614, 1754, 1812, 2223, 2265
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	2 cut(s)	1695, 2628
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	4 cut(s)	166, 1176, 1632, 1764
HapII	CCGG	2 cut(s)	362, 2761
HgaI	GACGC	1 cut(s)	1246
HhaI	GCGC	2 cut(s)	517, 2723
Hin6I	GCGC	2 cut(s)	515, 2721
HinP1I	GCGC	2 cut(s)	515, 2721
HincII	GTYRAC	1 cut(s)	539
HindII	GTYRAC	1 cut(s)	539
HindIII	AAGCTT	4 cut(s)	69, 1226, 1641, 1775
HpaII	CCGG	2 cut(s)	362, 2761
Hpy166II	GTNNAC	5 cut(s)	539, 1571, 1681, 2654, 2707
Hpy8I	GTNNAC	5 cut(s)	539, 1571, 1681, 2654, 2707
HpyCH4III	ACNGT	4 cut(s)	741, 790, 1579, 2606
HpyCH4IV	ACGT	2 cut(s)	317, 797
HpyF10VI	GCNNNNNNNGC	9 cut(s)	454, 718, 1109, 1169, 1267, 1601, 1610, 1619, 1730
HpyF3I	CTNAG	6 cut(s)	57, 921, 945, 1229, 1530, 2154
HpySE526I	ACGT	2 cut(s)	317, 797
HspAI	GCGC	2 cut(s)	515, 2721
Ksp22I	TGATCA	2 cut(s)	1687, 2634
Kzo9I	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
LguI	GCTCTTC	1 cut(s)	1663
LmnI	GCTCC	2 cut(s)	2211, 2584
Lsp1109I	GCAGC	7 cut(s)	1259, 1391, 1600, 1765, 1798, 2209, 2276
LweI	GCATC	4 cut(s)	348, 931, 1440, 1851
MaeI	CTAG	6 cut(s)	186, 579, 857, 1160, 1428, 1947
MaeII	ACGT	2 cut(s)	317, 797
MaeIII	GTNAC	7 cut(s)	193, 376, 1087, 1210, 1285, 1884, 1996
MalI	GATC	8 cut(s)	657, 1434, 1689, 2127, 2140, 2289, 2636, 2754
MboI	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
MflI	RGATCY	2 cut(s)	2287, 2752
MlyI	GAGTC	4 cut(s)	116, 816, 1034, 2691
Mph1103I	ATGCAT	2 cut(s)	1207, 1465
MroXI	GAANNNNTTC	3 cut(s)	1059, 1851, 2149
MseI	TTAA	8 cut(s)	765, 908, 1094, 1353, 1401, 1773, 2172, 2661
MslI	CAYNNNNRTG	4 cut(s)	86, 309, 663, 2775
MspI	CCGG	2 cut(s)	362, 2761
MspR9I	CCNGG	2 cut(s)	1730, 1766
Mva1269I	GAATGC	3 cut(s)	240, 340, 1606
MvaI	CCWGG	2 cut(s)	1730, 1766
MwoI	GCNNNNNNNGC	9 cut(s)	454, 718, 1109, 1169, 1267, 1601, 1610, 1619, 1730
NcoI	CCATGG	2 cut(s)	244, 1627
NdeII	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
NlaIV	GGNNCC	3 cut(s)	817, 2600, 2754
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	3 cut(s)	1087, 1884, 1996
NsiI	ATGCAT	2 cut(s)	1207, 1465
NspI	RCATGY	5 cut(s)	764, 1008, 2229, 2412, 2717
NspV	TTCGAA	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	1008
PagI	TCATGA	3 cut(s)	1359, 1905, 1960
PceI	AGGCCT	1 cut(s)	1176
PciSI	GCTCTTC	1 cut(s)	1663
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	3 cut(s)	240, 340, 1606
PdmI	GAANNNNTTC	3 cut(s)	1059, 1851, 2149
PfeI	GAWTC	7 cut(s)	731, 878, 1147, 1423, 1487, 2300, 2674
PflFI	GACNNNGTC	1 cut(s)	1994
PflMI	CCANNNNNTGG	1 cut(s)	1596
