Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011427.1

Orthogroup ID

OG0007819

Physical Location & Seq

Genomic Coordinates Forward (+)

590 .. 3258

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011427.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atggctctcagagctcacacagtgacgtcagcaccgaccttccattcccgccaattccaaaggcccacattcccgcccacaactactcttcgcttcagaaactcttcaccaacccgagcgaactctctcaccgccgaacaagtttccttcacggaggaagagaactccctcgtcgaagccctcatcggaatccaaggccgcggccgctccgcctctccgcaacaactcaatgaggttgagagtgcagtgaaggttcttgaagctctgcaaggagttcctgagccgacaagctcgagtttgattgaagggaggtggcaattgatgttcactacaagacctggaactgcctctccaatccaaagaacatttgtgggggtggacttctttagtgtatttcaagaggtttatcttcagacaaaggatcagcgtgtatctaatattgtaaagttctctgatgcaataggtgagctaaaagtagaggcagaagcatcaatcaaagatggaaagcgaatactttttagattcgacaaagcagccttttcgtttaaatttttaccgtttaaggttccatatccagtgccattcagacttcttggagatgaggcaaagggttggttggataccacatatctgtcccaatcaggcaatcttcgtatctcaagaggaaataagggaacaacatttgttctgcaaaagaaagctgaacctaggcaaagactattgtcaatcatctcgactggtacaggagttaaagaggcaatcgaggagtttatctccttaaatcaaaacataggtgaattggaactccaagagggagaatggcaaatggtttggagttcacaggaagagacggatagttggcttgagaatgctgccaatggtcttatgggaacacaaattgtcaggggaaatgaacaaataaagtttgtggttgacgctttccttgggctcaaattctccatatctggaaccctcgtcaaatctggctcccgcacttatgatgttacaatggatgatgcagccatcattggcggtggctttggatatcccctagaagagctagggagcaagtttgaactagaattgctatatagcgatgacaagatcagaattagccggggatataataaaatactctttgtgcatatacgaactgatggtttgaaacagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

391

Amino Acids

43.69

Weight (kDa)

