Rh5DG557400

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007819
Physical Location & Seq
Reverse (-)
85910881 .. 85913546
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG557400.1

Sequence Viewer

Length: 1122 bp
ATGGCTTTCAGAGCTCACACAGTGACGTCAGCACCGACCTTCCATTCCCGCCAATTCCAAAGGCCCACATTCCCGCCCGCAACTACTCTTCGCTTCAGAAACTCTTCACCAACCCGAGCGAACTCTCTCACCGCCGAACAAGTTTCCTTCACGGAGGAAGAGAACTCCCTCGTCGAAGCCCTCATCGGAATCCAAGGCCGCGGCCGCTCCGCCTCTCCGCAACAACTCAATGAGGTTGAGAGTGCAGTAAAGGTTCTTGAAGCTCTGCAAGGAGTTCCTGAGCCGACAAGCTCGAGTTTAATTGAAGGGAGGTGGCAATTGATGTTCACTACAAGACCTGGAACTGCCTCTCCAATCCAAAGAACATTTGTGGGGGTGGACTTCTTTAGTGTATTTCAAGAGGTTTATCTTCAGACAAAGGATAAGCGTGTGTCTAATATTGTAAAGTTCTCTGATGCAATAGGTGAGCTAAAAGTAGAGGCAGAAGCATCAATCAAAGATGGAAAGCGAATACTTTTTAGATTCGACAAAGCAGCCTTTTCGTTTAAATTTTTACCATTTAAGGTTCCATATCCAGTGCCATTCAGACTTCTTGGAGATGAGGCAAAGGGTTGGTTGGATACCACATATCTGTCCCAATCTGGCAATCTTCGTATCTCAAGAGGAAATAAGGGAACAACATTTGTTCTGCAAAAGAAAGCTGAACCTAGGCAAAGACTATTGTCAGTCATCTCGACTGGTACAGGAGTTAAAGAGGCAATCGAGGAGTTTATCTCCTTAAATCAAAACATAGGTGATTTGGAACTCCAAGAGGGAGAATGGCAAATGGTTTGGAGTTCACAGATTGTCAAGGGAAATGAACAAATAAAGTTTGTGGTTGACGCTTTCCTTGGGCTCAAATTCTCCATATCTGGAACCCTCGTCAAATCTGGCTCCCGCACTTATGATGTTACAATGGATGATGCAGCCATCATTGGTGGTGGCTTTGGATATCCCCTAGAAGAGCTAGGAAGCAAGTTTGAACTAGAATTGCTATATAGCGATGACAAGATCAGAATTAGCCGGGGATATAATAAAATACTCTTTGTGCATATACGAACTGATGGTTTGAAACAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 PRT_C

Protein Analysis

373

Amino Acids

41.69

Weight (kDa)

