Rroxscaffold_1G00002700

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007819
Physical Location & Seq
Forward (+)
3209805 .. 3212858
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002700.1

Sequence Viewer

Length: 1176 bp
ATGGCTCTCAGAGCTCACACAGTGACGTCAGCACCGACCTTCCATTCCCGCCAATTCCAAAGGCCCACATTCCCGCCCGCAACTACTCTTCGCTTCAGAAACTCTTCATCAACCCGAGCGAACTCTCTCACCGCCGAACAAGTTTCCTTCACGGAGGAAGAGAACTCCCTCGTCGAAGCGCTCATCGGAATCCAAGGCCGCGGCCGCTCCGCCTCTCCGCAACAACTCAATGAGGTTGAGAGTGCAGTGAAGGTTCTTGAAGCTCTGCAAGGAGTTCCTGAGCCGACAAGCTCGAGTTTGATTGAAGGGAGGTGGCAATTGATGTTCACTACAAGACCTGGAACTGCCTCTCCAATCCAAAGAACATTTGTGGGGGTGGACTTCTTTAGCGTATTTCAAGAGGTTTATCTTCAGACAAAGGATCAGCGTGTGTCTAATATTGTAAAGTTCTCTGATGCAATAGGCGAGCTGAAAGTAGAGGCAGAAGCATCAATCAAAGATGGAAAGCGAATACTTTTTCGATTCGACAAAGCAGCCTTTTCGTTTAAATTTTTACCGTTTAAGGTTCCATATCCAGTGCCATTCAGACTTCTTGGAGATGAGGCAAAGGGTTGGTTGGATACCACATATCTGTCCCAATCTGGCAATCTTCGTATCTCAAGAGGAAATAAGGGAACAACATTTGTTCTGCAAAAGAAAGCTGAACCTAGGCAAAGACTATTGTCAATCATCTCGACTGGTACAGGAGTTAAAGAGGCAATCGAGGAGTTTATCTCCTTAAATCAAAACATAGGTGAATTGGAACTCCAAGAGGGAGAATGGCAAATGGTTTGGAGTTCACAGGAAGAGACGGATAGTTGGCTTGAGAATGCTGCCAATGGTCTTATGGGAACACAAATTGTCAGGGGAAATGAACAACTAAAGTTTGTGGTTGACGCTTTCCTTGGGCTCAAATTCTCCATATCTGGAACCCTCGTCAAATCTGGCTCCCGCACTTATGATGTTACAATGGATGATGCAGCCATCATTGGCGGTGGCTTTGGATATCCCCTAGAAGAGCTAGGAAGCAAGTTTGAACTAGAATTGCTATATAGCGATGACAAGATCAGAATTAGCCGGGGATATAATAAAATACTCTTTGTGCATATACGAACTGATGGTTTGAAACAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 PRT_C

Protein Analysis

391

Amino Acids

43.65

Weight (kDa)