6.89

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51110
fragaria_vesca	FvH4_3g44350 FvH4_3g44350 FvH4_3g44350 FvH4_3g44350
malus_domestica	MD11G1015800.v1.1
prunus_persica	Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1 Prupe.6G013900_v2.0.a1
pyrus_communis	pycom11g01100
rosa_chinensis	RchiOBHm_Chr5g0080731
rosa_laevigata	RLG00000036889
rosa_multiflora	Rmu_sc0009018.1_g000001 Rmu_sc0011427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002700
rosa_rugosa	Rorug05G0471900
rosa_samantha	Rh5AG525200 Rh5BG547300 Rh5CG570700 Rh5CG571100 Rh5DG557400
rosa_wichuraiana	Rw5G048690 Rw5G049260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	207
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	548, 953
AcuI	CTGAAG	2 cut(s)	79, 395
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	742
AgsI	TTSAA	5 cut(s)	260, 305, 398, 1076, 1165
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	334, 366
AluBI	AGCT	6 cut(s)	14, 263, 291, 469, 701, 1060
AluI	AGCT	6 cut(s)	14, 263, 291, 469, 701, 1060
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	842
AlwI	GGATC	1 cut(s)	429
Ama87I	CYCGRG	2 cut(s)	114, 292
AoxI	GGCC	3 cut(s)	62, 196, 202
ApeKI	GCWGC	3 cut(s)	533, 872, 1019
ApoI	RAATTY	2 cut(s)	548, 953
Asp700I	GAANNNNTTC	1 cut(s)	103
AspA2I	CCTAGG	1 cut(s)	707
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	1118
AsuHPI	GGTGA	4 cut(s)	99, 121, 476, 806
AvaI	CYCGRG	2 cut(s)	114, 292
AvrII	CCTAGG	1 cut(s)	707
BaeI	ACNNNNGTAYC	2 cut(s)	732, 765
BanII	GRGCYC	2 cut(s)	16, 951
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	545, 859, 1031
BccI	CCATC	3 cut(s)	494, 1031, 1151
BcgI	CGANNNNNNTGC	2 cut(s)	522, 556
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	1118
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	4 cut(s)	708, 1052, 1061, 1079
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	6 cut(s)	199, 202, 205, 534, 873, 1020
BlnI	CCTAGG	1 cut(s)	707
BlsI	GCNGC	6 cut(s)	200, 203, 206, 535, 874, 1021
Bme1390I	CCNGG	2 cut(s)	339, 1118
BmeT110I	CYCGRG	2 cut(s)	114, 292
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	567, 970, 988
BmrFI	CCNGG	2 cut(s)	339, 1118
BmsI	GCATC	3 cut(s)	445, 497, 1006
BoxI	GACNNNNGTC	1 cut(s)	721
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	643, 884
BpuMI	CCSGG	1 cut(s)	1118
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	5 cut(s)	193, 199, 707, 943, 1117
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bse1I	ACTGG	2 cut(s)	575, 742
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	5 cut(s)	193, 199, 707, 943, 1117
BseGI	GGATG	1 cut(s)	1018
BseMII	CTCAG	2 cut(s)	22, 270
BseNI	ACTGG	2 cut(s)	575, 742
BseRI	GAGGAG	1 cut(s)	779
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	545, 859, 1031
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	64, 198, 204
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	114, 292
BsiSI	CCGG	1 cut(s)	1117
BslFI	GGGAC	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	842
BsmBI	CGTCTC	1 cut(s)	842
BsmFI	GGGAC	1 cut(s)	619
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	64, 198, 204
BsoBI	CYCGRG	2 cut(s)	114, 292
Bsp1286I	GDGCHC	2 cut(s)	16, 951
Bsp143I	GATC	2 cut(s)	421, 1104
BspANI	GGCC	3 cut(s)	64, 198, 204
BspCNI	CTCAG	2 cut(s)	21, 271
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	567, 970, 988
BspPI	GGATC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	1050
BsrBI	CCGCTC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	575, 742
BssECI	CCNNGG	5 cut(s)	193, 199, 707, 943, 1117
BssMI	GATC	2 cut(s)	421, 1104
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	3 cut(s)	193, 707, 943
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	22, 558
Bst6I	CTCTTC	5 cut(s)	93, 109, 153, 840, 1050
BstACI	GRCGYC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	8, 279
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	424, 1107
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	2 cut(s)	421, 1104
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 204
BstNI	CCWGG	1 cut(s)	339
BstPAI	GACNNNNGTC	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	337, 1116
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	545, 859, 1031
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	64, 198, 204
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	1110
BtsCI	GGATG	1 cut(s)	1018
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	27, 252, 582
CciNI	GCGGCCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	63
Cfr42I	CCGCGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	1 cut(s)	741
CviQI	GTAC	1 cut(s)	741
