FvH4_3g44350

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007819
Physical Location & Seq
Reverse (-)
36986596 .. 36989580
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44350.t3

Sequence Viewer

Length: 1182 bp
ATGGCTCTCAGACCTCACACGGTGACGTCAGCACCGACCTTCCATTCCCGCCAATTCCTCCACAGGCCCACATTCCCGCCCAGAACTACTCTTCGCTTCCGAAACTCTTCGTCGACGCGAGCGAACTCCCTCACCGCCGAACAAGTCTCGTTCACGGGGGAAGAGAACTCCCTCGTCGAAGCCCTCATCGGAATCCAAGGCCGCGGCCGCTCCGCCTCTCCTCAGCAACTTAATGAGGTTGAGAGCGCTGTGAAGGTTCTTGAAGCTCTGAAAGGAGTTCCTGAGCCGACAAGCTCGAGTTTGATTGAAGGGAGGTGGCAATTGATGTTTACTACAAGACCTGGAACCGCCTCTCCAATCCAAAGAACATTTGTGGGGGTGGACTTCTTTAGTGTATTTCAAGAGGTTTATCTTCAGACAAAGGATCAGCGTGTGTCGAATATTGTAAAGTTCTCTGATGCAATAGGTGAGCTGAAAGTAGAGGCAGAAGCATCAATCAAAGATGGAAAACGAATACTTTTTCGATTTGACAAAGCGGCATTTTCGTTTAAATTTTTACCATTCAAGGTCCCATATCCAGTGCCATTCAGACTTCTTGGGGATGAGGCAAAGGGTTGGTTGGATACCACATATCTGTCCGAATCTGGCAATCTTCGTATATCGAGAGGAAATAAGGGAACAACATTTGTGCTGCAAAAGAAAGCTGAACCTAGGCAAAGACTATTGTCAGTCATCTCGACTGGTACAGCAGTTAAGGAGGCAATTGAGGAGTTTATCTCCTTAAATCAAAATGTAGGTGAATCAGAACTCCAGGAGGGAGAATGGAAAATGGTTTGGAGCTCACAGGAAGAGACAGATAGTTGGCTTGAGAATGCTGCCAATGGTCTTATGGGCACACAAATTGTCAAGGGAAATGAACAAATAAAGTTTGTGGTTGACGCGTTCCTTGGGCTCAAATTCTCCATATCTGGAACTCTTGTAAAGTCTGGCTCCCGCACTTATGATGTTACAATGGACGATGCAGCCATCATTGGCGGTGGCTTTGGATATCCCCTAGAAGAGCTAGGAAGCAAGTTTGAACTAGAACTGCTATATAGTGATGACAAGATCAGAATCACCCGGGGATATAATAAAATACTCTTTGTGCATGTACGAACTGATGGTTTGAAACAGAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 PRT_C

Protein Analysis

394

Amino Acids

43.87

Weight (kDa)

