Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007819

Physical Location & Seq

Genomic Coordinates Forward (+)

18935301 .. 18937665

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGTGGCAGTCAGATTCTACGCTGTAGAGATGTCGCTACCATGTTTATGTCCATGCCCATCATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATTCAATCTTCTTAACACAACAAGCAGGAGACTAGGTTTGTCTAGAAACTGTAGAACTCTGCGAATCAGTTGTTCATCTTCATCTACTGTCACTGACCAAACTCAACAATCGTCTTTTAATGATGCTGAGTTGAAACTCATTGACGCTTTGATCGGAATTCAAGGCCGTGGCAAATCTGCTTCTCCTAAACAGCTCAATGATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCTACAGATTCTGACCTAATCGAAGGTCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATCCAAAGAACATTTACAGGAGTTGATGTGTTCACTGTGTTTCAAGATGTATACTTGAAGGCAACAAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGATTTCATTGGAGAGCTGAAAGTTGAGGCAGTTGCGTCGATCAAAGATGGGAAACGAGTTTTATTCCGTTTTGATAGAGCCGCTTTTGATTTGAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGACTTCTTGGTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGATTTCTAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACCGTGCCTAGGCAGAAATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTGCGTCTAATTCTAATTCCGCGGAAGATAATTATGAGCTTTTAGAAGGAAGTTGGCAAATGATTTGGAGTTCACAGATGTATACAGATAGTTGGATTGAAAATGCAGCAAATGGTCTTATGGGAAGACAGATCATTGAGAAGGATGGGAGGATAAAGTTTGAAGTTAACATCATTCCGGCATTTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACATATGACTTGAAGATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAATATCGAGCTAAAAATTCTGTACACAGATGAGAAGATGAGGATAAGCCGAGGATTCGATAACATTATCTTTGTGCACATCCGAGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

409

Amino Acids

45.76

Weight (kDa)