9.17

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 54 - 230 1.4e-44 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 2 cut(s) 548, 899
AcuI CTGAAG 2 cut(s) 79, 395
AcyI GRCGYC 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 742
AgsI TTSAA 5 cut(s) 260, 305, 398, 1022, 1111
AjnI CCWGG 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 6 cut(s) 14, 263, 291, 469, 701, 1006
AluI AGCT 6 cut(s) 14, 263, 291, 469, 701, 1006
Alw21I GWGCWC 1 cut(s) 16
Ama87I CYCGRG 2 cut(s) 114, 292
AoxI GGCC 3 cut(s) 62, 196, 202
ApeKI GCWGC 2 cut(s) 533, 965
ApoI RAATTY 2 cut(s) 548, 899
Asp700I GAANNNNTTC 1 cut(s) 103
AspA2I CCTAGG 1 cut(s) 707
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 4 cut(s) 99, 121, 476, 806
AvaI CYCGRG 2 cut(s) 114, 292
AvrII CCTAGG 1 cut(s) 707
BaeI ACNNNNGTAYC 2 cut(s) 732, 765
BanII GRGCYC 2 cut(s) 16, 897
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 545, 977
BccI CCATC 3 cut(s) 494, 977, 1097
BcgI CGANNNNNNTGC 2 cut(s) 522, 556
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 613
BcnI CCSGG 1 cut(s) 1064
BfaI CTAG 4 cut(s) 708, 998, 1007, 1025
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 5 cut(s) 199, 202, 205, 534, 966
BlnI CCTAGG 1 cut(s) 707
BlsI GCNGC 5 cut(s) 200, 203, 206, 535, 967
Bme1390I CCNGG 2 cut(s) 339, 1064
BmeT110I CYCGRG 2 cut(s) 114, 292
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 567, 916, 934
BmrFI CCNGG 2 cut(s) 339, 1064
BmsI GCATC 3 cut(s) 445, 497, 952
BoxI GACNNNNGTC 1 cut(s) 721
BplI GAGNNNNNCTC 2 cut(s) 758, 790
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 1064
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 5 cut(s) 193, 199, 707, 889, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse1I ACTGG 2 cut(s) 575, 742
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 5 cut(s) 193, 199, 707, 889, 1063
BseGI GGATG 1 cut(s) 964
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 575, 742
BseRI GAGGAG 1 cut(s) 779
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 545, 977
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 64, 198, 204
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 2 cut(s) 114, 292
BsiSI CCGG 1 cut(s) 1063
BslFI GGGAC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 3 cut(s) 64, 198, 204
BsoBI CYCGRG 2 cut(s) 114, 292
Bsp1286I GDGCHC 2 cut(s) 16, 897
Bsp143I GATC 1 cut(s) 1050
BspANI GGCC 3 cut(s) 64, 198, 204
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 567, 916, 934
BspQI GCTCTTC 1 cut(s) 996
BsrBI CCGCTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 575, 742
BssECI CCNNGG 5 cut(s) 193, 199, 707, 889, 1063
BssMI GATC 1 cut(s) 1050
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 3 cut(s) 193, 707, 889
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 4 cut(s) 93, 109, 153, 996
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 964
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 1 cut(s) 1053
BstMBI GATC 1 cut(s) 1050
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 11, 204
BstNI CCWGG 1 cut(s) 339
BstPAI GACNNNNGTC 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 337, 1062
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 545, 977
BstZI CGGCCG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 3 cut(s) 64, 198, 204
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 1056
BtsCI GGATG 1 cut(s) 964
BtsIMutI CAGTG 2 cut(s) 27, 582
Cac8I GCNNGC 1 cut(s) 78
CciNI GCGGCCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 63
Cfr42I CCGCGG 1 cut(s) 202
CseI GACGC 1 cut(s) 890
Csp6I GTAC 1 cut(s) 741
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 1052
DpnII GATC 1 cut(s) 1050
DraI TTTAAA 1 cut(s) 547
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 202
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 4 cut(s) 93, 109, 153, 996
EarI CTCTTC 4 cut(s) 93, 109, 153, 996
EciI GGCGGA 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 14