8.83

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 56 - 231 1.2e-44 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 113
AccII CGCG 3 cut(s) 118, 204, 941
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 2 cut(s) 551, 956
AcuI CTGAAG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 2 cut(s) 745, 1152
AfeI AGCGCT 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 6 cut(s) 263, 308, 401, 565, 1079, 1168
AjnI CCWGG 2 cut(s) 340, 810
AloI GAACNNNNNNTCC 2 cut(s) 337, 369
AluBI AGCT 6 cut(s) 266, 294, 472, 704, 840, 1063
AluI AGCT 6 cut(s) 266, 294, 472, 704, 840, 1063
Alw21I GWGCWC 1 cut(s) 842
Alw26I GTCTC 2 cut(s) 151, 845
AlwI GGATC 1 cut(s) 432
Ama87I CYCGRG 2 cut(s) 295, 1119
Aor51HI AGCGCT 1 cut(s) 247
AoxI GGCC 3 cut(s) 65, 199, 205
ApeKI GCWGC 3 cut(s) 691, 875, 1022
ApoI RAATTY 2 cut(s) 551, 956
Asp700I GAANNNNTTC 1 cut(s) 106
AspA2I CCTAGG 1 cut(s) 710
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 66, 568
AsuC2I CCSGG 2 cut(s) 1120, 1121
AsuHPI GGTGA 5 cut(s) 34, 124, 479, 809, 1108
AvaI CYCGRG 2 cut(s) 295, 1119
AvaII GGWCC 1 cut(s) 568
AvrII CCTAGG 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 896
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BanII GRGCYC 2 cut(s) 842, 954
Bbv12I GWGCWC 1 cut(s) 842
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 678, 862, 1034
BccI CCATC 3 cut(s) 497, 1034, 1154
BciT130I CCWGG 2 cut(s) 342, 812
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 2 cut(s) 1120, 1121
BcoDI GTCTC 2 cut(s) 151, 845
BfaI CTAG 4 cut(s) 711, 1055, 1064, 1082
BfoI RGCGCY 1 cut(s) 249
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 7 cut(s) 202, 205, 208, 537, 692, 876, 1023
BlnI CCTAGG 1 cut(s) 710
BlsI GCNGC 7 cut(s) 203, 206, 209, 538, 693, 877, 1024
Bme1390I CCNGG 4 cut(s) 342, 812, 1120, 1121
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 2 cut(s) 295, 1119
BmgT120I GGNCC 2 cut(s) 66, 568
BmiI GGNNCC 3 cut(s) 346, 570, 991
BmrFI CCNGG 4 cut(s) 342, 812, 1120, 1121
BmsI GCATC 3 cut(s) 448, 500, 1009
BoxI GACNNNNGTC 1 cut(s) 724
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 1 cut(s) 794
Bpu10I CCTNAGC 2 cut(s) 222, 282
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 2 cut(s) 1120, 1121
BsaBI GATNNNNATC 1 cut(s) 1112
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 6 cut(s) 196, 202, 710, 946, 1119, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bse1I ACTGG 2 cut(s) 578, 745
Bse8I GATNNNNATC 1 cut(s) 1112
BseBI CCWGG 2 cut(s) 342, 812
BseDI CCNNGG 6 cut(s) 196, 202, 710, 946, 1119, 1120
BseGI GGATG 1 cut(s) 607
BseJI GATNNNNATC 1 cut(s) 1112
BseMII CTCAG 3 cut(s) 22, 236, 273
BseNI ACTGG 2 cut(s) 578, 745
BseRI GAGGAG 2 cut(s) 210, 782
BseSI GKGCMC 1 cut(s) 896
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 678, 862, 1034
Bsh1236I CGCG 3 cut(s) 118, 204, 941
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 67, 201, 207
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 842
BsiHKCI CYCGRG 2 cut(s) 295, 1119
BsiSI CCGG 1 cut(s) 1120
BslFI GGGAC 1 cut(s) 554
BsmAI GTCTC 2 cut(s) 151, 845
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 3 cut(s) 67, 201, 207
BsoBI CYCGRG 2 cut(s) 295, 1119
Bsp1286I GDGCHC 3 cut(s) 842, 896, 954
Bsp143I GATC 2 cut(s) 424, 1107
BspANI GGCC 3 cut(s) 67, 201, 207
BspCNI CTCAG 3 cut(s) 21, 235, 274
BspFNI CGCG 3 cut(s) 118, 204, 941
BspLI GGNNCC 3 cut(s) 346, 570, 991
BspPI GGATC 1 cut(s) 432
BspQI GCTCTTC 1 cut(s) 1053
