Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007819

Physical Location & Seq

Genomic Coordinates Forward (+)

963587 .. 967352

Gene Structure 3766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G013900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGGCAGCAGTGACAGCAGCAGCACCACCAAATCTAACAAGCCTGAGATTCCATGGTTGGCGCGAAAAACCCACATTCTCAATCTCACCAACAACTCTTCGCTTCTTCAGAAACTCAAGCCGTACAAAGCATCTCACTCAAGTTTTGGCTCTCGTAGATGAACAACAGCAGCAACAACAAGTCTCGTTTACAGAGGAAGAGAACTCTCTCGTTGAAGCCCTCATTGGAATTCAAGGCCGAGGCCGCTCTGCTTCTCCTCAGCAACTCACTGATGTTGAGCGTGCTGTGCAGGCTCTTGAAAGTTTACAAGGCATTCCGGACCCGACCAGCTCTAGTTTGATTGAGGGACGCTGGCAATTGATGTTTACTACAAGACCTGGAACTGCCTCTCCCATTCAAAGGACATTTGTTGGGGTCGACTTCTTTAGCGTGTTTCAAGAGGTATTTCTTCGGACAAATGACCCACGCGTATCCAATATCGTAAAATTCTCTGATGCAATAGGTGAGCTGAAAGTAGAGGCGGCGGCATCAATCAAAGATAGGAAACGAATCCTTTTCCGGTTTGACAGAGCAGCCTTTTCTTTCAAATTTTTACCATTTAAGGTTCCATATCCAGTTCCATTCAGACTTCTTGGAGATGAGGCAAAGGGTTGGTTGGATACCACATACTTGTCCCAATCTGGAAACCTCCGAATATCAAGAGGAAATAAGGGAACCACATTTGTGCTGCAAAAGAAAACTGAGCCTAGGCAAAGATTGCTATCAACCATCTCCACGGGTACAGGAGTCAAAGAGGCAATCGATGAGTTCATCTCCTTCAACCAGAATAAAGGCATAGGTGAACCAGAACTCCAAGAGGGAGAGTGGGAAATGCTATGGAGTTCACAGGAAGAGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTTATGGGCAAGCAAATTGTCAAGGAAAATGGACAAATAAAGTTTGTGGTTGACATCTTGCTTGGACTCAAATTTTCCATAACTGGCACATTTGTGAAATCTGGCACCACAACATATGATATTACAATGGACGATGCAGCCATCATCGGTGGCCAATTTGGATATCCCGTAGAGCTAGAAAGCAAGTTCAAACTAGAACTGCTGTATAGCGATGACAAGATCAGAATTACGCGGGGATATAATAAAATTGTTTTTGTGCATCTGCGAACAGATGGTACAGGACAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

407

Amino Acids

45.51

Weight (kDa)