6.89

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 54 - 230 1.4e-44 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 201
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 2 cut(s) 548, 953
AcuI CTGAAG 2 cut(s) 79, 395
AcyI GRCGYC 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 742
AfeI AGCGCT 1 cut(s) 180
AgsI TTSAA 5 cut(s) 260, 305, 398, 1076, 1165
AjnI CCWGG 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 6 cut(s) 14, 263, 291, 469, 701, 1060
AluI AGCT 6 cut(s) 14, 263, 291, 469, 701, 1060
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 2 cut(s) 114, 292
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 3 cut(s) 62, 196, 202
ApeKI GCWGC 3 cut(s) 533, 872, 1019
ApoI RAATTY 2 cut(s) 548, 953
Asp700I GAANNNNTTC 1 cut(s) 103
AspA2I CCTAGG 1 cut(s) 707
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 1118
AsuHPI GGTGA 2 cut(s) 121, 806
AvaI CYCGRG 2 cut(s) 114, 292
AvrII CCTAGG 1 cut(s) 707
BaeI ACNNNNGTAYC 2 cut(s) 732, 765
BanII GRGCYC 2 cut(s) 16, 951
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 3 cut(s) 545, 859, 1031
BccI CCATC 3 cut(s) 494, 1031, 1151
BcgI CGANNNNNNTGC 2 cut(s) 522, 556
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 613
BcnI CCSGG 1 cut(s) 1118
BcoDI GTCTC 1 cut(s) 842
BfaI CTAG 4 cut(s) 708, 1052, 1061, 1079
BfoI RGCGCY 1 cut(s) 182
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 6 cut(s) 199, 202, 205, 534, 873, 1020
BlnI CCTAGG 1 cut(s) 707
BlsI GCNGC 6 cut(s) 200, 203, 206, 535, 874, 1021
Bme1390I CCNGG 2 cut(s) 339, 1118
BmeT110I CYCGRG 2 cut(s) 114, 292
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 567, 970, 988
BmrFI CCNGG 2 cut(s) 339, 1118
BmsI GCATC 3 cut(s) 445, 497, 1006
BoxI GACNNNNGTC 1 cut(s) 721
BplI GAGNNNNNCTC 2 cut(s) 758, 790
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 643, 884
BpuMI CCSGG 1 cut(s) 1118
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 5 cut(s) 193, 199, 707, 943, 1117
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse1I ACTGG 2 cut(s) 575, 742
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 5 cut(s) 193, 199, 707, 943, 1117
BseGI GGATG 1 cut(s) 1018
BseMII CTCAG 2 cut(s) 22, 270
BseNI ACTGG 2 cut(s) 575, 742
BseRI GAGGAG 1 cut(s) 779
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 545, 859, 1031
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 64, 198, 204
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 2 cut(s) 114, 292
BsiSI CCGG 1 cut(s) 1117
BslFI GGGAC 1 cut(s) 619
BsmAI GTCTC 1 cut(s) 842
BsmBI CGTCTC 1 cut(s) 842
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 3 cut(s) 64, 198, 204
BsoBI CYCGRG 2 cut(s) 114, 292
Bsp1286I GDGCHC 2 cut(s) 16, 951
Bsp143I GATC 2 cut(s) 421, 1104
BspANI GGCC 3 cut(s) 64, 198, 204
BspCNI CTCAG 2 cut(s) 21, 271
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 567, 970, 988
BspPI GGATC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 1050
BsrBI CCGCTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 575, 742
BssECI CCNNGG 5 cut(s) 193, 199, 707, 943, 1117
BssMI GATC 2 cut(s) 421, 1104
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 3 cut(s) 193, 707, 943
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 22, 558
Bst6I CTCTTC 5 cut(s) 93, 109, 153, 840, 1050
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 78, 467
BstDEI CTNAG 2 cut(s) 8, 279
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 1018
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 424, 1107
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 2 cut(s) 421, 1104
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 11, 204
BstNI CCWGG 1 cut(s) 339
BstPAI GACNNNNGTC 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 337, 1116
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 545, 859, 1031
BstZI CGGCCG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 3 cut(s) 64, 198, 204
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 1110
BtsCI GGATG 1 cut(s) 1018
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 27, 252, 582
Cac8I GCNNGC 2 cut(s) 78, 467
CciNI GCGGCCGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 63
Cfr42I CCGCGG 1 cut(s) 202
CseI GACGC 1 cut(s) 944
Csp6I GTAC 1 cut(s) 741
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 2 cut(s) 8, 279
DpnI GATC 2 cut(s) 423, 1106
DpnII GATC 2 cut(s) 421, 1104
DraI TTTAAA 1 cut(s) 547
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 202
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 5 cut(s) 93, 109, 153, 840, 1050