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 2 cut(s) 578, 745
BssECI CCNNGG 6 cut(s) 196, 202, 710, 946, 1119, 1120
BssMI GATC 2 cut(s) 424, 1107
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 3 cut(s) 196, 710, 946
Bst2UI CCWGG 2 cut(s) 342, 812
Bst4CI ACNGT 2 cut(s) 22, 1179
Bst6I CTCTTC 5 cut(s) 96, 112, 156, 843, 1053
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 8, 222, 282
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 607
BstFNI CGCG 3 cut(s) 118, 204, 941
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 427, 1110
BstMAI GTCTC 2 cut(s) 151, 845
BstMBI GATC 2 cut(s) 424, 1107
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 2 cut(s) 342, 812
BstNSI RCATGY 1 cut(s) 1151
BstPAI GACNNNNGTC 1 cut(s) 724
BstSCI CCNGG 4 cut(s) 340, 810, 1118, 1119
BstSLI GKGCMC 1 cut(s) 896
BstUI CGCG 3 cut(s) 118, 204, 941
BstV1I GCAGC 3 cut(s) 678, 862, 1034
BstZI CGGCCG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 3 cut(s) 67, 201, 207
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 120
CciNI GCGGCCGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 66, 568
Cfr42I CCGCGG 1 cut(s) 205
Cfr9I CCCGGG 1 cut(s) 1119
CseI GACGC 2 cut(s) 124, 947
Csp6I GTAC 2 cut(s) 744, 1151
CviAII CATG 1 cut(s) 1148
CviQI GTAC 2 cut(s) 744, 1151
DdeI CTNAG 3 cut(s) 8, 222, 282
DpnI GATC 2 cut(s) 426, 1109
DpnII GATC 2 cut(s) 424, 1107
DraI TTTAAA 1 cut(s) 550
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 5 cut(s) 96, 112, 156, 843, 1053
EarI CTCTTC 5 cut(s) 96, 112, 156, 843, 1053
EciI GGCGGA 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 840
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 3 cut(s) 196, 710, 946
Eco24I GRGCYC 2 cut(s) 842, 954
Eco32I GATATC 1 cut(s) 1049
Eco47I GGWCC 1 cut(s) 568
Eco47III AGCGCT 1 cut(s) 247
Eco52I CGGCCG 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 398
Eco88I CYCGRG 2 cut(s) 295, 1119
EcoICRI GAGCTC 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 340, 810
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 3 cut(s) 196, 710, 946
EcoT38I GRGCYC 2 cut(s) 842, 954
ErhI CCWWGG 3 cut(s) 196, 710, 946
FaeI CATG 1 cut(s) 1151
FaqI GGGAC 1 cut(s) 554
FatI CATG 1 cut(s) 1147
FauI CCCGC 3 cut(s) 56, 84, 1001
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 7 cut(s) 202, 205, 208, 537, 692, 876, 1023
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 2 cut(s) 842, 954
Fsp4HI GCNGC 7 cut(s) 202, 205, 208, 537, 692, 876, 1023
FspBI CTAG 4 cut(s) 711, 1055, 1064, 1082
GlaI GCGC 1 cut(s) 247
GluI GCNGC 7 cut(s) 202, 205, 208, 537, 692, 876, 1023
GsuI CTGGAG 1 cut(s) 794
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 67, 201, 207
HapII CCGG 1 cut(s) 1120
HgaI GACGC 2 cut(s) 124, 947
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 1151
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 2 cut(s) 114, 937
HindII GTYRAC 2 cut(s) 114, 937
HinfI GANTC 4 cut(s) 192, 641, 800, 1113
HpaII CCGG 1 cut(s) 1120
HphI GGTGA 5 cut(s) 34, 124, 479, 809, 1108
Hpy166II GTNNAC 5 cut(s) 114, 153, 330, 382, 937
Hpy188III TCNNGA 6 cut(s) 260, 281, 401, 663, 736, 969
Hpy8I GTNNAC 5 cut(s) 114, 153, 330, 382, 937
Hpy99I CGWCG 3 cut(s) 115, 118, 179
HpyAV CCTTC 3 cut(s) 49, 247, 302
HpyCH4III ACNGT 2 cut(s) 22, 1179
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 461, 694, 1022, 1147
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 3 cut(s) 8, 222, 282
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 1151
HspAI GCGC 1 cut(s) 246