8.55

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51110
fragaria_vesca	FvH4_3g44350 FvH4_3g44350 FvH4_3g44350 FvH4_3g44350
malus_domestica	MD11G1015800.v1.1
prunus_persica	Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1
pyrus_communis	pycom11g01100
rosa_chinensis	RchiOBHm_Chr5g0080731
rosa_laevigata	RLG00000036889
rosa_multiflora	Rmu_sc0009018.1_g000001 Rmu_sc0011427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002700
rosa_rugosa	Rorug05G0471900
rosa_samantha	Rh5AG525200 Rh5BG547300 Rh5CG570700 Rh5CG571100 Rh5DG557400
rosa_wichuraiana	Rw5G048690 Rw5G049260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1034
AccBSI	CCGCTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	3 cut(s)	66, 471, 1162
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	5 cut(s)	5, 247, 524, 527, 1162
AcoI	YGGCCR	1 cut(s)	1081
AcsI	RAATTY	4 cut(s)	231, 488, 590, 1001
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	3 cut(s)	127, 784, 1207
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	8 cut(s)	218, 236, 302, 401, 440, 589, 823, 1120
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AleI	CACNNNNGTG	2 cut(s)	725, 1022
AloI	GAACNNNNNNTCC	4 cut(s)	376, 408, 837, 869
AluBI	AGCT	3 cut(s)	333, 511, 1105
AluI	AGCT	3 cut(s)	333, 511, 1105
Alw26I	GTCTC	2 cut(s)	190, 890
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	3 cut(s)	238, 244, 1081
ApeKI	GCWGC	8 cut(s)	8, 20, 23, 172, 575, 730, 920, 1067
ApoI	RAATTY	4 cut(s)	231, 488, 590, 1001
AspA2I	CCTAGG	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	81, 518, 854
AvaII	GGWCC	1 cut(s)	322
AvrII	CCTAGG	1 cut(s)	749
BaeI	ACNNNNGTAYC	2 cut(s)	774, 807
BalI	TGGCCA	1 cut(s)	1083
BanI	GGYRCC	1 cut(s)	1034
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	8 cut(s)	20, 32, 35, 184, 587, 717, 907, 1079
BccI	CCATC	3 cut(s)	779, 1079, 1196
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	2 cut(s)	484, 655
BcoDI	GTCTC	2 cut(s)	190, 890
BfaI	CTAG	4 cut(s)	336, 750, 1106, 1124
BfuI	GTATCC	2 cut(s)	484, 655
BlnI	CCTAGG	1 cut(s)	749
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	4 cut(s)	324, 609, 718, 1036
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	5 cut(s)	142, 487, 539, 1054, 1198
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	103, 126
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	763
BsaJI	CCNNGG	4 cut(s)	55, 241, 749, 777
BsaWI	WCCGGW	2 cut(s)	319, 561
BsaXI	ACNNNNNCTCC	4 cut(s)	376, 406, 837, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse1I	ACTGG	2 cut(s)	617, 1018
Bse8I	GATNNNNATC	1 cut(s)	763
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	4 cut(s)	55, 241, 749, 777
BseJI	GATNNNNATC	1 cut(s)	763
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	38, 275, 735
BseNI	ACTGG	2 cut(s)	617, 1018
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	8 cut(s)	20, 32, 35, 184, 587, 717, 907, 1079
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	3 cut(s)	66, 471, 1162
BshFI	GGCC	3 cut(s)	240, 246, 1083
BshNI	GGYRCC	1 cut(s)	1034
BshVI	ATCGAT	1 cut(s)	804
BsiSI	CCGG	2 cut(s)	320, 562
BslFI	GGGAC	2 cut(s)	363, 661
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmAI	GTCTC	2 cut(s)	190, 890
BsmBI	CGTCTC	1 cut(s)	890
BsmFI	GGGAC	2 cut(s)	363, 661
BsmI	GAATGC	2 cut(s)	315, 922
BsnI	GGCC	3 cut(s)	240, 246, 1083
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	1149
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	5 cut(s)	5, 247, 524, 527, 1162
BspANI	GGCC	3 cut(s)	240, 246, 1083
BspCNI	CTCAG	3 cut(s)	39, 274, 736
BspDI	ATCGAT	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	3 cut(s)	66, 471, 1162
BspLI	GGNNCC	4 cut(s)	324, 609, 718, 1036
BspT107I	GGYRCC	1 cut(s)	1034
BsrBI	CCGCTC	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	617, 1018
BssECI	CCNNGG	4 cut(s)	55, 241, 749, 777
BssMI	GATC	1 cut(s)	1149
BssT1I	CCWWGG	2 cut(s)	55, 749
Bst2UI	CCWGG	1 cut(s)	381
Bst6I	CTCTTC	3 cut(s)	105, 195, 888
BstAPI	GCANNNNNTGC	1 cut(s)	760
BstC8I	GCNNGC	4 cut(s)	285, 294, 356, 941
BstDEI	CTNAG	3 cut(s)	47, 261, 744
BstDSI	CCRYGG	2 cut(s)	55, 777
BstFNI	CGCG	3 cut(s)	66, 471, 1162
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	1152
BstMAI	GTCTC	2 cut(s)	190, 890
BstMBI	GATC	1 cut(s)	1149
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 246, 289, 293, 760
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	3 cut(s)	66, 471, 1162
BstV1I	GCAGC	8 cut(s)	20, 32, 35, 184, 587, 717, 907, 1079
Bsu15I	ATCGAT	1 cut(s)	804
BsuI	GTATCC	2 cut(s)	484, 655
BsuRI	GGCC	3 cut(s)	240, 246, 1083
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	2 cut(s)	55, 777
BtgZI	GCGATG	1 cut(s)	1155
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 270