PinAI	ACCGGT	1 cut(s)	2760
PkrI	GCNGC	8 cut(s)	759, 1249, 1381, 1615, 1755, 1813, 2224, 2266
PleI	GAGTC	4 cut(s)	116, 815, 1033, 2690
PpsI	GAGTC	4 cut(s)	116, 815, 1033, 2690
Ppu21I	YACGTR	1 cut(s)	318
PshBI	ATTAAT	1 cut(s)	1401
Psp1406I	AACGTT	1 cut(s)	797
Psp6I	CCWGG	2 cut(s)	1728, 1764
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	2 cut(s)	1728, 1764
PspN4I	GGNNCC	3 cut(s)	817, 2600, 2754
PstI	CTGCAG	1 cut(s)	1381
PsuI	RGATCY	2 cut(s)	2287, 2752
PsyI	GACNNNGTC	1 cut(s)	1994
RsaI	GTAC	5 cut(s)	5, 316, 505, 2338, 2708
RsaNI	GTAC	5 cut(s)	4, 315, 504, 2337, 2707
RseI	CAYNNNNRTG	4 cut(s)	86, 309, 663, 2775
SapI	GCTCTTC	1 cut(s)	1663
SaqAI	TTAA	8 cut(s)	765, 908, 1094, 1353, 1401, 1773, 2172, 2661
SatI	GCNGC	8 cut(s)	758, 1248, 1380, 1614, 1754, 1812, 2223, 2265
Sau3AI	GATC	8 cut(s)	655, 1432, 1687, 2125, 2138, 2287, 2634, 2752
ScaI	AGTACT	2 cut(s)	505, 2338
SchI	GAGTC	4 cut(s)	116, 816, 1034, 2691
ScrFI	CCNGG	2 cut(s)	1730, 1766
SfaNI	GCATC	4 cut(s)	348, 931, 1440, 1851
SfcI	CTRYAG	2 cut(s)	1377, 2076
SfuI	TTCGAA	1 cut(s)	332
SmiMI	CAYNNNNRTG	4 cut(s)	86, 309, 663, 2775
SmlI	CTYRAG	3 cut(s)	1549, 1634, 2279
SmoI	CTYRAG	3 cut(s)	1549, 1634, 2279
SnaBI	TACGTA	1 cut(s)	318
SpeI	ACTAGT	2 cut(s)	578, 856
SphI	GCATGC	1 cut(s)	1008
SseBI	AGGCCT	1 cut(s)	1176
SsiI	CCGC	5 cut(s)	757, 813, 1836, 2209, 2734
SspMI	CTAG	6 cut(s)	186, 579, 857, 1160, 1428, 1947
StuI	AGGCCT	1 cut(s)	1176
StyD4I	CCNGG	2 cut(s)	1728, 1764
StyI	CCWWGG	2 cut(s)	244, 1627
TaaI	ACNGT	4 cut(s)	741, 790, 1579, 2606
TaiI	ACGT	2 cut(s)	320, 800
TaqI	TCGA	8 cut(s)	8, 92, 332, 340, 654, 1938, 2384, 2680
TatI	WGTACW	4 cut(s)	3, 503, 2336, 2706
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	7 cut(s)	731, 878, 1147, 1423, 1487, 2300, 2674
Tru1I	TTAA	8 cut(s)	765, 908, 1094, 1353, 1401, 1773, 2172, 2661
Tru9I	TTAA	8 cut(s)	765, 908, 1094, 1353, 1401, 1773, 2172, 2661
TscAI	CASTG	2 cut(s)	2611, 2782
TseFI	GTSAC	3 cut(s)	1087, 1884, 1996
TseI	GCWGC	7 cut(s)	1247, 1379, 1613, 1753, 1811, 2222, 2264
Tsp45I	GTSAC	3 cut(s)	1087, 1884, 1996
TspRI	CASTG	2 cut(s)	2611, 2782
Tth111I	GACNNNGTC	1 cut(s)	1994
Van91I	CCANNNNNTGG	1 cut(s)	1596
VspI	ATTAAT	1 cut(s)	1401
XapI	RAATTY	9 cut(s)	11, 595, 688, 778, 846, 1127, 1294, 2232, 2444
XceI	RCATGY	5 cut(s)	764, 1008, 2229, 2412, 2717
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2412, 2777
XmnI	GAANNNNTTC	3 cut(s)	1059, 1851, 2149
XspI	CTAG	6 cut(s)	186, 579, 857, 1160, 1428, 1947
ZrmI	AGTACT	2 cut(s)	505, 2338
Zsp2I	ATGCAT	2 cut(s)	1207, 1465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.