KspI CCGCGG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 424, 1107
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 3 cut(s) 215, 837, 995
Lsp1109I GCAGC 3 cut(s) 678, 862, 1034
LweI GCATC 3 cut(s) 448, 500, 1009
MaeI CTAG 4 cut(s) 711, 1055, 1064, 1082
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 22, 1006
MalI GATC 2 cut(s) 426, 1109
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 424, 1107
MboII GAAGA 7 cut(s) 83, 99, 173, 404, 644, 860, 1070
MfeI CAATTG 2 cut(s) 320, 762
MhlI GDGCHC 3 cut(s) 842, 896, 954
MluCI AATT 6 cut(s) 53, 320, 551, 762, 900, 956
MluI ACGCGT 1 cut(s) 939
MmeI TCCRAC 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 4 cut(s) 231, 549, 753, 782
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 1120
MspR9I CCNGG 4 cut(s) 342, 812, 1120, 1121
MunI CAATTG 2 cut(s) 320, 762
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 2 cut(s) 342, 812
MvnI CGCG 3 cut(s) 118, 204, 941
MwoI GCNNNNNNNGC 1 cut(s) 207
NciI CCSGG 2 cut(s) 1120, 1121
NdeII GATC 2 cut(s) 424, 1107
NlaIII CATG 1 cut(s) 1151
NlaIV GGNNCC 3 cut(s) 346, 570, 991
NmuCI GTSAC 1 cut(s) 22
NotI GCGGCCGC 1 cut(s) 205
NspI RCATGY 1 cut(s) 1151
PaeR7I CTCGAG 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 119
PctI GAATGC 1 cut(s) 877
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 4 cut(s) 192, 641, 800, 1113
PfoI TCCNGGA 1 cut(s) 810
PkrI GCNGC 7 cut(s) 203, 206, 209, 538, 693, 877, 1024
PpuMI RGGWCCY 1 cut(s) 568
PshAI GACNNNNGTC 1 cut(s) 724
Psp124BI GAGCTC 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 340, 810
PspGI CCWGG 2 cut(s) 340, 810
PspN4I GGNNCC 3 cut(s) 346, 570, 991
PspPI GGNCC 2 cut(s) 66, 568
PspPPI RGGWCCY 1 cut(s) 568
PspXI VCTCGAGB 1 cut(s) 295
RsaI GTAC 2 cut(s) 745, 1152
RsaNI GTAC 2 cut(s) 744, 1151
SacI GAGCTC 1 cut(s) 842
SacII CCGCGG 1 cut(s) 205
SalI GTCGAC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 1053
SaqAI TTAA 4 cut(s) 231, 549, 753, 782
SatI GCNGC 7 cut(s) 202, 205, 208, 537, 692, 876, 1023
Sau3AI GATC 2 cut(s) 424, 1107
Sau96I GGNCC 2 cut(s) 66, 568
ScrFI CCNGG 4 cut(s) 342, 812, 1120, 1121
SduI GDGCHC 3 cut(s) 842, 896, 954
SfaNI GCATC 3 cut(s) 448, 500, 1009
Sfr274I CTCGAG 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 205
SgrDI CGTCGACG 1 cut(s) 112
SinI GGWCC 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 295
SmaI CCCGGG 1 cut(s) 1121
SmlI CTYRAG 2 cut(s) 295, 866
SmoI CTYRAG 2 cut(s) 295, 866
Sse9I AATT 6 cut(s) 53, 320, 551, 762, 900, 956
SspI AATATT 1 cut(s) 442
SspMI CTAG 4 cut(s) 711, 1055, 1064, 1082
SstI GAGCTC 1 cut(s) 842
StyD4I CCNGG 4 cut(s) 340, 810, 1118, 1119
StyI CCWWGG 3 cut(s) 196, 710, 946
TaaI ACNGT 2 cut(s) 22, 1179
TaiI ACGT 1 cut(s) 29
TaqI TCGA 7 cut(s) 113, 177, 296, 437, 523, 662, 737
TasI AATT 6 cut(s) 53, 320, 551, 762, 900, 956
TauI GCSGC 4 cut(s) 204, 207, 210, 539
TfiI GAWTC 4 cut(s) 192, 641, 800, 1113
Tru1I TTAA 4 cut(s) 231, 549, 753, 782
Tru9I TTAA 4 cut(s) 231, 549, 753, 782
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 691, 875, 1022
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 930
TspMI CCCGGG 1 cut(s) 1119
TspRI CASTG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 2 cut(s) 551, 956
XceI RCATGY 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XhoI CTCGAG 1 cut(s) 295
XmaI CCCGGG 1 cut(s) 1119
XmaJI CCTAGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 4 cut(s) 711, 1055, 1064, 1082
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.