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 3 cut(s) 193, 707, 889
Eco24I GRGCYC 2 cut(s) 16, 897
Eco32I GATATC 1 cut(s) 992
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 79, 395
Eco88I CYCGRG 2 cut(s) 114, 292
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 337
EcoRV GATATC 1 cut(s) 992
EcoT14I CCWWGG 3 cut(s) 193, 707, 889
EcoT38I GRGCYC 2 cut(s) 16, 897
ErhI CCWWGG 3 cut(s) 193, 707, 889
FaqI GGGAC 1 cut(s) 619
FauI CCCGC 4 cut(s) 56, 81, 85, 944
Fnu4HI GCNGC 5 cut(s) 199, 202, 205, 534, 966
FokI GGATG 1 cut(s) 971
FriOI GRGCYC 2 cut(s) 16, 897
Fsp4HI GCNGC 5 cut(s) 199, 202, 205, 534, 966
FspBI CTAG 4 cut(s) 708, 998, 1007, 1025
GluI GCNGC 5 cut(s) 199, 202, 205, 534, 966
HaeIII GGCC 3 cut(s) 64, 198, 204
HapII CCGG 1 cut(s) 1063
HgaI GACGC 1 cut(s) 890
Hin1I GRCGYC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HinfI GANTC 2 cut(s) 189, 522
HpaII CCGG 1 cut(s) 1063
HphI GGTGA 4 cut(s) 99, 121, 476, 806
Hpy166II GTNNAC 4 cut(s) 327, 379, 839, 880
Hpy188I TCNGA 7 cut(s) 11, 98, 188, 414, 454, 587, 1055
Hpy188III TCNNGA 6 cut(s) 257, 278, 398, 660, 733, 912
Hpy8I GTNNAC 4 cut(s) 327, 379, 839, 880
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 49, 157, 299
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 6 cut(s) 245, 268, 458, 691, 965, 1090
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 204
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 1 cut(s) 1050
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 2 cut(s) 212, 938
Lsp1109I GCAGC 2 cut(s) 545, 977
LweI GCATC 3 cut(s) 445, 497, 952
MaeI CTAG 4 cut(s) 708, 998, 1007, 1025
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 22, 949
MalI GATC 1 cut(s) 1052
MbiI CCGCTC 1 cut(s) 207
MboI GATC 1 cut(s) 1050
MboII GAAGA 6 cut(s) 80, 96, 170, 401, 641, 1013
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 2 cut(s) 16, 897
MluCI AATT 7 cut(s) 53, 300, 317, 548, 899, 1028, 1056
MmeI TCCRAC 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 5 cut(s) 299, 546, 561, 750, 779
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 1063
MspR9I CCNGG 2 cut(s) 339, 1064
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 11, 204
NciI CCSGG 1 cut(s) 1064
NdeII GATC 1 cut(s) 1050
NlaIV GGNNCC 3 cut(s) 567, 916, 934
NmuCI GTSAC 1 cut(s) 22
NotI GCGGCCGC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 189, 522
PkrI GCNGC 5 cut(s) 200, 203, 206, 535, 967
PshAI GACNNNNGTC 1 cut(s) 721
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 567, 916, 934
PspPI GGNCC 1 cut(s) 63
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
SacI GAGCTC 1 cut(s) 16
SacII CCGCGG 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 5 cut(s) 299, 546, 561, 750, 779
SatI GCNGC 5 cut(s) 199, 202, 205, 534, 966
Sau3AI GATC 1 cut(s) 1050
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 339, 1064
SduI GDGCHC 2 cut(s) 16, 897
SfaNI GCATC 3 cut(s) 445, 497, 952
Sfr274I CTCGAG 1 cut(s) 292
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 292
SmlI CTYRAG 2 cut(s) 292, 658
SmoI CTYRAG 2 cut(s) 292, 658
Sse9I AATT 7 cut(s) 53, 300, 317, 548, 899, 1028, 1056
SspI AATATT 1 cut(s) 439
SspMI CTAG 4 cut(s) 708, 998, 1007, 1025
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 337, 1062
StyI CCWWGG 3 cut(s) 193, 707, 889
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 29
TaqI TCGA 5 cut(s) 174, 293, 525, 734, 762
TasI AATT 7 cut(s) 53, 300, 317, 548, 899, 1028, 1056
TauI GCSGC 3 cut(s) 201, 204, 207
TfiI GAWTC 2 cut(s) 189, 522
Tru1I TTAA 5 cut(s) 299, 546, 561, 750, 779
Tru9I TTAA 5 cut(s) 299, 546, 561, 750, 779
TscAI CASTG 2 cut(s) 27, 582
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 533, 965
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 873
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 27, 582
XapI RAATTY 2 cut(s) 548, 899
XhoI CTCGAG 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 4 cut(s) 708, 998, 1007, 1025
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.