8.1

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	73 - 252	4.3e-48	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51110
fragaria_vesca	FvH4_3g44350 FvH4_3g44350 FvH4_3g44350 FvH4_3g44350
malus_domestica	MD11G1015800.v1.1
prunus_persica	Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1
pyrus_communis	pycom11g01100
rosa_chinensis	RchiOBHm_Chr5g0080731
rosa_laevigata	RLG00000036889
rosa_multiflora	Rmu_sc0009018.1_g000001 Rmu_sc0011427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002700
rosa_rugosa	Rorug05G0471900
rosa_samantha	Rh5AG525200 Rh5BG547300 Rh5CG570700 Rh5CG571100 Rh5DG557400
rosa_wichuraiana	Rw5G048690 Rw5G049260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	468, 920
AccII	CGCG	1 cut(s)	860
AciI	CCGC	4 cut(s)	600, 858, 860, 1104
AclI	AACGTT	1 cut(s)	746
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	5 cut(s)	252, 512, 1043, 1152, 1224
AcuI	CTGAAG	2 cut(s)	690, 740
AfaI	GTAC	2 cut(s)	1066, 1160
AfiI	CCNNNNNNNGG	1 cut(s)	774
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	397, 429
AluBI	AGCT	5 cut(s)	289, 535, 818, 877, 1147
AluI	AGCT	5 cut(s)	289, 535, 818, 877, 1147
Alw21I	GWGCWC	1 cut(s)	1215
Alw26I	GTCTC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	1211
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	259
ApaLI	GTGCAC	1 cut(s)	1211
ApeKI	GCWGC	2 cut(s)	944, 1091
ApoI	RAATTY	5 cut(s)	252, 512, 1043, 1152, 1224
Asp700I	GAANNNNTTC	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	382, 674
AvrII	CCTAGG	1 cut(s)	773
AxyI	CCTNAGG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	1215
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	970
Bbv12I	GWGCWC	1 cut(s)	1215
BbvCI	CCTCAGC	1 cut(s)	819
BbvI	GCAGC	2 cut(s)	956, 1103
BccI	CCATC	4 cut(s)	67, 560, 977, 1075
BceAI	ACGGC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	5 cut(s)	128, 138, 683, 726, 774
BfmI	CTRYAG	3 cut(s)	24, 145, 348
BisI	GCNGC	3 cut(s)	600, 945, 1092
BlnI	CCTAGG	1 cut(s)	773
BlsI	GCNGC	3 cut(s)	601, 946, 1093
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	208, 419
BpiI	GAAGAC	1 cut(s)	970
Bpu10I	CCTNAGC	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	786
Bsa29I	ATCGAT	1 cut(s)	828
BsaJI	CCNNGG	4 cut(s)	262, 773, 858, 1186
BsaWI	WCCGGW	1 cut(s)	1120
BsaXI	ACNNNNNCTCC	6 cut(s)	115, 145, 397, 427, 429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	641
Bse21I	CCTNAGG	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	4 cut(s)	262, 773, 858, 1186
BseGI	GGATG	2 cut(s)	988, 1215
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	213, 810
BseNI	ACTGG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	1215
BseXI	GCAGC	2 cut(s)	956, 1103
Bsh1236I	CGCG	1 cut(s)	860
Bsh1285I	CGRYCG	1 cut(s)	1125
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	1 cut(s)	1125
BsiHKAI	GWGCWC	1 cut(s)	1215
BsiSI	CCGG	2 cut(s)	1016, 1121
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp1407I	TGTACA	1 cut(s)	1158
Bsp143I	GATC	4 cut(s)	246, 487, 558, 969
BspACI	CCGC	4 cut(s)	600, 858, 860, 1104
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	214, 811
BspDI	ATCGAT	1 cut(s)	828
BspFNI	CGCG	1 cut(s)	860
BspPI	GGATC	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	1158
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	4 cut(s)	262, 773, 858, 1186
BssMI	GATC	4 cut(s)	246, 487, 558, 969
BssNAI	GTATAC	2 cut(s)	469, 921
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	773
Bst1107I	GTATAC	2 cut(s)	469, 921
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	4 cut(s)	146, 184, 454, 769
BstAUI	TGTACA	1 cut(s)	1158
BstDEI	CTNAG	3 cut(s)	222, 716, 819
BstDSI	CCRYGG	2 cut(s)	262, 858
BstEII	GGTNACC	1 cut(s)	710
BstF5I	GGATG	2 cut(s)	988, 1215
BstFNI	CGCG	1 cut(s)	860
BstKTI	GATC	4 cut(s)	249, 490, 561, 972
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	4 cut(s)	246, 487, 558, 969
BstMCI	CGRYCG	1 cut(s)	1125
BstNI	CCWGG	1 cut(s)	402
BstPI	GGTNACC	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	3 cut(s)	24, 145, 348
BstSLI	GKGCMC	1 cut(s)	1215
BstUI	CGCG	1 cut(s)	860
BstV1I	GCAGC	2 cut(s)	956, 1103
BstV2I	GAAGAC	1 cut(s)	970
BstZ17I	GTATAC	2 cut(s)	469, 921
Bsu15I	ATCGAT	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	2 cut(s)	262, 858
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	988, 1215
BtsIMutI	CAGTG	2 cut(s)	186, 450
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr42I	CCGCGG	1 cut(s)	861
