Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0008918

Physical Location & Seq

Genomic Coordinates Reverse (-)

33631 .. 34347

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000400.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgggcaagtgtctaagcaaaagcagagacccagagccacaacataatgggtacagatcaggaggaggagctggacaacattaccaaaaaccccgtgagccagttgttcaccaatccaaggcctctgttcagcaacatcatcaattaccagagaagcgtggcatggcagcccatcaagaaccccaaccagcttggaagccatctgttccagccagaaaccccaaaccagttctcaggccagacacaattctggggaagccatatgaggatgtgaagttgcactacaccttgggaaaagagttgggtagagggcaatttggggtcacatatctttgtactgacatttcaaccgggaggaaatatgcttgcaagtcaatctcaaagaggaagctggtgaccaaaaatgacaaggaggatataaagagggagattcagattatgcagcatttgagtgggcagccaaacattgtggagttcaagggatcttatgaggataagcagtctgtgcatgtttgtatggagctttgtgcaggtggtgagctttttgataggattattgcaaagggtcattacagtgagagagcagcttctgcaatatgcaggtctattgtgagtgttgtgcatatctgtcatttcatgggtgtgatgcatagagacctcaagcctgagaatttcttgctgtctagcaaggatgagaatgcccttattgtattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

238

Amino Acids

26.73

Weight (kDa)