DdeI	CTNAG	2 cut(s)	8, 279
DpnI	GATC	2 cut(s)	423, 1106
DpnII	GATC	2 cut(s)	421, 1104
DraI	TTTAAA	1 cut(s)	547
DraIII	CACNNNGTG	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	5 cut(s)	93, 109, 153, 840, 1050
EarI	CTCTTC	5 cut(s)	93, 109, 153, 840, 1050
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	193, 707, 943
Eco24I	GRGCYC	2 cut(s)	16, 951
Eco32I	GATATC	1 cut(s)	1046
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	79, 395
Eco88I	CYCGRG	2 cut(s)	114, 292
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	1046
EcoT14I	CCWWGG	3 cut(s)	193, 707, 943
EcoT38I	GRGCYC	2 cut(s)	16, 951
ErhI	CCWWGG	3 cut(s)	193, 707, 943
Esp3I	CGTCTC	1 cut(s)	842
FaqI	GGGAC	1 cut(s)	619
FauI	CCCGC	3 cut(s)	56, 81, 998
Fnu4HI	GCNGC	6 cut(s)	199, 202, 205, 534, 873, 1020
FokI	GGATG	1 cut(s)	1025
FriOI	GRGCYC	2 cut(s)	16, 951
Fsp4HI	GCNGC	6 cut(s)	199, 202, 205, 534, 873, 1020
FspBI	CTAG	4 cut(s)	708, 1052, 1061, 1079
GluI	GCNGC	6 cut(s)	199, 202, 205, 534, 873, 1020
HaeIII	GGCC	3 cut(s)	64, 198, 204
HapII	CCGG	1 cut(s)	1117
HgaI	GACGC	1 cut(s)	944
Hin1I	GRCGYC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HinfI	GANTC	2 cut(s)	189, 522
HpaII	CCGG	1 cut(s)	1117
HphI	GGTGA	4 cut(s)	99, 121, 476, 806
Hpy166II	GTNNAC	4 cut(s)	327, 379, 839, 934
Hpy188I	TCNGA	7 cut(s)	11, 98, 188, 414, 454, 587, 1109
Hpy188III	TCNNGA	6 cut(s)	257, 278, 398, 660, 733, 966
Hpy8I	GTNNAC	4 cut(s)	327, 379, 839, 934
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	49, 157, 244, 299
HpyCH4III	ACNGT	2 cut(s)	22, 558
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	6 cut(s)	245, 268, 458, 691, 1019, 1144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 204
HpyF3I	CTNAG	2 cut(s)	8, 279
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	421, 1104
LguI	GCTCTTC	1 cut(s)	1050
LmnI	GCTCC	3 cut(s)	212, 992, 1065
Lsp1109I	GCAGC	3 cut(s)	545, 859, 1031
LweI	GCATC	3 cut(s)	445, 497, 1006
MaeI	CTAG	4 cut(s)	708, 1052, 1061, 1079
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	22, 1003
MalI	GATC	2 cut(s)	423, 1106
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	2 cut(s)	421, 1104
MboII	GAAGA	7 cut(s)	80, 96, 170, 401, 641, 857, 1067
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	16, 951
MluCI	AATT	8 cut(s)	53, 317, 548, 797, 897, 953, 1082, 1110
MmeI	TCCRAC	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	4 cut(s)	546, 561, 750, 779
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	1117
MspR9I	CCNGG	2 cut(s)	339, 1118
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	874
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	11, 204
NciI	CCSGG	1 cut(s)	1118
NdeII	GATC	2 cut(s)	421, 1104
NlaIV	GGNNCC	3 cut(s)	567, 970, 988
NmuCI	GTSAC	1 cut(s)	22
NotI	GCGGCCGC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	1050
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	874
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	189, 522
PkrI	GCNGC	6 cut(s)	200, 203, 206, 535, 874, 1021
PshAI	GACNNNNGTC	1 cut(s)	721
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	567, 970, 988
PspPI	GGNCC	1 cut(s)	63
PspXI	VCTCGAGB	1 cut(s)	292
RsaI	GTAC	1 cut(s)	742
RsaNI	GTAC	1 cut(s)	741
SacI	GAGCTC	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	1050
SaqAI	TTAA	4 cut(s)	546, 561, 750, 779
SatI	GCNGC	6 cut(s)	199, 202, 205, 534, 873, 1020
Sau3AI	GATC	2 cut(s)	421, 1104
Sau96I	GGNCC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	339, 1118
SduI	GDGCHC	2 cut(s)	16, 951
SfaNI	GCATC	3 cut(s)	445, 497, 1006
Sfr274I	CTCGAG	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	3 cut(s)	292, 658, 863
SmoI	CTYRAG	3 cut(s)	292, 658, 863
Sse9I	AATT	8 cut(s)	53, 317, 548, 797, 897, 953, 1082, 1110
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	4 cut(s)	708, 1052, 1061, 1079
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	337, 1116
StyI	CCWWGG	3 cut(s)	193, 707, 943
TaaI	ACNGT	2 cut(s)	22, 558
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	5 cut(s)	174, 293, 525, 734, 762
TasI	AATT	8 cut(s)	53, 317, 548, 797, 897, 953, 1082, 1110
TauI	GCSGC	3 cut(s)	201, 204, 207
TfiI	GAWTC	2 cut(s)	189, 522
Tru1I	TTAA	4 cut(s)	546, 561, 750, 779
Tru9I	TTAA	4 cut(s)	546, 561, 750, 779
TscAI	CASTG	3 cut(s)	27, 252, 582
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	3 cut(s)	533, 872, 1019
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	927
TspGWI	ACGGA	2 cut(s)	167, 866
TspRI	CASTG	3 cut(s)	27, 252, 582
XapI	RAATTY	2 cut(s)	548, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	4 cut(s)	708, 1052, 1061, 1079
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.