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	4 cut(s)	248, 543, 831, 1097
Csp6I	GTAC	2 cut(s)	1065, 1159
CviAII	CATG	3 cut(s)	42, 54, 1033
CviQI	GTAC	2 cut(s)	1065, 1159
DdeI	CTNAG	3 cut(s)	222, 716, 819
DpnI	GATC	4 cut(s)	248, 489, 560, 971
DpnII	GATC	4 cut(s)	246, 487, 558, 969
Eco130I	CCWWGG	1 cut(s)	773
Eco32I	GATATC	1 cut(s)	1118
Eco57I	CTGAAG	2 cut(s)	690, 740
Eco81I	CCTNAGG	1 cut(s)	716
Eco91I	GGTNACC	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	1118
EcoT14I	CCWWGG	1 cut(s)	773
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	3 cut(s)	45, 57, 1036
FatI	CATG	3 cut(s)	41, 53, 1032
FauNDI	CATATG	1 cut(s)	1069
FblI	GTMKAC	2 cut(s)	468, 920
Fnu4HI	GCNGC	3 cut(s)	600, 945, 1092
FokI	GGATG	2 cut(s)	995, 1202
Fsp4HI	GCNGC	3 cut(s)	600, 945, 1092
FspBI	CTAG	5 cut(s)	128, 138, 683, 726, 774
GluI	GCNGC	3 cut(s)	600, 945, 1092
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	2 cut(s)	1016, 1121
HgaI	GACGC	4 cut(s)	248, 543, 831, 1097
Hin1II	CATG	3 cut(s)	45, 57, 1036
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HinfI	GANTC	7 cut(s)	15, 96, 159, 302, 353, 1026, 1191
HpaI	GTTAAC	1 cut(s)	1006
HpaII	CCGG	2 cut(s)	1016, 1121
HphI	GGTGA	2 cut(s)	382, 674
Hpy166II	GTNNAC	8 cut(s)	390, 450, 469, 911, 921, 1006, 1161, 1213
Hpy188I	TCNGA	8 cut(s)	14, 93, 251, 358, 520, 759, 1057, 1220
Hpy188III	TCNNGA	4 cut(s)	138, 320, 461, 803
Hpy8I	GTNNAC	8 cut(s)	390, 450, 469, 911, 921, 1006, 1161, 1213
Hpy99I	CGWCG	2 cut(s)	559, 1091
HpyAV	CCTTC	8 cut(s)	317, 326, 362, 469, 629, 714, 878, 973
HpyCH4III	ACNGT	4 cut(s)	146, 184, 454, 769
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	4 cut(s)	410, 944, 1109, 1213
HpyF3I	CTNAG	3 cut(s)	222, 716, 819
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	3 cut(s)	45, 57, 1036
KspAI	GTTAAC	1 cut(s)	1006
KspI	CCGCGG	1 cut(s)	861
Kzo9I	GATC	4 cut(s)	246, 487, 558, 969
LpnPI	CCDG	8 cut(s)	106, 387, 414, 420, 654, 693, 1029, 1134
Lsp1109I	GCAGC	2 cut(s)	956, 1103
LweI	GCATC	2 cut(s)	208, 419
MaeI	CTAG	5 cut(s)	128, 138, 683, 726, 774
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	2 cut(s)	184, 710
MalI	GATC	4 cut(s)	248, 489, 560, 971
MboI	GATC	4 cut(s)	246, 487, 558, 969
MboII	GAAGA	7 cut(s)	95, 165, 746, 875, 975, 1090, 1183
MhlI	GDGCHC	1 cut(s)	1215
MmeI	TCCRAC	1 cut(s)	911
MnlI	CCTC	6 cut(s)	501, 538, 814, 981, 1170, 1181
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	4 cut(s)	108, 213, 510, 1005
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	2 cut(s)	1016, 1121
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	860
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	4 cut(s)	246, 487, 558, 969
NlaIII	CATG	3 cut(s)	45, 57, 1036
NmeAIII	GCCGAG	1 cut(s)	1211
NmuCI	GTSAC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	7 cut(s)	15, 96, 159, 302, 353, 1026, 1191
PkrI	GCNGC	3 cut(s)	601, 946, 1093
Psp1406I	AACGTT	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	400
PspEI	GGTNACC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	1066, 1160
RsaNI	GTAC	2 cut(s)	1065, 1159
RseI	CAYNNNNRTG	1 cut(s)	46
SacII	CCGCGG	1 cut(s)	861
SaqAI	TTAA	4 cut(s)	108, 213, 510, 1005
SatI	GCNGC	3 cut(s)	600, 945, 1092
Sau3AI	GATC	4 cut(s)	246, 487, 558, 969
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	2 cut(s)	208, 419
SfcI	CTRYAG	3 cut(s)	24, 145, 348
Sfr303I	CCGCGG	1 cut(s)	861
SgrBI	CCGCGG	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
SsiI	CCGC	4 cut(s)	600, 858, 860, 1104
SspMI	CTAG	5 cut(s)	128, 138, 683, 726, 774
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	4 cut(s)	146, 184, 454, 769
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	6 cut(s)	366, 557, 828, 1125, 1143, 1194
TatI	WGTACW	2 cut(s)	1064, 1158
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	7 cut(s)	15, 96, 159, 302, 353, 1026, 1191
Tru1I	TTAA	4 cut(s)	108, 213, 510, 1005
Tru9I	TTAA	4 cut(s)	108, 213, 510, 1005
TscAI	CASTG	2 cut(s)	193, 457
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	944, 1091
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	7 cut(s)	69, 159, 165, 514, 681, 1036, 1049
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	2 cut(s)	193, 457
VneI	GTGCAC	1 cut(s)	1211
XapI	RAATTY	5 cut(s)	252, 512, 1043, 1152, 1224
XbaI	TCTAGA	1 cut(s)	137
XmaJI	CCTAGG	1 cut(s)	773
XmiI	GTMKAC	2 cut(s)	468, 920
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	5 cut(s)	128, 138, 683, 726, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.