Cac8I	GCNNGC	4 cut(s)	285, 294, 356, 941
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	804
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	3 cut(s)	126, 783, 1206
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	3 cut(s)	126, 783, 1206
DdeI	CTNAG	3 cut(s)	47, 261, 744
DpnI	GATC	1 cut(s)	1151
DpnII	GATC	1 cut(s)	1149
EaeI	YGGCCR	1 cut(s)	1081
Eam1104I	CTCTTC	3 cut(s)	105, 195, 888
EarI	CTCTTC	3 cut(s)	105, 195, 888
Eco130I	CCWWGG	2 cut(s)	55, 749
Eco32I	GATATC	1 cut(s)	1094
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	1094
EcoT14I	CCWWGG	2 cut(s)	55, 749
ErhI	CCWWGG	2 cut(s)	55, 749
Esp3I	CGTCTC	1 cut(s)	890
FaeI	CATG	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	363, 661
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	1155
FauNDI	CATATG	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	420
FspBI	CTAG	4 cut(s)	336, 750, 1106, 1124
GlaI	GCGC	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	240, 246, 1083
HapII	CCGG	2 cut(s)	320, 562
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	421, 982
HindII	GTYRAC	2 cut(s)	421, 982
HinfI	GANTC	4 cut(s)	51, 552, 789, 996
HpaII	CCGG	2 cut(s)	320, 562
HphI	GGTGA	3 cut(s)	81, 518, 854
Hpy166II	GTNNAC	7 cut(s)	192, 308, 369, 421, 845, 887, 982
Hpy188I	TCNGA	6 cut(s)	113, 456, 496, 629, 695, 1154
Hpy188III	TCNNGA	5 cut(s)	299, 320, 440, 684, 702
Hpy8I	GTNNAC	7 cut(s)	192, 308, 369, 421, 845, 887, 982
HpyAV	CCTTC	1 cut(s)	829
HpyCH4V	TGCA	5 cut(s)	292, 500, 733, 1067, 1189
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 246, 289, 293, 760
HpyF3I	CTNAG	3 cut(s)	47, 261, 744
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	1149
Lsp1109I	GCAGC	8 cut(s)	20, 32, 35, 184, 587, 717, 907, 1079
LweI	GCATC	5 cut(s)	142, 487, 539, 1054, 1198
MaeI	CTAG	4 cut(s)	336, 750, 1106, 1124
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	1151
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	1 cut(s)	1149
MboII	GAAGA	5 cut(s)	92, 100, 212, 443, 905
MfeI	CAATTG	1 cut(s)	359
MlsI	TGGCCA	1 cut(s)	1083
MluCI	AATT	9 cut(s)	231, 359, 488, 590, 945, 1001, 1085, 1155, 1176
MluI	ACGCGT	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	1083
MlyI	GAGTC	2 cut(s)	798, 990
MmeI	TCCRAC	1 cut(s)	639
Mox20I	TGGCCA	1 cut(s)	1083
MroI	TCCGGA	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	1083
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	725, 1022
Msp20I	TGGCCA	1 cut(s)	1083
MspI	CCGG	2 cut(s)	320, 562
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	2 cut(s)	315, 922
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	3 cut(s)	66, 471, 1162
MwoI	GCNNNNNNNGC	5 cut(s)	17, 246, 289, 293, 760
NcoI	CCATGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	1045
NdeII	GATC	1 cut(s)	1149
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	4 cut(s)	324, 609, 718, 1036
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	13
OliI	CACNNNNGTG	2 cut(s)	725, 1022
PctI	GAATGC	2 cut(s)	315, 922
PfeI	GAWTC	2 cut(s)	51, 552
PleI	GAGTC	2 cut(s)	797, 990
PpsI	GAGTC	2 cut(s)	797, 990
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	4 cut(s)	324, 609, 718, 1036
PspPI	GGNCC	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	1189, 1221
RsaI	GTAC	3 cut(s)	127, 784, 1207
RsaNI	GTAC	3 cut(s)	126, 783, 1206
RseI	CAYNNNNRTG	2 cut(s)	725, 1022
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	603
Sau3AI	GATC	1 cut(s)	1149
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	798, 990
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	9 cut(s)	335, 382, 447, 508, 513, 609, 693, 844, 1107
SfaNI	GCATC	5 cut(s)	142, 487, 539, 1054, 1198
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	725, 1022
SmlI	CTYRAG	2 cut(s)	118, 141
SmoI	CTYRAG	2 cut(s)	118, 141
Sse9I	AATT	9 cut(s)	231, 359, 488, 590, 945, 1001, 1085, 1155, 1176
SsiI	CCGC	5 cut(s)	5, 247, 524, 527, 1162
SspMI	CTAG	4 cut(s)	336, 750, 1106, 1124
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	55, 749
TaqI	TCGA	2 cut(s)	420, 804
TasI	AATT	9 cut(s)	231, 359, 488, 590, 945, 1001, 1085, 1155, 1176
TauI	GCSGC	4 cut(s)	8, 249, 527, 530
TfiI	GAWTC	2 cut(s)	51, 552
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	18, 277
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	8 cut(s)	8, 20, 23, 172, 575, 730, 920, 1067
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	177, 802
TspGWI	ACGGA	1 cut(s)	914
TspRI	CASTG	2 cut(s)	18, 277
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	4 cut(s)	231, 488, 590, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XmaJI	CCTAGG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	4 cut(s)	336, 750, 1106, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.