Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007819

Physical Location & Seq

Genomic Coordinates Reverse (-)

86912764 .. 86915440

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG547300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTCTCAGAGCTCACACAGTGACGTCAGCACCGACCTTCCATTCCCGCCAATTCCAAAGGCCCACATTCCCGCCCACAACTACTCTTCGCTTCAGAAACTCTTCATCAACCCGAGCGAACTCTCTCACCGCCGAACAAGTTTCCTTCACGGAGGAAGAGAACTCCCTCGTCGAAGCCCTCATCGGAATCCAAGGCCGCGGCCGCTCCGCCTTTCCGCAACAACTCAATGAGGTTGAGAGTGCAGTGAAGGTTCTTGAAGCTCTGCAAGGAGTTCCTGAGCCGACAAGCTCGAGTTTGATTGAAGGGAGGTGGCAATTGATGTTCACTACAAGACCTGGAACTGCCTCTCCAATCCAAGTTCCATATCCAGTGCCATTCAGACTTCTTGGAGATGAGGCAAAGGGTTGGTTGGATACCACATATCTGTCCCAATCTGGCAATCTTCGTATCTCAAGAGGAAATAAGGGAACAACATTTGTTCTGCAAAAGAAAGCTGAACCTAGGCAAAGACTATTGTCAATCATCTCGACTGGTACAGGAGTTAAAGAGGCAATCGAGGAGTTTATCTCCTTAAATCAAAACATAGGTGAATTGGAACTCCAAGAGGGAGAATGGCAAATGGTTTGGAGTTCACAGATTGTCAGGGGAAATGAACAAATAAAGTTTGTGGTTGACGCTTTCCTTGGGCTCAAATTCTCCATATCTGGAACCCTCGTCAAATCTGGCTCCCGCACTTATGATGTTACAATGGATGATGCAGCCATCATTGGCGGTGGCTTTGGATATCCCCTAGAAGAGCTAGGGAGCAAGTTTGAACTAGAATTGCTATATAGCGATGACAAGATCAGAATTAGCCGGGGATATAATAAAATACTCTTTGTGCATATACGAACTGATGGTTTGAAACAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

305

Amino Acids

33.91

Weight (kDa)