9.32

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50700 AT1G50700 AT1G50700 AT3G20410 AT3G20410
fragaria_vesca	FvH4_3g22730 FvH4_3g22730
malus_domestica	MD03G1200500.v1.1 MD11G1217500.v1.1
prunus_persica	Prupe.4G213800_v2.0.a1 Prupe.4G213800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039651
rosa_laevigata	RLG00000033934
rosa_multiflora	Rmu_ssc0000400.1_g000007 Rmu_ssc0000400.1_g000008
rosa_roxburghii	Rroxscaffold_1G00041560
rosa_rugosa	Rorug05G0180900
rosa_samantha	Rh5AG267700 Rh5BG272000 Rh5CG304600 Rh5DG279700
rosa_wichuraiana	Rw5G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	521
Acc36I	ACCTGC	2 cut(s)	521, 591
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	670
AfaI	GTAC	2 cut(s)	53, 337
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	348, 478
AluBI	AGCT	6 cut(s)	71, 191, 391, 523, 541, 587
AluI	AGCT	6 cut(s)	71, 191, 391, 523, 541, 587
Alw26I	GTCTC	2 cut(s)	21, 648
AlwI	GGATC	1 cut(s)	490
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	120, 236
ApeKI	GCWGC	4 cut(s)	167, 442, 457, 584
ApoI	RAATTY	1 cut(s)	670
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	101, 406, 548
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbvI	GCAGC	4 cut(s)	179, 454, 469, 596
BccI	CCATC	2 cut(s)	180, 208
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	21, 648
BfaI	CTAG	1 cut(s)	684
BfuAI	ACCTGC	2 cut(s)	521, 591
BisI	GCNGC	4 cut(s)	168, 443, 458, 585
BlsI	GCNGC	4 cut(s)	169, 444, 459, 586
Bme1390I	CCNGG	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	352
BsaI	GGTCTC	2 cut(s)	21, 648
BsaJI	CCNNGG	2 cut(s)	117, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	101, 227
BseDI	CCNNGG	2 cut(s)	117, 288
BseGI	GGATG	2 cut(s)	274, 697
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	247, 657
BseNI	ACTGG	2 cut(s)	101, 227
BseRI	GAGGAG	2 cut(s)	78, 81
BseXI	GCAGC	4 cut(s)	179, 454, 469, 596
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	122, 238
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	21, 648
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	122, 238
Bso31I	GGTCTC	2 cut(s)	21, 648
Bsp143I	GATC	2 cut(s)	56, 482
BspANI	GGCC	2 cut(s)	122, 238
BspCNI	CTCAG	2 cut(s)	246, 658
BspMI	ACCTGC	2 cut(s)	521, 591
BspPI	GGATC	1 cut(s)	490
BspTNI	GGTCTC	2 cut(s)	21, 648
BsrI	ACTGG	2 cut(s)	101, 227
BssECI	CCNNGG	2 cut(s)	117, 288
BssMI	GATC	2 cut(s)	56, 482
BssT1I	CCWWGG	2 cut(s)	117, 288
Bst4CI	ACNGT	1 cut(s)	575
BstAPI	GCANNNNNTGC	2 cut(s)	505, 590
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	14, 233, 666
BstEII	GGTNACC	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	274, 697
BstKTI	GATC	2 cut(s)	59, 485
BstMAI	GTCTC	2 cut(s)	21, 648
BstMBI	GATC	2 cut(s)	56, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 590
BstNSI	RCATGY	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	4 cut(s)	179, 454, 469, 596
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	122, 238
BtsCI	GGATG	2 cut(s)	274, 697
BtsIMutI	CAGTG	1 cut(s)	580
BveI	ACCTGC	2 cut(s)	521, 591
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	52, 336
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	3 cut(s)	163, 509, 637
CviQI	GTAC	2 cut(s)	52, 336
DdeI	CTNAG	3 cut(s)	14, 233, 666
DpnI	GATC	2 cut(s)	58, 484
DpnII	GATC	2 cut(s)	56, 482
Eco130I	CCWWGG	2 cut(s)	117, 288
Eco147I	AGGCCT	1 cut(s)	122
Eco31I	GGTCTC	2 cut(s)	21, 648
Eco91I	GGTNACC	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	117, 288
EcoT22I	ATGCAT	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	117, 288
FaeI	CATG	3 cut(s)	166, 512, 640
FatI	CATG	3 cut(s)	162, 508, 636
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	168, 443, 458, 585
FokI	GGATG	2 cut(s)	281, 704
Fsp4HI	GCNGC	4 cut(s)	168, 443, 458, 585
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	4 cut(s)	168, 443, 458, 585
HaeIII	GGCC	2 cut(s)	122, 238
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	3 cut(s)	166, 512, 640
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	3 cut(s)	101, 406, 548
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	2 cut(s)	60, 176
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 590
HpyF3I	CTNAG	3 cut(s)	14, 233, 666
Hsp92II	CATG	3 cut(s)	166, 512, 640
Kzo9I	GATC	2 cut(s)	56, 482
LmnI	GCTCC	2 cut(s)	68, 520
Lsp1109I	GCAGC	4 cut(s)	179, 454, 469, 596
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	1 cut(s)	684
MaeIII	GTNAC	2 cut(s)	322, 394
MalI	GATC	2 cut(s)	58, 484
MboI	GATC	2 cut(s)	56, 482
MflI	RGATCY	1 cut(s)	482
MluCI	AATT	4 cut(s)	143, 246, 314, 670
Mph1103I	ATGCAT	1 cut(s)	651
MslI	CAYNNNNRTG	3 cut(s)	450, 573, 641
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	505, 590
NciI	CCSGG	1 cut(s)	352
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	56, 482
NlaIII	CATG	3 cut(s)	166, 512, 640
NmuCI	GTSAC	2 cut(s)	322, 394
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	169, 444, 459, 586
PspEI	GGTNACC	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	482
RsaI	GTAC	2 cut(s)	53, 337
RsaNI	GTAC	2 cut(s)	52, 336
RseI	CAYNNNNRTG	3 cut(s)	450, 573, 641
SatI	GCNGC	4 cut(s)	168, 443, 458, 585
Sau3AI	GATC	2 cut(s)	56, 482
ScrFI	CCNGG	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	636
SmiMI	CAYNNNNRTG	3 cut(s)	450, 573, 641
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	4 cut(s)	143, 246, 314, 670
SseBI	AGGCCT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	2 cut(s)	117, 288
TaaI	ACNGT	1 cut(s)	575
TasI	AATT	4 cut(s)	143, 246, 314, 670
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	430
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	322, 394
TseI	GCWGC	4 cut(s)	167, 442, 457, 584
Tsp45I	GTSAC	2 cut(s)	322, 394
TspDTI	ATGAA	1 cut(s)	625
TspRI	CASTG	1 cut(s)	580
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	512
XspI	CTAG	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.