EarI CTCTTC 5 cut(s) 93, 109, 153, 840, 1050
EciI GGCGGA 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 14
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 3 cut(s) 193, 707, 943
Eco24I GRGCYC 2 cut(s) 16, 951
Eco32I GATATC 1 cut(s) 1046
Eco47III AGCGCT 1 cut(s) 180
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 79, 395
Eco88I CYCGRG 2 cut(s) 114, 292
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 337
EcoRV GATATC 1 cut(s) 1046
EcoT14I CCWWGG 3 cut(s) 193, 707, 943
EcoT38I GRGCYC 2 cut(s) 16, 951
ErhI CCWWGG 3 cut(s) 193, 707, 943
Esp3I CGTCTC 1 cut(s) 842
FaqI GGGAC 1 cut(s) 619
FauI CCCGC 4 cut(s) 56, 81, 85, 998
Fnu4HI GCNGC 6 cut(s) 199, 202, 205, 534, 873, 1020
FokI GGATG 1 cut(s) 1025
FriOI GRGCYC 2 cut(s) 16, 951
Fsp4HI GCNGC 6 cut(s) 199, 202, 205, 534, 873, 1020
FspBI CTAG 4 cut(s) 708, 1052, 1061, 1079
GlaI GCGC 1 cut(s) 180
GluI GCNGC 6 cut(s) 199, 202, 205, 534, 873, 1020
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 3 cut(s) 64, 198, 204
HapII CCGG 1 cut(s) 1117
HgaI GACGC 1 cut(s) 944
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HinfI GANTC 2 cut(s) 189, 522
HpaII CCGG 1 cut(s) 1117
HphI GGTGA 2 cut(s) 121, 806
Hpy166II GTNNAC 4 cut(s) 327, 379, 839, 934
Hpy188I TCNGA 7 cut(s) 11, 98, 188, 414, 454, 587, 1109
Hpy188III TCNNGA 6 cut(s) 257, 278, 398, 660, 733, 966
Hpy8I GTNNAC 4 cut(s) 327, 379, 839, 934
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 49, 157, 244, 299
HpyCH4III ACNGT 2 cut(s) 22, 558
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 6 cut(s) 245, 268, 458, 691, 1019, 1144
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 204
HpyF3I CTNAG 2 cut(s) 8, 279
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 179
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 421, 1104
LguI GCTCTTC 1 cut(s) 1050
LmnI GCTCC 2 cut(s) 212, 992
Lsp1109I GCAGC 3 cut(s) 545, 859, 1031
LweI GCATC 3 cut(s) 445, 497, 1006
MaeI CTAG 4 cut(s) 708, 1052, 1061, 1079
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 22, 1003
MalI GATC 2 cut(s) 423, 1106
MbiI CCGCTC 1 cut(s) 207
MboI GATC 2 cut(s) 421, 1104
MboII GAAGA 7 cut(s) 80, 96, 170, 401, 641, 857, 1067
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 2 cut(s) 16, 951
MluCI AATT 8 cut(s) 53, 317, 548, 797, 897, 953, 1082, 1110
MmeI TCCRAC 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 4 cut(s) 546, 561, 750, 779
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 1117
MspR9I CCNGG 2 cut(s) 339, 1118
MunI CAATTG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 11, 204
NciI CCSGG 1 cut(s) 1118
NdeII GATC 2 cut(s) 421, 1104
NlaIV GGNNCC 3 cut(s) 567, 970, 988
NmuCI GTSAC 1 cut(s) 22
NotI GCGGCCGC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 189, 522
PkrI GCNGC 6 cut(s) 200, 203, 206, 535, 874, 1021
PshAI GACNNNNGTC 1 cut(s) 721
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 567, 970, 988
PspPI GGNCC 1 cut(s) 63
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
SacI GAGCTC 1 cut(s) 16
SacII CCGCGG 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 1050
SaqAI TTAA 4 cut(s) 546, 561, 750, 779
SatI GCNGC 6 cut(s) 199, 202, 205, 534, 873, 1020
Sau3AI GATC 2 cut(s) 421, 1104
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 339, 1118
SduI GDGCHC 2 cut(s) 16, 951
SfaNI GCATC 3 cut(s) 445, 497, 1006
Sfr274I CTCGAG 1 cut(s) 292
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 292
SmlI CTYRAG 3 cut(s) 292, 658, 863
SmoI CTYRAG 3 cut(s) 292, 658, 863
Sse9I AATT 8 cut(s) 53, 317, 548, 797, 897, 953, 1082, 1110
SspI AATATT 1 cut(s) 439
SspMI CTAG 4 cut(s) 708, 1052, 1061, 1079
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 337, 1116
StyI CCWWGG 3 cut(s) 193, 707, 943
TaaI ACNGT 2 cut(s) 22, 558
TaiI ACGT 1 cut(s) 29
TaqI TCGA 6 cut(s) 174, 293, 520, 525, 734, 762
TasI AATT 8 cut(s) 53, 317, 548, 797, 897, 953, 1082, 1110
TauI GCSGC 3 cut(s) 201, 204, 207
TfiI GAWTC 2 cut(s) 189, 522
Tru1I TTAA 4 cut(s) 546, 561, 750, 779
Tru9I TTAA 4 cut(s) 546, 561, 750, 779
TscAI CASTG 3 cut(s) 27, 252, 582
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 533, 872, 1019
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 96, 927
TspGWI ACGGA 2 cut(s) 167, 866
TspRI CASTG 3 cut(s) 27, 252, 582
XapI RAATTY 2 cut(s) 548, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XhoI CTCGAG 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 4 cut(s) 708, 1052, 1061, 1079
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.