7.9

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	54 - 120	5.7e-14	PAP_fibrillin
PAP_fibrillin	PF04755	120 - 162	3.6e-12	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51110
fragaria_vesca	FvH4_3g44350 FvH4_3g44350 FvH4_3g44350 FvH4_3g44350
malus_domestica	MD11G1015800.v1.1
prunus_persica	Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1
pyrus_communis	pycom11g01100
rosa_chinensis	RchiOBHm_Chr5g0080731
rosa_laevigata	RLG00000036889
rosa_multiflora	Rmu_sc0009018.1_g000001 Rmu_sc0011427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002700
rosa_rugosa	Rorug05G0471900
rosa_samantha	Rh5AG525200 Rh5BG547300 Rh5CG570700 Rh5CG571100 Rh5DG557400
rosa_wichuraiana	Rw5G048690 Rw5G049260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	207
AccII	CGCG	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	538
AgsI	TTSAA	4 cut(s)	260, 305, 818, 907
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	334, 366
AluBI	AGCT	5 cut(s)	14, 263, 291, 497, 802
AluI	AGCT	5 cut(s)	14, 263, 291, 497, 802
Alw21I	GWGCWC	1 cut(s)	16
Ama87I	CYCGRG	2 cut(s)	114, 292
AoxI	GGCC	3 cut(s)	62, 196, 202
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	103
AspA2I	CCTAGG	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	121, 602
AvaI	CYCGRG	2 cut(s)	114, 292
AvrII	CCTAGG	1 cut(s)	503
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BanII	GRGCYC	2 cut(s)	16, 693
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	773
BccI	CCATC	2 cut(s)	773, 893
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	860
BfaI	CTAG	4 cut(s)	504, 794, 803, 821
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	4 cut(s)	199, 202, 205, 762
BlnI	CCTAGG	1 cut(s)	503
BlsI	GCNGC	4 cut(s)	200, 203, 206, 763
Bme1390I	CCNGG	2 cut(s)	339, 860
BmeT110I	CYCGRG	2 cut(s)	114, 292
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	712, 730
BmrFI	CCNGG	2 cut(s)	339, 860
BmsI	GCATC	1 cut(s)	748
BoxI	GACNNNNGTC	1 cut(s)	517
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	860
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	5 cut(s)	193, 199, 503, 685, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bse1I	ACTGG	2 cut(s)	371, 538
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	5 cut(s)	193, 199, 503, 685, 859
BseGI	GGATG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	22, 270
BseNI	ACTGG	2 cut(s)	371, 538
BseRI	GAGGAG	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	64, 198, 204
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	114, 292
BsiSI	CCGG	1 cut(s)	859
BslFI	GGGAC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	64, 198, 204
BsoBI	CYCGRG	2 cut(s)	114, 292
Bsp1286I	GDGCHC	2 cut(s)	16, 693
Bsp143I	GATC	1 cut(s)	846
BspANI	GGCC	3 cut(s)	64, 198, 204
BspCNI	CTCAG	2 cut(s)	21, 271
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	712, 730
BspQI	GCTCTTC	1 cut(s)	792
BsrBI	CCGCTC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	371, 538
BssECI	CCNNGG	5 cut(s)	193, 199, 503, 685, 859
BssMI	GATC	1 cut(s)	846
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	3 cut(s)	193, 503, 685
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	4 cut(s)	93, 109, 153, 792
BstACI	GRCGYC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	8, 279
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	760
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	849
BstMBI	GATC	1 cut(s)	846
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 204
BstNI	CCWGG	1 cut(s)	339
BstPAI	GACNNNNGTC	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	337, 858
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	773
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	64, 198, 204
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	1 cut(s)	760
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	27, 252, 378
CciNI	GCGGCCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	63
Cfr42I	CCGCGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	537
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	2 cut(s)	8, 279
DpnI	GATC	1 cut(s)	848
DpnII	GATC	1 cut(s)	846
DraIII	CACNNNGTG	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	93, 109, 153, 792
EarI	CTCTTC	4 cut(s)	93, 109, 153, 792
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	193, 503, 685
Eco24I	GRGCYC	2 cut(s)	16, 693
Eco32I	GATATC	1 cut(s)	788
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	114, 292
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	788
EcoT14I	CCWWGG	3 cut(s)	193, 503, 685
EcoT38I	GRGCYC	2 cut(s)	16, 693
ErhI	CCWWGG	3 cut(s)	193, 503, 685
FaqI	GGGAC	1 cut(s)	415
FauI	CCCGC	3 cut(s)	56, 81, 740
Fnu4HI	GCNGC	4 cut(s)	199, 202, 205, 762
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	2 cut(s)	16, 693
Fsp4HI	GCNGC	4 cut(s)	199, 202, 205, 762
FspBI	CTAG	4 cut(s)	504, 794, 803, 821
GluI	GCNGC	4 cut(s)	199, 202, 205, 762
HaeIII	GGCC	3 cut(s)	64, 198, 204
HapII	CCGG	1 cut(s)	859
HgaI	GACGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	1 cut(s)	859
HphI	GGTGA	2 cut(s)	121, 602
Hpy166II	GTNNAC	3 cut(s)	327, 635, 676
Hpy188I	TCNGA	5 cut(s)	11, 98, 188, 383, 851
Hpy188III	TCNNGA	5 cut(s)	257, 278, 456, 529, 708
Hpy8I	GTNNAC	3 cut(s)	327, 635, 676
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	49, 157, 244, 299
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	245, 268, 487, 761, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 204
HpyF3I	CTNAG	2 cut(s)	8, 279
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	846
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	3 cut(s)	212, 734, 807
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	4 cut(s)	504, 794, 803, 821
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	22, 745
MalI	GATC	1 cut(s)	848
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	1 cut(s)	846
MboII	GAAGA	5 cut(s)	80, 96, 170, 437, 809
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	16, 693
MluCI	AATT	6 cut(s)	53, 317, 593, 695, 824, 852
MmeI	TCCRAC	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	546, 575
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	859
MspR9I	CCNGG	2 cut(s)	339, 860
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	11, 204
NciI	CCSGG	1 cut(s)	860
NdeII	GATC	1 cut(s)	846
NlaIV	GGNNCC	2 cut(s)	712, 730
NmuCI	GTSAC	1 cut(s)	22
NotI	GCGGCCGC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	189
PkrI	GCNGC	4 cut(s)	200, 203, 206, 763
PshAI	GACNNNNGTC	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	712, 730
PspPI	GGNCC	1 cut(s)	63
PspXI	VCTCGAGB	1 cut(s)	292
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	2 cut(s)	546, 575
SatI	GCNGC	4 cut(s)	199, 202, 205, 762
Sau3AI	GATC	1 cut(s)	846
Sau96I	GGNCC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	339, 860
SduI	GDGCHC	2 cut(s)	16, 693
SfaNI	GCATC	1 cut(s)	748
Sfr274I	CTCGAG	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	2 cut(s)	292, 454
SmoI	CTYRAG	2 cut(s)	292, 454
Sse9I	AATT	6 cut(s)	53, 317, 593, 695, 824, 852
SspMI	CTAG	4 cut(s)	504, 794, 803, 821
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	337, 858
StyI	CCWWGG	3 cut(s)	193, 503, 685
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	174, 293, 530, 558
TasI	AATT	6 cut(s)	53, 317, 593, 695, 824, 852
TauI	GCSGC	3 cut(s)	201, 204, 207
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	546, 575
Tru9I	TTAA	2 cut(s)	546, 575
TscAI	CASTG	3 cut(s)	27, 252, 378
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	96, 669
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	27, 252, 378
XapI	RAATTY	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	4 cut(s)	504, 794, 803, 821
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.